Wall clock time and date at job start Tue Mar 31 2020 00:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.46878 * 2 1 4 4 C 1.35481 * 117.00058 * 180.02562 * 3 2 1 5 5 C 1.39634 * 119.98046 * 179.72333 * 4 3 2 6 6 N 1.31536 * 120.03967 * 179.70397 * 5 4 3 7 7 C 1.33211 * 119.98643 * 0.57124 * 6 5 4 8 8 C 1.47903 * 120.02125 * 179.72849 * 7 6 5 9 9 O 1.21548 * 120.00328 * 172.80600 * 8 7 6 10 10 N 1.34775 * 120.00159 * 352.80165 * 8 7 6 11 11 C 1.46501 * 119.99958 * 2.15956 * 10 8 7 12 12 C 1.46503 * 120.00485 * 182.15214 * 10 8 7 13 13 H 1.09007 * 109.46659 * 0.02562 * 12 10 8 14 14 C 1.52995 * 109.47320 * 240.00716 * 12 10 8 15 15 C 1.50695 * 109.47284 * 119.99971 * 12 10 8 16 16 H 1.08000 * 119.99985 * 0.02562 * 15 12 10 17 17 C 1.37873 * 120.00266 * 180.02562 * 15 12 10 18 18 N 1.31521 * 119.99877 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00134 * 180.02562 * 17 15 12 20 20 H 1.48493 * 109.47147 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47141 * 120.00117 * 19 17 15 22 22 H 1.48509 * 109.46917 * 239.99796 * 19 17 15 23 23 C 1.39379 * 119.95388 * 359.70370 * 7 6 5 24 24 N 1.32081 * 119.96403 * 0.02562 * 23 7 6 25 25 H 1.09008 * 109.46854 * 299.99931 * 1 2 3 26 26 H 1.08999 * 109.47489 * 59.99910 * 1 2 3 27 27 H 1.09000 * 109.47058 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46762 * 240.00053 * 2 1 3 29 29 H 1.09001 * 109.47165 * 119.99678 * 2 1 3 30 30 H 1.08001 * 119.97978 * 359.97438 * 5 4 3 31 31 H 1.08996 * 109.47615 * 83.78159 * 11 10 8 32 32 H 1.09002 * 109.46801 * 203.78726 * 11 10 8 33 33 H 1.09001 * 109.46886 * 323.77685 * 11 10 8 34 34 H 1.09007 * 109.46784 * 299.99347 * 14 12 10 35 35 H 1.09002 * 109.47567 * 59.99380 * 14 12 10 36 36 H 1.09001 * 109.47272 * 179.97438 * 14 12 10 37 37 H 0.96998 * 119.99953 * 179.97438 * 18 17 15 38 38 H 1.08005 * 120.02055 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3494 1.5249 -0.0005 5 6 3.8826 2.8154 -0.0064 6 7 5.1864 2.9892 -0.0011 7 6 5.9988 1.9335 -0.0015 8 6 7.4650 2.1280 -0.0016 9 8 8.2049 1.1726 0.1298 10 7 7.9807 3.3646 -0.1474 11 6 7.0891 4.5217 -0.2584 12 6 9.4330 3.5518 -0.1948 13 1 9.9272 2.5851 -0.0978 14 6 9.8673 4.4646 0.9536 15 6 9.8157 4.1814 -1.5093 16 1 9.0534 4.4188 -2.2366 17 6 11.1390 4.4544 -1.7836 18 7 12.0673 4.1658 -0.8978 19 14 11.6133 5.2356 -3.4128 20 1 10.3927 5.4599 -4.2282 21 1 12.2869 6.5349 -3.1613 22 1 12.5376 4.3323 -4.1444 23 6 5.4662 0.6454 -0.0015 24 7 4.1567 0.4731 -0.0014 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.2241 3.6714 -0.0109 31 1 6.7984 4.8534 0.7384 32 1 7.6063 5.3307 -0.7742 33 1 6.1991 4.2418 -0.8221 34 1 9.3730 5.4313 0.8562 35 1 9.5905 4.0092 1.9045 36 1 10.9478 4.6035 0.9186 37 1 12.9983 4.3575 -1.0909 38 1 6.1239 -0.2113 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189133402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:55 Heat of formation + Delta-G solvation = -28.598769 kcal Electronic energy + Delta-G solvation = -21556.910926 eV Core-core repulsion = 18207.200627 eV Total energy + Delta-G solvation = -3349.710299 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.59724 -40.68932 -39.41467 -37.26628 -35.59747 -34.58425 -33.23591 -31.85354 -30.79381 -27.70198 -27.31224 -26.33797 -25.86466 -23.71891 -23.15438 -20.81427 -19.79399 -19.09695 -18.54205 -17.89543 -17.61300 -17.31713 -16.53887 -16.40534 -15.96988 -15.64807 -15.27380 -15.02081 -14.50453 -14.28871 -13.92897 -13.81470 -13.58192 -13.48941 -13.41806 -12.98148 -12.73075 -12.68527 -12.60778 -12.38747 -12.22453 -12.10770 -11.88175 -11.78507 -11.31029 -11.13537 -10.54106 -10.15618 -9.94029 -9.32309 -8.14875 -6.31277 -0.64738 -0.14030 1.41951 1.43314 1.54955 1.66593 1.71549 2.16904 2.44237 2.63023 2.85576 2.96359 3.13284 3.31980 3.70199 3.96481 4.06320 4.18745 4.42220 4.47041 4.59843 4.66818 4.77229 4.85042 4.91417 4.95647 4.96042 5.06689 5.22541 5.30656 5.45901 5.57480 5.66310 5.87311 5.90680 6.01229 6.14915 6.43973 6.73480 6.75224 7.19541 7.41518 8.90078 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.035379 B = 0.003632 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.248535 B = 7708.433269 C = 7858.042275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.292 6.292 4 C 0.296 3.704 5 C 0.052 3.948 6 N -0.375 5.375 7 C -0.024 4.024 8 C 0.553 3.447 9 O -0.589 6.589 10 N -0.577 5.577 11 C 0.087 3.913 12 C 0.259 3.741 13 H 0.016 0.984 14 C -0.131 4.131 15 C -0.539 4.539 16 H 0.060 0.940 17 C 0.016 3.984 18 N -0.916 5.916 19 Si 0.967 3.033 20 H -0.266 1.266 21 H -0.274 1.274 22 H -0.284 1.284 23 C 0.156 3.844 24 N -0.507 5.507 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.221 0.779 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.045 0.955 35 H 0.019 0.981 36 H 0.071 0.929 37 H 0.265 0.735 38 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.136 -3.154 1.710 23.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.196 6.196 4 C 0.111 3.889 5 C -0.116 4.116 6 N -0.093 5.093 7 C -0.161 4.161 8 C 0.340 3.660 9 O -0.471 6.471 10 N -0.305 5.305 11 C -0.055 4.055 12 C 0.158 3.842 13 H 0.034 0.966 14 C -0.190 4.190 15 C -0.577 4.577 16 H 0.078 0.922 17 C -0.183 4.183 18 N -0.555 5.555 19 Si 0.792 3.208 20 H -0.190 1.190 21 H -0.199 1.199 22 H -0.210 1.210 23 C -0.002 4.002 24 N -0.237 5.237 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.117 0.883 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.238 0.762 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.123 0.877 34 H 0.065 0.935 35 H 0.038 0.962 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -22.739 -3.444 1.813 23.069 hybrid contribution 0.939 -0.065 -0.635 1.135 sum -21.800 -3.508 1.178 22.112 Atomic orbital electron populations 1.21841 0.90382 1.04422 1.03738 1.23005 0.96798 0.79555 1.02799 1.86262 1.14689 1.32658 1.85996 1.21534 0.85680 0.91888 0.89813 1.23792 0.91410 0.96143 1.00228 1.68951 1.03623 1.30932 1.05813 1.21686 0.94143 0.92113 1.08138 1.18060 0.86563 0.83500 0.77872 1.90713 1.60909 1.41402 1.54101 1.48186 1.08862 1.06687 1.66718 1.22238 0.93738 0.87423 1.02083 1.18689 0.75110 0.95417 0.95032 0.96632 1.21871 1.03197 0.98569 0.95342 1.21565 0.93159 1.41385 1.01617 0.92183 1.25727 0.96140 0.95927 1.00536 1.70025 1.01203 1.48199 1.36079 0.85379 0.78231 0.78068 0.79163 1.19022 1.19894 1.20980 1.23426 0.90173 0.97287 0.89294 1.68274 1.04663 1.33121 1.17598 0.91182 0.91224 0.88294 0.91454 0.91389 0.76245 0.92214 0.92059 0.87710 0.93544 0.96166 0.91010 0.92527 0.79718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 71.98 0.74 -0.53 16 2 C 0.05 0.77 6.04 71.98 0.43 1.21 16 3 O -0.29 -5.35 10.12 -87.81 -0.89 -6.23 16 4 C 0.30 6.58 7.50 84.92 0.64 7.22 16 5 C 0.05 1.10 11.18 85.07 0.95 2.05 16 6 N -0.38 -10.63 6.20 -183.93 -1.14 -11.77 16 7 C -0.02 -0.83 6.61 41.77 0.28 -0.55 16 8 C 0.55 24.55 7.65 86.80 0.66 25.22 16 9 O -0.59 -30.20 15.69 -3.87 -0.06 -30.26 16 10 N -0.58 -26.22 2.75 -830.15 -2.29 -28.51 16 11 C 0.09 3.16 8.25 127.77 1.05 4.21 16 12 C 0.26 13.90 2.63 44.24 0.12 14.02 16 13 H 0.02 0.99 6.90 -2.38 -0.02 0.97 16 14 C -0.13 -6.53 8.97 71.98 0.65 -5.89 16 15 C -0.54 -29.89 7.95 25.60 0.20 -29.69 16 16 H 0.06 3.27 7.44 -2.91 -0.02 3.24 16 17 C 0.02 0.91 5.30 84.65 0.45 1.36 16 18 N -0.92 -53.07 11.32 21.45 0.24 -52.83 16 19 Si 0.97 43.41 29.54 68.60 2.03 45.44 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 C 0.16 4.66 10.76 84.93 0.91 5.57 16 24 N -0.51 -13.07 9.37 -307.09 -2.88 -15.94 16 25 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 26 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.07 1.02 8.11 -2.39 -0.02 1.00 16 29 H 0.07 1.02 8.11 -2.39 -0.02 1.00 16 30 H 0.22 2.76 8.06 -2.91 -0.02 2.74 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.06 2.32 7.12 -2.39 -0.02 2.30 16 33 H 0.11 3.39 5.26 -2.60 -0.01 3.37 16 34 H 0.05 2.11 7.67 -2.38 -0.02 2.09 16 35 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 3.91 6.07 -2.39 -0.01 3.89 16 37 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 38 H 0.19 5.38 7.65 -2.91 -0.02 5.35 16 Total: -1.00 -68.89 320.84 3.17 -65.72 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 1.07 Total: 10.20 kcal Atomic # 6 Polarization: 17.10 SS G_CDS: 7.09 Total: 24.18 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -6.06 Total: -109.06 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -0.95 Total: -36.49 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -68.89 3.17 -65.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189133402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.123 kcal (2) G-P(sol) polarization free energy of solvation -68.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds