Wall clock time and date at job start Tue Mar 31 2020 01:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.37095 * 120.00195 * 2 1 4 4 H 1.08001 * 119.99917 * 172.25884 * 3 2 1 5 5 C 1.38952 * 120.00007 * 352.26203 * 3 2 1 6 6 N 1.31413 * 119.99982 * 5.48742 * 5 3 2 7 7 Si 1.86796 * 119.99994 * 185.48611 * 5 3 2 8 8 H 1.48497 * 109.47107 * 60.00253 * 7 5 3 9 9 H 1.48499 * 109.47134 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47456 * 300.00027 * 7 5 3 11 11 C 1.34774 * 120.00081 * 180.02562 * 2 1 3 12 12 O 1.21290 * 120.00227 * 185.07180 * 11 2 1 13 13 C 1.50705 * 119.99740 * 5.06492 * 11 2 1 14 14 C 1.50702 * 112.90951 * 287.11066 * 13 11 2 15 15 O 1.21286 * 119.99607 * 124.17613 * 14 13 11 16 16 N 1.34767 * 120.00120 * 304.18279 * 14 13 11 17 17 C 1.46504 * 120.00002 * 5.57910 * 16 14 13 18 18 C 1.46503 * 120.00182 * 185.58179 * 16 14 13 19 19 C 1.47199 * 109.47226 * 89.99720 * 18 16 14 20 20 N 7.05728 * 84.83859 * 148.29086 * 2 1 3 21 21 C 1.53784 * 113.61122 * 155.86339 * 13 11 2 22 22 C 1.53789 * 87.07896 * 220.02036 * 21 13 11 23 23 C 1.53783 * 87.08264 * 25.43085 * 22 21 13 24 24 H 1.09003 * 109.47721 * 184.36145 * 1 2 3 25 25 H 1.09005 * 109.47310 * 304.35842 * 1 2 3 26 26 H 1.09002 * 109.47384 * 64.35772 * 1 2 3 27 27 H 0.96993 * 120.00115 * 179.97438 * 6 5 3 28 28 H 1.08998 * 109.47163 * 89.46130 * 17 16 14 29 29 H 1.09007 * 109.46916 * 209.45504 * 17 16 14 30 30 H 1.08997 * 109.47114 * 329.45410 * 17 16 14 31 31 H 1.09000 * 109.47207 * 210.00239 * 18 16 14 32 32 H 1.09003 * 109.46524 * 329.99836 * 18 16 14 33 33 H 1.09001 * 113.61687 * 334.56440 * 21 13 11 34 34 H 1.08997 * 113.61640 * 105.47383 * 21 13 11 35 35 H 1.08998 * 113.61124 * 270.88485 * 22 21 13 36 36 H 1.09000 * 113.61771 * 139.98528 * 22 21 13 37 37 H 1.08994 * 113.61470 * 220.02216 * 23 22 21 38 38 H 1.08999 * 113.68638 * 89.12478 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.2231 1.1915 0.1260 5 6 1.4652 2.3852 -0.1620 6 7 0.1519 2.3900 -0.2071 7 14 2.4109 3.9887 -0.3158 8 1 3.3055 3.9243 -1.4993 9 1 1.4550 5.1134 -0.4791 10 1 3.2240 4.2033 0.9082 11 6 2.1388 -1.1672 -0.0005 12 8 3.3481 -1.1693 0.0923 13 6 1.3897 -2.4697 -0.1163 14 6 0.6436 -2.8312 1.1422 15 8 -0.5499 -3.0430 1.0999 16 7 1.3025 -2.9191 2.3145 17 6 2.7170 -2.5451 2.3896 18 6 0.6044 -3.3887 3.5138 19 6 0.7318 -4.8517 3.6145 20 7 0.8300 -5.9795 3.6943 21 6 2.2390 -3.6206 -0.6811 22 6 0.9935 -4.0441 -1.4777 23 6 0.5364 -2.5783 -1.3911 24 1 -0.3635 -1.0247 0.0782 25 1 -0.3634 0.5800 0.8484 26 1 -0.3634 0.4447 -0.9265 27 1 -0.3265 3.2262 -0.3198 28 1 2.8003 -1.4834 2.6216 29 1 3.2057 -3.1272 3.1710 30 1 3.1974 -2.7467 1.4322 31 1 1.0448 -2.9240 4.3960 32 1 -0.4499 -3.1194 3.4493 33 1 3.0655 -3.2864 -1.3083 34 1 2.5442 -4.3479 0.0711 35 1 0.3455 -4.7360 -0.9396 36 1 1.2154 -4.3731 -2.4929 37 1 -0.5327 -2.4642 -1.2119 38 1 0.8967 -1.9581 -2.2118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268546104.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:26 Heat of formation + Delta-G solvation = 12.492484 kcal Electronic energy + Delta-G solvation = -23182.706225 eV Core-core repulsion = 19834.777776 eV Total energy + Delta-G solvation = -3347.928449 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.06418 -38.36107 -37.07823 -36.35604 -35.35187 -34.60425 -31.64240 -29.48988 -27.35970 -26.46707 -25.62585 -25.18060 -24.10705 -21.19788 -20.00598 -18.39527 -17.76488 -17.22421 -16.83075 -16.27309 -15.50654 -15.21229 -14.90017 -14.49833 -14.15042 -13.93216 -13.83876 -13.41377 -12.89660 -12.79849 -12.53158 -12.50871 -12.19465 -12.14281 -11.77982 -11.73286 -11.56624 -11.27019 -10.99983 -10.79370 -10.72305 -10.69224 -10.45840 -10.18817 -10.02314 -9.57721 -9.07601 -8.81385 -8.39637 -7.93662 -6.31557 -3.89825 2.30799 2.67135 2.71543 3.11405 3.19462 3.22496 3.36537 3.69035 3.97745 4.02659 4.61539 4.69515 4.85908 4.92943 5.04408 5.13280 5.18923 5.32942 5.36264 5.50768 5.83518 5.91251 5.92661 6.06001 6.13734 6.24198 6.29263 6.38207 6.49396 6.53515 6.64966 7.09871 7.31187 7.39846 7.44445 7.48960 7.96189 8.22429 8.38436 9.07949 9.34971 9.86069 10.60993 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022067 B = 0.006023 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.544439 B = 4647.947664 C = 4962.117437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.429 5.429 3 C -0.305 4.305 4 H 0.106 0.894 5 C 0.030 3.970 6 N -0.880 5.880 7 Si 0.932 3.068 8 H -0.273 1.273 9 H -0.284 1.284 10 H -0.273 1.273 11 C 0.448 3.552 12 O -0.590 6.590 13 C -0.119 4.119 14 C 0.557 3.443 15 O -0.529 6.529 16 N -0.610 5.610 17 C 0.065 3.935 18 C 0.207 3.793 19 C 0.196 3.804 20 N -0.428 5.428 21 C -0.100 4.100 22 C -0.145 4.145 23 C -0.108 4.108 24 H 0.038 0.962 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.268 0.732 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.026 -6.653 3.028 7.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.145 5.145 3 C -0.432 4.432 4 H 0.123 0.877 5 C -0.173 4.173 6 N -0.520 5.520 7 Si 0.758 3.242 8 H -0.198 1.198 9 H -0.209 1.209 10 H -0.198 1.198 11 C 0.235 3.765 12 O -0.477 6.477 13 C -0.125 4.125 14 C 0.345 3.655 15 O -0.405 6.405 16 N -0.344 5.344 17 C -0.077 4.077 18 C 0.080 3.920 19 C -0.124 4.124 20 N -0.106 5.106 21 C -0.138 4.138 22 C -0.182 4.182 23 C -0.146 4.146 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.119 0.881 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.115 -8.216 3.151 8.801 hybrid contribution 0.220 1.432 0.019 1.449 sum 0.104 -6.785 3.170 7.489 Atomic orbital electron populations 1.22010 0.79878 0.97779 1.04328 1.43695 1.06262 1.04619 1.59940 1.19777 0.93811 0.82149 1.47488 0.87661 1.25368 0.95756 0.99825 0.96343 1.70196 1.06006 1.27547 1.48246 0.85911 0.78855 0.80242 0.79173 1.19806 1.20888 1.19820 1.19014 0.87447 0.83425 0.86607 1.90488 1.13551 1.86093 1.57556 1.22050 0.99008 0.97745 0.93733 1.19937 0.86850 0.74834 0.83843 1.90662 1.14454 1.49688 1.85702 1.47717 1.12995 1.65881 1.07793 1.22408 0.78722 1.01248 1.05280 1.18854 1.02141 0.80749 0.90212 1.29923 0.93124 0.95905 0.93469 1.81101 1.08676 1.13116 1.07757 1.22760 0.97128 0.94707 0.99172 1.22917 0.97549 0.97157 1.00618 1.22885 1.00523 0.96233 0.94912 0.94320 0.91367 0.91293 0.92166 0.91129 0.91907 0.87660 0.85709 0.85269 0.88103 0.91593 0.90270 0.91017 0.89518 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.34 7.97 59.84 0.48 2.82 16 2 N -0.43 -10.34 3.02 -122.19 -0.37 -10.71 16 3 C -0.30 -7.94 9.55 -14.93 -0.14 -8.08 16 4 H 0.11 2.84 7.19 -52.49 -0.38 2.46 16 5 C 0.03 0.75 5.46 -17.47 -0.10 0.66 16 6 N -0.88 -22.26 9.47 55.50 0.53 -21.74 16 7 Si 0.93 19.81 29.56 -169.99 -5.02 14.79 16 8 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 9 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 10 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 11 C 0.45 9.84 5.06 -10.98 -0.06 9.78 16 12 O -0.59 -14.04 13.66 5.55 0.08 -13.96 16 13 C -0.12 -2.14 0.06 -155.99 -0.01 -2.15 16 14 C 0.56 9.72 5.39 -10.99 -0.06 9.66 16 15 O -0.53 -9.94 14.49 5.55 0.08 -9.86 16 16 N -0.61 -8.99 2.83 -184.93 -0.52 -9.52 16 17 C 0.07 0.95 8.82 59.85 0.53 1.48 16 18 C 0.21 2.30 5.92 -6.83 -0.04 2.26 16 19 C 0.20 2.56 15.76 -20.80 -0.33 2.23 16 20 N -0.43 -6.60 18.53 42.11 0.78 -5.82 16 21 C -0.10 -1.56 5.89 -25.91 -0.15 -1.71 16 22 C -0.14 -2.08 7.80 -25.91 -0.20 -2.28 16 23 C -0.11 -1.80 5.55 -25.92 -0.14 -1.95 16 24 H 0.04 0.80 3.03 -51.93 -0.16 0.64 16 25 H 0.07 1.66 7.10 -51.93 -0.37 1.29 16 26 H 0.07 1.65 7.02 -51.93 -0.36 1.28 16 27 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 28 H 0.07 1.15 7.92 -51.93 -0.41 0.73 16 29 H 0.06 0.71 8.07 -51.93 -0.42 0.29 16 30 H 0.11 1.75 3.94 -51.93 -0.20 1.55 16 31 H 0.13 0.91 8.07 -51.93 -0.42 0.50 16 32 H 0.13 1.39 7.35 -51.93 -0.38 1.01 16 33 H 0.10 1.62 7.86 -51.93 -0.41 1.21 16 34 H 0.07 0.97 7.81 -51.93 -0.41 0.57 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.49 6.55 -51.93 -0.34 1.15 16 38 H 0.09 1.57 8.09 -51.93 -0.42 1.15 16 LS Contribution 310.69 15.07 4.68 4.68 Total: -1.00 -29.93 310.69 -4.65 -34.59 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -4.66 Total: 4.84 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: -0.22 Total: 12.71 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.41 Total: -47.78 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: 0.16 Total: -23.82 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.93 -4.65 -34.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268546104.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.081 kcal (2) G-P(sol) polarization free energy of solvation -29.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds