Wall clock time and date at job start Tue Mar 31 2020 01:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.37095 * 120.00195 * 2 1 4 4 H 1.08001 * 119.99917 * 172.25884 * 3 2 1 5 5 C 1.38952 * 120.00007 * 352.26203 * 3 2 1 6 6 N 1.31413 * 119.99982 * 5.48742 * 5 3 2 7 7 Si 1.86796 * 119.99994 * 185.48611 * 5 3 2 8 8 H 1.48497 * 109.47107 * 60.00253 * 7 5 3 9 9 H 1.48499 * 109.47134 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47456 * 300.00027 * 7 5 3 11 11 C 1.34774 * 120.00081 * 180.02562 * 2 1 3 12 12 O 1.21290 * 120.00227 * 185.07180 * 11 2 1 13 13 C 1.50705 * 119.99740 * 5.06492 * 11 2 1 14 14 C 1.50702 * 112.90951 * 287.11066 * 13 11 2 15 15 O 1.21286 * 119.99607 * 124.17613 * 14 13 11 16 16 N 1.34767 * 120.00120 * 304.18279 * 14 13 11 17 17 C 1.46504 * 120.00002 * 5.57910 * 16 14 13 18 18 C 1.46503 * 120.00182 * 185.58179 * 16 14 13 19 19 C 1.47199 * 109.47226 * 89.99720 * 18 16 14 20 20 N 7.05728 * 84.83859 * 148.29086 * 2 1 3 21 21 C 1.53784 * 113.61122 * 155.86339 * 13 11 2 22 22 C 1.53789 * 87.07896 * 220.02036 * 21 13 11 23 23 C 1.53783 * 87.08264 * 25.43085 * 22 21 13 24 24 H 1.09003 * 109.47721 * 184.36145 * 1 2 3 25 25 H 1.09005 * 109.47310 * 304.35842 * 1 2 3 26 26 H 1.09002 * 109.47384 * 64.35772 * 1 2 3 27 27 H 0.96993 * 120.00115 * 179.97438 * 6 5 3 28 28 H 1.08998 * 109.47163 * 89.46130 * 17 16 14 29 29 H 1.09007 * 109.46916 * 209.45504 * 17 16 14 30 30 H 1.08997 * 109.47114 * 329.45410 * 17 16 14 31 31 H 1.09000 * 109.47207 * 210.00239 * 18 16 14 32 32 H 1.09003 * 109.46524 * 329.99836 * 18 16 14 33 33 H 1.09001 * 113.61687 * 334.56440 * 21 13 11 34 34 H 1.08997 * 113.61640 * 105.47383 * 21 13 11 35 35 H 1.08998 * 113.61124 * 270.88485 * 22 21 13 36 36 H 1.09000 * 113.61771 * 139.98528 * 22 21 13 37 37 H 1.08994 * 113.61470 * 220.02216 * 23 22 21 38 38 H 1.08999 * 113.68638 * 89.12478 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.2231 1.1915 0.1260 5 6 1.4652 2.3852 -0.1620 6 7 0.1519 2.3900 -0.2071 7 14 2.4109 3.9887 -0.3158 8 1 3.3055 3.9243 -1.4993 9 1 1.4550 5.1134 -0.4791 10 1 3.2240 4.2033 0.9082 11 6 2.1388 -1.1672 -0.0005 12 8 3.3481 -1.1693 0.0923 13 6 1.3897 -2.4697 -0.1163 14 6 0.6436 -2.8312 1.1422 15 8 -0.5499 -3.0430 1.0999 16 7 1.3025 -2.9191 2.3145 17 6 2.7170 -2.5451 2.3896 18 6 0.6044 -3.3887 3.5138 19 6 0.7318 -4.8517 3.6145 20 7 0.8300 -5.9795 3.6943 21 6 2.2390 -3.6206 -0.6811 22 6 0.9935 -4.0441 -1.4777 23 6 0.5364 -2.5783 -1.3911 24 1 -0.3635 -1.0247 0.0782 25 1 -0.3634 0.5800 0.8484 26 1 -0.3634 0.4447 -0.9265 27 1 -0.3265 3.2262 -0.3198 28 1 2.8003 -1.4834 2.6216 29 1 3.2057 -3.1272 3.1710 30 1 3.1974 -2.7467 1.4322 31 1 1.0448 -2.9240 4.3960 32 1 -0.4499 -3.1194 3.4493 33 1 3.0655 -3.2864 -1.3083 34 1 2.5442 -4.3479 0.0711 35 1 0.3455 -4.7360 -0.9396 36 1 1.2154 -4.3731 -2.4929 37 1 -0.5327 -2.4642 -1.2119 38 1 0.8967 -1.9581 -2.2118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268546104.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:25 Heat of formation + Delta-G solvation = -6.019013 kcal Electronic energy + Delta-G solvation = -23183.508944 eV Core-core repulsion = 19834.777776 eV Total energy + Delta-G solvation = -3348.731168 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.48659 -39.89295 -38.44206 -37.65214 -36.83704 -36.20122 -33.54048 -30.61078 -28.92129 -28.00504 -27.03183 -26.55229 -25.85901 -22.49066 -21.61647 -19.67045 -19.02945 -18.87652 -18.52120 -17.51414 -16.96354 -16.76925 -16.33037 -15.96330 -15.79650 -15.42604 -15.05247 -14.90530 -14.28908 -14.14139 -13.87594 -13.67629 -13.64907 -13.59332 -13.39712 -13.03946 -12.89258 -12.74257 -12.60010 -12.50841 -12.20475 -12.12950 -12.05461 -11.92919 -11.37058 -11.00503 -10.89481 -10.16437 -10.05195 -9.83900 -8.21003 -5.87518 1.18292 1.29488 1.43409 1.45203 1.55092 1.70091 1.95995 2.26571 2.28516 2.96225 2.99509 3.11894 3.43747 3.53787 3.59331 3.81224 3.94382 4.22706 4.26992 4.42271 4.48009 4.66779 4.68747 4.70576 4.81127 4.95452 5.01942 5.06536 5.08115 5.20115 5.31982 5.38587 5.48228 5.52100 6.02800 6.05735 6.42776 6.47604 6.88756 7.17499 7.50140 8.01772 8.70191 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022067 B = 0.006023 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.544439 B = 4647.947664 C = 4962.117437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.449 5.449 3 C -0.336 4.336 4 H 0.087 0.913 5 C -0.004 4.004 6 N -0.897 5.897 7 Si 0.991 3.009 8 H -0.274 1.274 9 H -0.275 1.275 10 H -0.269 1.269 11 C 0.457 3.543 12 O -0.609 6.609 13 C -0.127 4.127 14 C 0.553 3.447 15 O -0.545 6.545 16 N -0.607 5.607 17 C 0.069 3.931 18 C 0.205 3.795 19 C 0.218 3.782 20 N -0.470 5.470 21 C -0.094 4.094 22 C -0.125 4.125 23 C -0.112 4.112 24 H 0.057 0.943 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.270 0.730 28 H 0.050 0.950 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.171 0.829 32 H 0.138 0.862 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.093 -7.213 3.577 8.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.166 5.166 3 C -0.463 4.463 4 H 0.105 0.895 5 C -0.205 4.205 6 N -0.537 5.537 7 Si 0.815 3.185 8 H -0.199 1.199 9 H -0.200 1.200 10 H -0.194 1.194 11 C 0.245 3.755 12 O -0.497 6.497 13 C -0.133 4.133 14 C 0.341 3.659 15 O -0.422 6.422 16 N -0.340 5.340 17 C -0.072 4.072 18 C 0.081 3.919 19 C -0.101 4.101 20 N -0.148 5.148 21 C -0.132 4.132 22 C -0.163 4.163 23 C -0.150 4.150 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.120 0.880 30 H 0.103 0.897 31 H 0.188 0.812 32 H 0.155 0.845 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.116 0.884 37 H 0.100 0.900 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.008 -8.796 3.719 9.550 hybrid contribution 0.225 1.563 -0.127 1.584 sum 0.233 -7.233 3.592 8.080 Atomic orbital electron populations 1.21706 0.79351 0.98217 1.02405 1.43847 1.06607 1.04864 1.61271 1.19771 0.93368 0.83660 1.49542 0.89469 1.26074 0.96609 1.02260 0.95591 1.70293 1.06835 1.28295 1.48297 0.85015 0.77739 0.76743 0.78980 1.19909 1.19976 1.19399 1.19638 0.87393 0.84204 0.84231 1.90469 1.14775 1.86823 1.57634 1.22159 0.99844 0.96155 0.95152 1.19813 0.86636 0.75075 0.84387 1.90656 1.14838 1.50727 1.86021 1.47744 1.13167 1.64912 1.08149 1.22317 0.78729 1.00712 1.05484 1.19309 1.02753 0.79681 0.90207 1.30127 0.91813 0.95954 0.92189 1.81134 1.10157 1.14402 1.09148 1.22753 0.97279 0.93804 0.99377 1.22822 0.96180 0.95322 1.01938 1.22893 0.99932 0.98185 0.93997 0.92486 0.93394 0.93027 0.91951 0.93123 0.88036 0.89729 0.81157 0.84487 0.88687 0.90485 0.89955 0.88418 0.90028 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.83 7.97 127.77 1.02 6.85 16 2 N -0.45 -22.00 3.02 -658.90 -1.99 -24.00 16 3 C -0.34 -17.89 9.55 84.04 0.80 -17.08 16 4 H 0.09 4.85 7.19 -2.91 -0.02 4.83 16 5 C 0.00 -0.22 5.46 84.93 0.46 0.25 16 6 N -0.90 -45.86 9.47 21.66 0.21 -45.66 16 7 Si 0.99 40.67 29.56 68.60 2.03 42.70 16 8 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 9 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 10 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 11 C 0.46 20.19 5.06 87.66 0.44 20.63 16 12 O -0.61 -29.33 13.66 -3.06 -0.04 -29.38 16 13 C -0.13 -4.47 0.06 -53.14 0.00 -4.47 16 14 C 0.55 18.53 5.39 87.66 0.47 19.01 16 15 O -0.54 -19.66 14.49 -3.05 -0.04 -19.70 16 16 N -0.61 -16.64 2.83 -857.38 -2.43 -19.07 16 17 C 0.07 1.90 8.82 127.77 1.13 3.03 16 18 C 0.21 3.94 5.92 84.57 0.50 4.44 16 19 C 0.22 5.16 15.76 89.45 1.41 6.57 16 20 N -0.47 -13.64 18.53 19.99 0.37 -13.27 16 21 C -0.09 -2.81 5.89 31.12 0.18 -2.62 16 22 C -0.13 -3.32 7.80 31.12 0.24 -3.08 16 23 C -0.11 -3.66 5.55 31.12 0.17 -3.49 16 24 H 0.06 2.38 3.03 -2.39 -0.01 2.37 16 25 H 0.05 2.37 7.10 -2.38 -0.02 2.35 16 26 H 0.05 2.52 7.02 -2.39 -0.02 2.50 16 27 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 28 H 0.05 1.60 7.92 -2.39 -0.02 1.58 16 29 H 0.10 1.97 8.07 -2.38 -0.02 1.95 16 30 H 0.08 2.72 3.94 -2.39 -0.01 2.71 16 31 H 0.17 1.76 8.07 -2.39 -0.02 1.74 16 32 H 0.14 2.56 7.35 -2.39 -0.02 2.54 16 33 H 0.09 2.95 7.86 -2.39 -0.02 2.94 16 34 H 0.08 2.12 7.81 -2.39 -0.02 2.10 16 35 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.08 2.74 6.55 -2.39 -0.02 2.73 16 38 H 0.08 2.86 8.09 -2.39 -0.02 2.84 16 Total: -1.00 -65.30 310.69 6.02 -59.28 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 1.09 Total: 19.08 kcal Atomic # 6 Polarization: 23.19 SS G_CDS: 6.83 Total: 30.02 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -3.85 Total: -102.00 kcal Atomic # 8 Polarization: -48.99 SS G_CDS: -0.09 Total: -49.08 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -65.30 6.02 -59.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268546104.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.260 kcal (2) G-P(sol) polarization free energy of solvation -65.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds