Wall clock time and date at job start Tue Mar 31 2020 02:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35911 * 116.99858 * 2 1 4 4 C 1.39136 * 120.47231 * 179.97438 * 3 2 1 5 5 C 1.38545 * 118.37332 * 179.69707 * 4 3 2 6 6 C 1.38251 * 119.21857 * 0.27640 * 5 4 3 7 7 C 1.50702 * 119.55436 * 180.02562 * 6 5 4 8 8 N 1.46507 * 109.46834 * 94.99950 * 7 6 5 9 9 C 1.34776 * 119.99714 * 180.02562 * 8 7 6 10 10 O 1.21588 * 119.99916 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99790 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99944 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47168 * 180.02562 * 12 11 9 14 14 C 1.50704 * 109.46844 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00495 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99274 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99502 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00464 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47083 * 89.99630 * 18 16 14 20 20 H 1.48501 * 109.47245 * 209.99757 * 18 16 14 21 21 H 1.48498 * 109.47091 * 329.99576 * 18 16 14 22 22 N 1.31842 * 120.88969 * 359.97438 * 6 5 4 23 23 C 1.31846 * 121.78127 * 359.97438 * 22 6 5 24 24 H 1.09002 * 109.47052 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47071 * 300.00270 * 1 2 3 26 26 H 1.09000 * 109.47025 * 60.00190 * 1 2 3 27 27 H 1.08002 * 120.81609 * 359.97438 * 4 3 2 28 28 H 1.07998 * 120.38410 * 180.25316 * 5 4 3 29 29 H 1.08996 * 109.47327 * 214.99939 * 7 6 5 30 30 H 1.09001 * 109.47063 * 335.00742 * 7 6 5 31 31 H 0.96990 * 120.00257 * 0.02562 * 8 7 6 32 32 H 0.96990 * 120.00182 * 0.02562 * 11 9 8 33 33 H 1.09002 * 109.47306 * 300.00235 * 12 11 9 34 34 H 1.09003 * 109.46967 * 60.00166 * 12 11 9 35 35 H 1.08998 * 109.46738 * 299.99680 * 13 12 11 36 36 H 1.08990 * 109.47270 * 59.99972 * 13 12 11 37 37 H 0.97000 * 120.00107 * 180.02562 * 17 16 14 38 38 H 1.07995 * 119.65565 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4348 1.2953 0.0005 5 6 4.0181 2.5519 -0.0059 6 6 3.2079 3.6721 -0.0068 7 6 3.8343 5.0427 -0.0144 8 7 3.9223 5.5317 -1.3927 9 6 4.4531 6.7447 -1.6447 10 8 4.8594 7.4328 -0.7283 11 7 4.5336 7.1948 -2.9125 12 6 5.1100 8.5134 -3.1865 13 6 5.0819 8.7794 -4.6929 14 6 5.6755 10.1357 -4.9747 15 1 6.0370 10.7466 -4.1609 16 6 5.7579 10.5960 -6.2717 17 7 6.2754 11.7798 -6.5176 18 14 5.1331 9.5391 -7.6795 19 1 3.7002 9.8404 -7.9266 20 1 5.9191 9.8319 -8.9050 21 1 5.2836 8.1046 -7.3261 22 7 1.8944 3.5574 -0.0021 23 6 1.3002 2.3805 0.0031 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 4.0433 0.4030 0.0014 28 1 5.0932 2.6552 -0.0098 29 1 3.2222 5.7253 0.5749 30 1 4.8343 4.9875 0.4159 31 1 3.5986 4.9827 -2.1237 32 1 4.2092 6.6460 -3.6435 33 1 4.5284 9.2783 -2.6719 34 1 6.1403 8.5404 -2.8316 35 1 5.6634 8.0146 -5.2078 36 1 4.0516 8.7526 -5.0474 37 1 6.3331 12.1039 -7.4301 38 1 0.2216 2.3265 0.0064 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279063270.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:13 Heat of formation + Delta-G solvation = -34.730339 kcal Electronic energy + Delta-G solvation = -20253.698019 eV Core-core repulsion = 16903.721835 eV Total energy + Delta-G solvation = -3349.976184 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.15854 -39.61139 -38.65681 -35.28648 -34.45429 -32.89033 -32.76757 -31.31983 -29.86839 -28.16335 -26.54475 -24.52743 -23.72544 -22.29577 -20.78221 -20.62260 -18.69382 -18.23688 -17.53625 -16.86625 -16.47594 -16.32516 -15.63985 -15.36905 -14.75331 -14.66323 -14.32509 -14.10750 -13.81707 -13.63373 -13.53449 -13.36455 -12.59871 -12.55215 -12.48972 -12.25529 -11.97322 -11.44330 -11.17086 -10.35336 -10.24299 -10.17279 -9.95638 -9.87676 -9.76000 -9.29495 -9.05875 -8.87421 -8.59756 -8.33948 -6.08071 -4.07771 0.60264 0.79619 2.63350 2.91756 3.27503 3.34922 3.36361 3.47235 3.56278 3.88946 4.15144 4.27066 4.40392 4.45697 4.60697 4.63045 4.66462 4.88202 4.97825 5.10546 5.24912 5.31325 5.43703 5.63969 5.73910 6.02165 6.12283 6.29480 6.51639 6.63516 6.66446 6.86252 7.07737 7.28766 7.33380 7.53490 7.70855 8.33039 8.49262 8.93911 8.97544 9.52165 11.05008 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.028786 B = 0.002628 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.477935 B =10652.807784 C =11258.445096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.312 6.312 3 C 0.080 3.920 4 C -0.110 4.110 5 C -0.110 4.110 6 C 0.073 3.927 7 C 0.198 3.802 8 N -0.747 5.747 9 C 0.702 3.298 10 O -0.594 6.594 11 N -0.742 5.742 12 C 0.148 3.852 13 C -0.022 4.022 14 C -0.521 4.521 15 H 0.076 0.924 16 C 0.068 3.932 17 N -0.899 5.899 18 Si 0.883 3.117 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.266 1.266 22 N -0.431 5.431 23 C 0.019 3.981 24 H 0.104 0.896 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.145 0.855 28 H 0.147 0.853 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.394 0.606 32 H 0.391 0.609 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.021 0.979 36 H 0.017 0.983 37 H 0.264 0.736 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.911 -26.956 12.547 31.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.224 6.224 3 C 0.032 3.968 4 C -0.136 4.136 5 C -0.130 4.130 6 C -0.065 4.065 7 C 0.073 3.927 8 N -0.404 5.404 9 C 0.401 3.599 10 O -0.472 6.472 11 N -0.395 5.395 12 C 0.026 3.974 13 C -0.060 4.060 14 C -0.559 4.559 15 H 0.094 0.906 16 C -0.134 4.134 17 N -0.537 5.537 18 Si 0.710 3.290 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.191 1.191 22 N -0.141 5.141 23 C -0.140 4.140 24 H 0.122 0.878 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.163 0.837 28 H 0.165 0.835 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.227 0.773 32 H 0.224 0.776 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.040 0.960 36 H 0.035 0.965 37 H 0.074 0.926 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.897 -25.590 13.262 30.814 hybrid contribution -0.455 -1.702 -1.553 2.348 sum -11.352 -27.292 11.709 31.794 Atomic orbital electron populations 1.23161 0.77707 1.04550 1.01803 1.86089 1.21901 1.26011 1.88357 1.20148 0.93344 0.85832 0.97467 1.20970 0.91670 0.98982 1.02001 1.21952 1.01855 0.91440 0.97772 1.21181 0.89126 0.95673 1.00547 1.19786 1.00175 0.89032 0.83750 1.45035 1.68241 1.18796 1.08372 1.15971 0.78917 0.81008 0.83980 1.90910 1.54928 1.57428 1.43943 1.45508 1.66640 1.21686 1.05703 1.21380 0.97548 0.80202 0.98306 1.19799 0.97037 0.98386 0.90759 1.20926 1.40585 1.00116 0.94310 0.90554 1.25005 0.94694 0.94895 0.98768 1.69907 1.45160 1.18118 1.20551 0.86741 0.79046 0.81333 0.81873 1.20267 1.21331 1.19112 1.67383 1.11640 1.26554 1.08524 1.22938 1.00634 0.86941 1.03448 0.87759 0.92228 0.92182 0.83712 0.83513 0.89953 0.89987 0.77302 0.77599 0.92128 0.92092 0.96048 0.96469 0.92591 0.82317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.82 101.05 0.99 1.08 16 2 O -0.31 -2.29 10.51 -19.46 -0.20 -2.49 16 3 C 0.08 0.65 6.71 -39.08 -0.26 0.39 16 4 C -0.11 -0.83 10.13 -39.13 -0.40 -1.23 16 5 C -0.11 -0.87 9.71 -39.46 -0.38 -1.26 16 6 C 0.07 0.73 6.15 -82.58 -0.51 0.23 16 7 C 0.20 2.28 5.98 -5.19 -0.03 2.25 16 8 N -0.75 -9.60 5.55 -66.41 -0.37 -9.97 16 9 C 0.70 12.12 8.57 -86.92 -0.74 11.38 16 10 O -0.59 -12.67 16.34 5.29 0.09 -12.58 16 11 N -0.74 -12.72 5.56 -65.22 -0.36 -13.08 16 12 C 0.15 3.12 5.61 -4.04 -0.02 3.09 16 13 C -0.02 -0.51 4.16 -27.88 -0.12 -0.63 16 14 C -0.52 -14.74 9.66 -34.44 -0.33 -15.08 16 15 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 17 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 18 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 22 N -0.43 -4.67 10.27 -9.35 -0.10 -4.76 16 23 C 0.02 0.17 10.22 -17.37 -0.18 -0.01 16 24 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.06 0.17 7.67 -51.93 -0.40 -0.23 16 26 H 0.06 0.19 7.69 -51.93 -0.40 -0.21 16 27 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 28 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 31 H 0.39 4.22 8.48 -40.82 -0.35 3.87 16 32 H 0.39 5.59 8.49 -40.82 -0.35 5.25 16 33 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 36 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.16 0.99 6.32 -52.49 -0.33 0.66 16 LS Contribution 329.03 15.07 4.96 4.96 Total: -1.00 -35.11 329.03 -7.09 -42.21 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.13 Total: 3.86 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -2.08 Total: 2.09 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.05 Total: -54.59 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.12 Total: -15.08 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.11 -7.09 -42.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279063270.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.475 kcal (2) G-P(sol) polarization free energy of solvation -35.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds