Wall clock time and date at job start Tue Mar 31 2020 02:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35911 * 116.99858 * 2 1 4 4 C 1.39136 * 120.47231 * 179.97438 * 3 2 1 5 5 C 1.38545 * 118.37332 * 179.69707 * 4 3 2 6 6 C 1.38251 * 119.21857 * 0.27640 * 5 4 3 7 7 C 1.50702 * 119.55436 * 180.02562 * 6 5 4 8 8 N 1.46507 * 109.46834 * 94.99950 * 7 6 5 9 9 C 1.34776 * 119.99714 * 180.02562 * 8 7 6 10 10 O 1.21588 * 119.99916 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99790 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99944 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47168 * 180.02562 * 12 11 9 14 14 C 1.50704 * 109.46844 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00495 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99274 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99502 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00464 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47083 * 89.99630 * 18 16 14 20 20 H 1.48501 * 109.47245 * 209.99757 * 18 16 14 21 21 H 1.48498 * 109.47091 * 329.99576 * 18 16 14 22 22 N 1.31842 * 120.88969 * 359.97438 * 6 5 4 23 23 C 1.31846 * 121.78127 * 359.97438 * 22 6 5 24 24 H 1.09002 * 109.47052 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47071 * 300.00270 * 1 2 3 26 26 H 1.09000 * 109.47025 * 60.00190 * 1 2 3 27 27 H 1.08002 * 120.81609 * 359.97438 * 4 3 2 28 28 H 1.07998 * 120.38410 * 180.25316 * 5 4 3 29 29 H 1.08996 * 109.47327 * 214.99939 * 7 6 5 30 30 H 1.09001 * 109.47063 * 335.00742 * 7 6 5 31 31 H 0.96990 * 120.00257 * 0.02562 * 8 7 6 32 32 H 0.96990 * 120.00182 * 0.02562 * 11 9 8 33 33 H 1.09002 * 109.47306 * 300.00235 * 12 11 9 34 34 H 1.09003 * 109.46967 * 60.00166 * 12 11 9 35 35 H 1.08998 * 109.46738 * 299.99680 * 13 12 11 36 36 H 1.08990 * 109.47270 * 59.99972 * 13 12 11 37 37 H 0.97000 * 120.00107 * 180.02562 * 17 16 14 38 38 H 1.07995 * 119.65565 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4348 1.2953 0.0005 5 6 4.0181 2.5519 -0.0059 6 6 3.2079 3.6721 -0.0068 7 6 3.8343 5.0427 -0.0144 8 7 3.9223 5.5317 -1.3927 9 6 4.4531 6.7447 -1.6447 10 8 4.8594 7.4328 -0.7283 11 7 4.5336 7.1948 -2.9125 12 6 5.1100 8.5134 -3.1865 13 6 5.0819 8.7794 -4.6929 14 6 5.6755 10.1357 -4.9747 15 1 6.0370 10.7466 -4.1609 16 6 5.7579 10.5960 -6.2717 17 7 6.2754 11.7798 -6.5176 18 14 5.1331 9.5391 -7.6795 19 1 3.7002 9.8404 -7.9266 20 1 5.9191 9.8319 -8.9050 21 1 5.2836 8.1046 -7.3261 22 7 1.8944 3.5574 -0.0021 23 6 1.3002 2.3805 0.0031 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 4.0433 0.4030 0.0014 28 1 5.0932 2.6552 -0.0098 29 1 3.2222 5.7253 0.5749 30 1 4.8343 4.9875 0.4159 31 1 3.5986 4.9827 -2.1237 32 1 4.2092 6.6460 -3.6435 33 1 4.5284 9.2783 -2.6719 34 1 6.1403 8.5404 -2.8316 35 1 5.6634 8.0146 -5.2078 36 1 4.0516 8.7526 -5.0474 37 1 6.3331 12.1039 -7.4301 38 1 0.2216 2.3265 0.0064 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279063270.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:13 Heat of formation + Delta-G solvation = -62.495879 kcal Electronic energy + Delta-G solvation = -20254.902023 eV Core-core repulsion = 16903.721835 eV Total energy + Delta-G solvation = -3351.180188 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.79393 -40.91434 -39.28124 -36.78916 -35.76858 -34.76866 -33.49726 -32.48343 -31.37630 -28.60608 -27.59856 -26.19261 -24.32590 -23.08813 -22.58602 -22.00637 -19.62671 -19.16264 -18.89080 -18.14325 -17.53424 -16.83512 -16.72165 -16.62856 -16.22219 -15.52607 -15.45415 -15.33983 -15.07116 -14.94845 -14.57664 -14.35190 -14.05288 -13.70244 -13.32739 -13.05444 -12.99979 -12.75721 -12.42057 -12.15625 -12.14061 -11.74575 -11.53129 -11.32455 -10.77122 -10.76718 -10.51550 -10.37040 -9.74244 -9.49679 -8.28120 -6.35099 -0.03721 0.18254 1.40400 1.43004 1.54317 1.76014 2.17122 2.19488 2.38488 2.70357 3.06831 3.18686 3.44176 3.58658 3.65066 3.92881 4.25107 4.35410 4.37852 4.38018 4.47919 4.54270 4.57095 4.68849 4.76686 4.78645 4.89115 5.06916 5.17423 5.39689 5.43984 5.44389 5.46896 5.68595 6.00795 6.16902 6.25392 6.72215 6.87840 7.11888 7.29089 7.59526 8.88664 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.028786 B = 0.002628 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.477935 B =10652.807784 C =11258.445096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.322 6.322 3 C 0.081 3.919 4 C -0.113 4.113 5 C -0.102 4.102 6 C 0.059 3.941 7 C 0.199 3.801 8 N -0.726 5.726 9 C 0.701 3.299 10 O -0.638 6.638 11 N -0.732 5.732 12 C 0.164 3.836 13 C -0.012 4.012 14 C -0.538 4.538 15 H 0.029 0.971 16 C 0.003 3.997 17 N -0.951 5.951 18 Si 0.960 3.040 19 H -0.266 1.266 20 H -0.287 1.287 21 H -0.237 1.237 22 N -0.459 5.459 23 C 0.011 3.989 24 H 0.123 0.877 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.166 0.834 28 H 0.167 0.833 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.408 0.592 32 H 0.409 0.591 33 H 0.040 0.960 34 H 0.044 0.956 35 H 0.038 0.962 36 H 0.034 0.966 37 H 0.268 0.732 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.202 -30.552 11.593 34.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.234 6.234 3 C 0.033 3.967 4 C -0.140 4.140 5 C -0.122 4.122 6 C -0.079 4.079 7 C 0.075 3.925 8 N -0.383 5.383 9 C 0.400 3.600 10 O -0.520 6.520 11 N -0.387 5.387 12 C 0.040 3.960 13 C -0.050 4.050 14 C -0.576 4.576 15 H 0.048 0.952 16 C -0.194 4.194 17 N -0.591 5.591 18 Si 0.783 3.217 19 H -0.191 1.191 20 H -0.213 1.213 21 H -0.160 1.160 22 N -0.169 5.169 23 C -0.148 4.148 24 H 0.141 0.859 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.183 0.817 28 H 0.185 0.815 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.243 0.757 32 H 0.245 0.755 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -12.225 -29.260 12.313 34.018 hybrid contribution -0.093 -0.617 -1.142 1.301 sum -12.317 -29.877 11.171 34.193 Atomic orbital electron populations 1.23448 0.75940 1.06144 1.02596 1.86086 1.23788 1.25542 1.88033 1.20281 0.93761 0.86051 0.96604 1.21267 0.91833 0.99548 1.01314 1.22102 1.02668 0.90851 0.96607 1.20939 0.89303 0.95176 1.02521 1.19800 1.00467 0.89767 0.82469 1.44859 1.66577 1.17199 1.09643 1.16078 0.78794 0.81821 0.83258 1.90886 1.56844 1.59013 1.45210 1.45117 1.66536 1.20506 1.06521 1.20891 0.96555 0.81735 0.96842 1.19646 0.97555 0.95690 0.92070 1.21255 1.40794 1.02139 0.93438 0.95216 1.26090 0.94769 0.96374 1.02200 1.70079 1.46932 1.20545 1.21522 0.85520 0.78541 0.80530 0.77149 1.19126 1.21270 1.15955 1.67304 1.12226 1.27880 1.09515 1.23212 1.01594 0.86562 1.03397 0.85871 0.91376 0.91439 0.81693 0.81536 0.91837 0.89251 0.75658 0.75484 0.94120 0.93790 0.94397 0.94745 0.92358 0.80561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.82 113.37 1.11 1.18 16 2 O -0.32 -3.99 10.51 -92.55 -0.97 -4.96 16 3 C 0.08 1.16 6.71 22.60 0.15 1.31 16 4 C -0.11 -1.44 10.13 22.56 0.23 -1.21 16 5 C -0.10 -1.39 9.71 22.35 0.22 -1.18 16 6 C 0.06 1.09 6.15 42.56 0.26 1.36 16 7 C 0.20 4.45 5.98 85.63 0.51 4.96 16 8 N -0.73 -17.63 5.55 -482.28 -2.68 -20.31 16 9 C 0.70 23.68 8.57 179.05 1.53 25.21 16 10 O -0.64 -27.51 16.34 -3.99 -0.07 -27.57 16 11 N -0.73 -24.02 5.56 -478.52 -2.66 -26.68 16 12 C 0.16 6.90 5.61 86.38 0.48 7.39 16 13 C -0.01 -0.53 4.16 29.85 0.12 -0.41 16 14 C -0.54 -31.02 9.66 25.60 0.25 -30.78 16 15 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 16 C 0.00 0.15 5.47 84.65 0.46 0.62 16 17 N -0.95 -59.70 13.96 21.45 0.30 -59.40 16 18 Si 0.96 42.63 27.47 68.60 1.88 44.51 16 19 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 20 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 21 H -0.24 -9.31 6.54 99.48 0.65 -8.66 16 22 N -0.46 -9.39 10.27 -183.49 -1.88 -11.28 16 23 C 0.01 0.18 10.22 84.80 0.87 1.04 16 24 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 25 H 0.07 0.24 7.67 -2.39 -0.02 0.23 16 26 H 0.07 0.26 7.69 -2.39 -0.02 0.24 16 27 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 28 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 29 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.09 1.86 8.04 -2.39 -0.02 1.84 16 31 H 0.41 7.80 8.48 -92.72 -0.79 7.01 16 32 H 0.41 10.51 8.49 -92.72 -0.79 9.72 16 33 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.04 1.98 8.14 -2.39 -0.02 1.97 16 35 H 0.04 1.60 7.20 -2.39 -0.02 1.58 16 36 H 0.03 1.45 7.57 -2.39 -0.02 1.43 16 37 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 38 H 0.18 1.88 6.32 -2.91 -0.02 1.86 16 Total: -1.00 -77.97 329.03 -0.41 -78.38 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -0.54 Total: 17.82 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 6.20 Total: 9.50 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -6.92 Total: -117.67 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -1.04 Total: -32.54 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.88 Total: 44.51 kcal Total: -77.97 -0.41 -78.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279063270.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.880 kcal (2) G-P(sol) polarization free energy of solvation -77.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds