Wall clock time and date at job start Tue Mar 31 2020 00:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47075 * 2 1 4 4 C 1.37086 * 120.00228 * 264.77421 * 3 2 1 5 5 H 1.07999 * 120.00907 * 138.84939 * 4 3 2 6 6 C 1.38958 * 120.00132 * 318.84903 * 4 3 2 7 7 N 1.31415 * 119.99447 * 341.83641 * 6 4 3 8 8 Si 1.86790 * 120.00516 * 161.83448 * 6 4 3 9 9 H 1.48510 * 109.47116 * 59.99927 * 8 6 4 10 10 H 1.48500 * 109.47300 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47247 * 300.00258 * 8 6 4 12 12 C 1.34778 * 119.99610 * 84.77124 * 3 2 1 13 13 O 1.21300 * 119.99623 * 179.97438 * 12 3 2 14 14 C 1.50703 * 120.00312 * 359.97438 * 12 3 2 15 15 C 1.53004 * 109.47012 * 180.02562 * 14 12 3 16 16 C 1.50700 * 109.46888 * 180.02562 * 15 14 12 17 17 O 1.21313 * 120.00071 * 359.97438 * 16 15 14 18 18 C 1.46667 * 119.99795 * 180.02562 * 16 15 14 19 19 C 1.41553 * 126.47791 * 359.97438 * 18 16 15 20 20 N 1.30374 * 107.98373 * 180.02562 * 19 18 16 21 21 N 1.39912 * 109.00560 * 359.75511 * 20 19 18 22 22 C 1.46499 * 125.70230 * 180.29427 * 21 20 19 23 23 C 1.34124 * 108.58964 * 0.42023 * 21 20 19 24 24 H 1.09008 * 109.47292 * 299.99836 * 1 2 3 25 25 H 1.09004 * 109.47571 * 59.99605 * 1 2 3 26 26 H 1.08997 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46968 * 240.00280 * 2 1 3 28 28 H 1.09002 * 109.47145 * 120.00090 * 2 1 3 29 29 H 0.97002 * 119.99888 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.46712 * 60.00175 * 14 12 3 31 31 H 1.08994 * 109.47261 * 300.00223 * 14 12 3 32 32 H 1.09000 * 109.47362 * 59.99971 * 15 14 12 33 33 H 1.09000 * 109.46798 * 299.99954 * 15 14 12 34 34 H 1.08003 * 126.00633 * 0.03839 * 19 18 16 35 35 H 1.08997 * 109.47167 * 270.15010 * 22 21 20 36 36 H 1.09003 * 109.47173 * 30.15385 * 22 21 20 37 37 H 1.09000 * 109.46774 * 150.14971 * 22 21 20 38 38 H 1.08006 * 126.31558 * 179.84289 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3487 1.9915 -1.1822 5 1 2.0742 3.0219 -1.3534 6 6 3.0371 1.2843 -2.1605 7 7 3.6790 0.1819 -1.8451 8 14 3.0499 1.9007 -3.9238 9 1 3.6536 3.2568 -3.9698 10 1 3.8491 0.9748 -4.7660 11 1 1.6578 1.9609 -4.4373 12 6 2.1426 2.0520 1.1624 13 8 2.5474 3.1955 1.1624 14 6 1.7788 1.3814 2.4620 15 6 2.0098 2.3543 3.6201 16 6 1.6465 1.6835 4.9197 17 8 1.2421 0.5397 4.9197 18 6 1.7809 2.4138 6.1845 19 6 2.2354 3.7449 6.3435 20 7 2.2121 4.0290 7.6157 21 7 1.7443 2.9159 8.3226 22 6 1.5671 2.8379 9.7748 23 6 1.4878 1.9313 7.4487 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 4.1598 -0.3116 -2.5279 30 1 2.4002 0.4968 2.6007 31 1 0.7293 1.0881 2.4382 32 1 1.3881 3.2388 3.4811 33 1 3.0592 2.6479 3.6440 34 1 2.5467 4.4085 5.5503 35 1 2.4880 2.4791 10.2344 36 1 1.3276 3.8271 10.1652 37 1 0.7539 2.1497 10.0051 38 1 1.1167 0.9453 7.6868 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280545417.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:58 Heat of formation + Delta-G solvation = 3.915299 kcal Electronic energy + Delta-G solvation = -21181.641628 eV Core-core repulsion = 17833.341244 eV Total energy + Delta-G solvation = -3348.300383 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.45109 -39.03321 -38.13704 -34.92674 -33.71690 -32.40133 -31.64967 -30.49694 -29.32581 -27.80114 -25.85868 -24.13661 -22.40259 -21.89712 -21.03371 -19.38256 -18.49581 -17.38465 -16.65062 -15.91419 -15.88754 -15.29965 -15.14277 -14.76198 -14.59516 -14.17152 -13.97006 -13.69242 -13.16491 -13.00168 -12.82543 -12.80164 -12.51963 -12.18008 -11.77627 -11.41035 -11.30416 -11.08447 -10.95859 -10.80665 -10.68485 -10.31560 -10.20234 -9.97922 -9.79766 -9.44752 -8.83584 -8.82553 -8.29531 -7.33323 -6.24378 -3.92762 1.25022 1.95453 2.14423 3.22558 3.24763 3.29635 3.33186 4.00617 4.04695 4.23582 4.47611 4.55763 4.72997 4.89469 4.99716 5.05150 5.12433 5.24371 5.31539 5.46576 5.65970 5.85387 5.97277 6.08343 6.21286 6.29079 6.34007 6.41587 6.52940 6.55023 6.58497 6.67795 6.96973 7.31902 7.35614 7.65291 7.85006 8.38127 8.60592 9.28022 9.49590 10.12190 10.80831 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.038466 B = 0.003321 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.738153 B = 8429.286170 C = 8868.235146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.103 3.897 3 N -0.442 5.442 4 C -0.309 4.309 5 H 0.087 0.913 6 C 0.038 3.962 7 N -0.873 5.873 8 Si 0.918 3.082 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.462 3.538 13 O -0.585 6.585 14 C -0.125 4.125 15 C -0.140 4.140 16 C 0.430 3.570 17 O -0.475 6.475 18 C -0.318 4.318 19 C 0.098 3.902 20 N -0.305 5.305 21 N -0.367 5.367 22 C 0.096 3.904 23 C 0.121 3.879 24 H 0.043 0.957 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.102 0.898 28 H 0.050 0.950 29 H 0.267 0.733 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.198 0.802 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.410 0.230 18.393 19.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.021 4.021 3 N -0.162 5.162 4 C -0.437 4.437 5 H 0.104 0.896 6 C -0.166 4.166 7 N -0.510 5.510 8 Si 0.744 3.256 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.251 3.749 13 O -0.469 6.469 14 C -0.166 4.166 15 C -0.178 4.178 16 C 0.309 3.691 17 O -0.351 6.351 18 C -0.330 4.330 19 C -0.090 4.090 20 N -0.125 5.125 21 N -0.146 5.146 22 C -0.045 4.045 23 C -0.030 4.030 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.120 0.880 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.215 0.785 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -5.087 0.933 19.334 20.013 hybrid contribution -0.064 -0.514 -1.381 1.475 sum -5.152 0.419 17.953 18.682 Atomic orbital electron populations 1.22217 0.98293 1.00344 1.01448 1.21454 0.91590 0.85627 1.03461 1.43440 1.56077 1.11762 1.04881 1.19322 1.34774 0.98466 0.91124 0.89569 1.25422 0.94143 0.96592 1.00493 1.69928 1.29529 1.17586 1.33992 0.86150 0.78301 0.78796 0.82319 1.19777 1.21055 1.19946 1.20377 0.81754 0.87819 0.84981 1.90499 1.50515 1.18850 1.87075 1.21433 1.03105 0.98972 0.93048 1.21658 1.04714 1.00126 0.91326 1.21685 0.72467 0.86158 0.88806 1.90501 1.36439 1.18589 1.89594 1.21105 1.19432 0.97485 0.95002 1.24337 0.95670 0.94991 0.94024 1.77169 1.21741 1.07693 1.05856 1.48445 1.48847 1.09690 1.07601 1.21977 1.03121 1.04885 0.74473 1.23239 0.95919 0.94611 0.89225 0.93763 0.92555 0.93154 0.88020 0.93159 0.92303 0.89744 0.89999 0.88026 0.87901 0.78539 0.90272 0.88882 0.89116 0.79660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 10.15 37.16 0.38 -2.71 16 2 C 0.10 2.31 5.41 -4.04 -0.02 2.28 16 3 N -0.44 -11.43 2.50 -114.81 -0.29 -11.72 16 4 C -0.31 -8.69 8.84 -14.94 -0.13 -8.82 16 5 H 0.09 2.52 7.82 -52.49 -0.41 2.11 16 6 C 0.04 1.02 4.95 -17.46 -0.09 0.93 16 7 N -0.87 -24.06 11.61 55.50 0.64 -23.42 16 8 Si 0.92 20.93 29.59 -169.99 -5.03 15.90 16 9 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 12 C 0.46 11.39 7.59 -10.98 -0.08 11.31 16 13 O -0.59 -16.08 15.89 5.54 0.09 -15.99 16 14 C -0.13 -2.42 3.60 -27.88 -0.10 -2.52 16 15 C -0.14 -2.28 4.47 -27.88 -0.12 -2.40 16 16 C 0.43 6.43 7.13 -30.91 -0.22 6.21 16 17 O -0.47 -8.14 16.53 5.53 0.09 -8.05 16 18 C -0.32 -4.06 6.11 -105.15 -0.64 -4.70 16 19 C 0.10 1.17 11.55 -16.91 -0.20 0.98 16 20 N -0.30 -3.75 12.49 30.91 0.39 -3.36 16 21 N -0.37 -3.63 3.97 -67.52 -0.27 -3.90 16 22 C 0.10 0.48 11.44 59.85 0.68 1.16 16 23 C 0.12 1.27 11.30 -16.47 -0.19 1.09 16 24 H 0.04 0.78 6.60 -51.92 -0.34 0.44 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.10 2.50 5.76 -51.93 -0.30 2.20 16 28 H 0.05 1.05 6.66 -51.93 -0.35 0.71 16 29 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.08 1.63 7.37 -51.93 -0.38 1.25 16 31 H 0.08 1.50 6.49 -51.93 -0.34 1.16 16 32 H 0.10 1.58 8.10 -51.93 -0.42 1.16 16 33 H 0.10 1.66 8.10 -51.93 -0.42 1.24 16 34 H 0.20 1.96 8.04 -52.48 -0.42 1.54 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.19 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 328.44 15.07 4.95 4.95 Total: -1.00 -34.93 328.44 -5.21 -40.14 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -5.05 Total: 2.64 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -0.73 Total: 2.80 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.47 Total: -42.40 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: 0.18 Total: -24.04 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.93 -5.21 -40.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280545417.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.056 kcal (2) G-P(sol) polarization free energy of solvation -34.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds