Wall clock time and date at job start Tue Mar 31 2020 00:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47075 * 2 1 4 4 C 1.37086 * 120.00228 * 264.77421 * 3 2 1 5 5 H 1.07999 * 120.00907 * 138.84939 * 4 3 2 6 6 C 1.38958 * 120.00132 * 318.84903 * 4 3 2 7 7 N 1.31415 * 119.99447 * 341.83641 * 6 4 3 8 8 Si 1.86790 * 120.00516 * 161.83448 * 6 4 3 9 9 H 1.48510 * 109.47116 * 59.99927 * 8 6 4 10 10 H 1.48500 * 109.47300 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47247 * 300.00258 * 8 6 4 12 12 C 1.34778 * 119.99610 * 84.77124 * 3 2 1 13 13 O 1.21300 * 119.99623 * 179.97438 * 12 3 2 14 14 C 1.50703 * 120.00312 * 359.97438 * 12 3 2 15 15 C 1.53004 * 109.47012 * 180.02562 * 14 12 3 16 16 C 1.50700 * 109.46888 * 180.02562 * 15 14 12 17 17 O 1.21313 * 120.00071 * 359.97438 * 16 15 14 18 18 C 1.46667 * 119.99795 * 180.02562 * 16 15 14 19 19 C 1.41553 * 126.47791 * 359.97438 * 18 16 15 20 20 N 1.30374 * 107.98373 * 180.02562 * 19 18 16 21 21 N 1.39912 * 109.00560 * 359.75511 * 20 19 18 22 22 C 1.46499 * 125.70230 * 180.29427 * 21 20 19 23 23 C 1.34124 * 108.58964 * 0.42023 * 21 20 19 24 24 H 1.09008 * 109.47292 * 299.99836 * 1 2 3 25 25 H 1.09004 * 109.47571 * 59.99605 * 1 2 3 26 26 H 1.08997 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46968 * 240.00280 * 2 1 3 28 28 H 1.09002 * 109.47145 * 120.00090 * 2 1 3 29 29 H 0.97002 * 119.99888 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.46712 * 60.00175 * 14 12 3 31 31 H 1.08994 * 109.47261 * 300.00223 * 14 12 3 32 32 H 1.09000 * 109.47362 * 59.99971 * 15 14 12 33 33 H 1.09000 * 109.46798 * 299.99954 * 15 14 12 34 34 H 1.08003 * 126.00633 * 0.03839 * 19 18 16 35 35 H 1.08997 * 109.47167 * 270.15010 * 22 21 20 36 36 H 1.09003 * 109.47173 * 30.15385 * 22 21 20 37 37 H 1.09000 * 109.46774 * 150.14971 * 22 21 20 38 38 H 1.08006 * 126.31558 * 179.84289 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3487 1.9915 -1.1822 5 1 2.0742 3.0219 -1.3534 6 6 3.0371 1.2843 -2.1605 7 7 3.6790 0.1819 -1.8451 8 14 3.0499 1.9007 -3.9238 9 1 3.6536 3.2568 -3.9698 10 1 3.8491 0.9748 -4.7660 11 1 1.6578 1.9609 -4.4373 12 6 2.1426 2.0520 1.1624 13 8 2.5474 3.1955 1.1624 14 6 1.7788 1.3814 2.4620 15 6 2.0098 2.3543 3.6201 16 6 1.6465 1.6835 4.9197 17 8 1.2421 0.5397 4.9197 18 6 1.7809 2.4138 6.1845 19 6 2.2354 3.7449 6.3435 20 7 2.2121 4.0290 7.6157 21 7 1.7443 2.9159 8.3226 22 6 1.5671 2.8379 9.7748 23 6 1.4878 1.9313 7.4487 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 4.1598 -0.3116 -2.5279 30 1 2.4002 0.4968 2.6007 31 1 0.7293 1.0881 2.4382 32 1 1.3881 3.2388 3.4811 33 1 3.0592 2.6479 3.6440 34 1 2.5467 4.4085 5.5503 35 1 2.4880 2.4791 10.2344 36 1 1.3276 3.8271 10.1652 37 1 0.7539 2.1497 10.0051 38 1 1.1167 0.9453 7.6868 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280545417.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:57 Heat of formation + Delta-G solvation = -18.789781 kcal Electronic energy + Delta-G solvation = -21182.626194 eV Core-core repulsion = 17833.341244 eV Total energy + Delta-G solvation = -3349.284950 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.30892 -40.61456 -39.66421 -36.88291 -34.49627 -34.17052 -33.31637 -31.43027 -31.10614 -28.73275 -27.35376 -25.71521 -23.93429 -23.20284 -21.87816 -20.62068 -20.13222 -18.76267 -18.30699 -17.52249 -17.05485 -16.72823 -16.34162 -16.18341 -15.77668 -15.52886 -15.34129 -15.23051 -14.50787 -14.30830 -13.96049 -13.77870 -13.53685 -13.47692 -13.44892 -13.16965 -12.93536 -12.73119 -12.56018 -12.30899 -12.11798 -12.02102 -11.95035 -11.68842 -10.85124 -10.62971 -10.59556 -10.29146 -9.71144 -9.35946 -8.30201 -6.07047 0.32249 1.02280 1.41974 1.42890 1.49098 1.53380 2.10749 2.19402 2.32581 2.92652 3.04909 3.32881 3.77379 3.83282 3.96693 4.18957 4.20553 4.24938 4.34510 4.41189 4.43443 4.59938 4.64687 4.70119 4.71607 4.85818 4.98283 5.01565 5.09215 5.15544 5.31305 5.43874 5.48674 5.57401 5.87630 6.27452 6.48968 6.59142 6.71701 7.22334 7.51586 8.12591 8.73611 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.038466 B = 0.003321 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.738153 B = 8429.286170 C = 8868.235146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.102 3.898 3 N -0.457 5.457 4 C -0.342 4.342 5 H 0.063 0.937 6 C 0.002 3.998 7 N -0.894 5.894 8 Si 0.983 3.017 9 H -0.277 1.277 10 H -0.273 1.273 11 H -0.263 1.263 12 C 0.450 3.550 13 O -0.623 6.623 14 C -0.111 4.111 15 C -0.137 4.137 16 C 0.443 3.557 17 O -0.501 6.501 18 C -0.346 4.346 19 C 0.094 3.906 20 N -0.330 5.330 21 N -0.361 5.361 22 C 0.085 3.915 23 C 0.137 3.863 24 H 0.053 0.947 25 H 0.043 0.957 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.272 0.728 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.206 0.794 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.121 0.879 38 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.273 -0.580 19.737 20.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.021 4.021 3 N -0.176 5.176 4 C -0.470 4.470 5 H 0.081 0.919 6 C -0.201 4.201 7 N -0.531 5.531 8 Si 0.806 3.194 9 H -0.202 1.202 10 H -0.198 1.198 11 H -0.188 1.188 12 C 0.240 3.760 13 O -0.510 6.510 14 C -0.151 4.151 15 C -0.174 4.174 16 C 0.324 3.676 17 O -0.379 6.379 18 C -0.359 4.359 19 C -0.094 4.094 20 N -0.150 5.150 21 N -0.139 5.139 22 C -0.054 4.054 23 C -0.017 4.017 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.223 0.777 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.139 0.861 38 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -5.959 0.117 20.711 21.551 hybrid contribution 0.233 -0.258 -1.682 1.718 sum -5.726 -0.141 19.028 19.872 Atomic orbital electron populations 1.22102 0.95321 1.02446 1.01296 1.21531 0.93997 0.83731 1.02841 1.43745 1.56214 1.12907 1.04741 1.19337 1.36470 0.98191 0.93030 0.91884 1.26192 0.93182 0.96634 1.04046 1.70003 1.29525 1.18286 1.35323 0.85175 0.78841 0.78029 0.77364 1.20197 1.19794 1.18788 1.21240 0.80877 0.87509 0.86384 1.90457 1.52108 1.20590 1.87870 1.21313 1.03664 0.99053 0.91075 1.21611 1.04813 0.99719 0.91295 1.21461 0.71573 0.85654 0.88917 1.90489 1.38159 1.19469 1.89826 1.20935 1.22075 0.97960 0.94922 1.24533 0.95392 0.95024 0.94408 1.77125 1.22643 1.09192 1.06046 1.48851 1.47140 1.08708 1.09187 1.22424 1.05125 1.06229 0.71650 1.23639 0.94092 0.95464 0.88473 0.92789 0.93788 0.89869 0.90291 0.91991 0.91822 0.89653 0.88677 0.87589 0.88182 0.77705 0.88791 0.88380 0.86073 0.76873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.56 10.15 71.98 0.73 -4.83 16 2 C 0.10 4.58 5.41 86.38 0.47 5.05 16 3 N -0.46 -24.09 2.50 -635.52 -1.59 -25.68 16 4 C -0.34 -19.78 8.84 84.04 0.74 -19.04 16 5 H 0.06 3.85 7.82 -2.91 -0.02 3.82 16 6 C 0.00 0.10 4.95 84.93 0.42 0.52 16 7 N -0.89 -49.62 11.61 21.67 0.25 -49.37 16 8 Si 0.98 43.14 29.59 68.60 2.03 45.17 16 9 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 12 C 0.45 22.64 7.59 87.66 0.67 23.30 16 13 O -0.62 -35.39 15.89 -3.09 -0.05 -35.44 16 14 C -0.11 -4.27 3.60 29.85 0.11 -4.17 16 15 C -0.14 -4.42 4.47 29.85 0.13 -4.29 16 16 C 0.44 12.88 7.13 27.89 0.20 13.07 16 17 O -0.50 -16.55 16.53 -3.13 -0.05 -16.60 16 18 C -0.35 -8.43 6.11 -20.21 -0.12 -8.55 16 19 C 0.09 2.19 11.55 85.73 0.99 3.18 16 20 N -0.33 -7.69 12.49 -56.13 -0.70 -8.39 16 21 N -0.36 -6.27 3.97 -367.52 -1.46 -7.73 16 22 C 0.08 0.57 11.44 127.77 1.46 2.04 16 23 C 0.14 2.53 11.30 84.39 0.95 3.49 16 24 H 0.05 1.83 6.60 -2.38 -0.02 1.82 16 25 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 26 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.08 3.91 5.76 -2.39 -0.01 3.89 16 28 H 0.06 2.57 6.66 -2.39 -0.02 2.56 16 29 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 30 H 0.09 3.27 7.37 -2.39 -0.02 3.25 16 31 H 0.09 3.40 6.49 -2.39 -0.02 3.38 16 32 H 0.11 3.32 8.10 -2.39 -0.02 3.30 16 33 H 0.10 3.28 8.10 -2.39 -0.02 3.27 16 34 H 0.21 4.10 8.04 -2.91 -0.02 4.07 16 35 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.21 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -76.58 328.44 6.24 -70.34 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 1.07 Total: 17.95 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 6.75 Total: 9.77 kcal Atomic # 7 Polarization: -87.68 SS G_CDS: -3.50 Total: -91.18 kcal Atomic # 8 Polarization: -51.94 SS G_CDS: -0.10 Total: -52.04 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -76.58 6.24 -70.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280545417.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.547 kcal (2) G-P(sol) polarization free energy of solvation -76.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds