Wall clock time and date at job start Tue Mar 31 2020 01:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99727 * 2 1 4 4 H 1.08996 * 109.47467 * 30.00597 * 3 2 1 5 5 C 1.50697 * 109.47264 * 270.00256 * 3 2 1 6 6 O 1.21294 * 120.00108 * 355.00451 * 5 3 2 7 7 N 1.34777 * 120.00105 * 175.00270 * 5 3 2 8 8 C 1.37100 * 120.00163 * 180.02562 * 7 5 3 9 9 H 1.07999 * 119.99770 * 222.94757 * 8 7 5 10 10 C 1.38948 * 119.99956 * 42.94683 * 8 7 5 11 11 N 1.31410 * 120.00545 * 19.01103 * 10 8 7 12 12 Si 1.86804 * 119.99756 * 199.01306 * 10 8 7 13 13 H 1.48503 * 109.47157 * 89.99943 * 12 10 8 14 14 H 1.48497 * 109.47207 * 210.00001 * 12 10 8 15 15 H 1.48500 * 109.47369 * 329.99692 * 12 10 8 16 16 C 1.46500 * 119.99762 * 0.02562 * 7 5 3 17 17 C 1.53005 * 117.49431 * 188.22352 * 16 7 5 18 18 C 1.53001 * 60.00049 * 252.50969 * 17 16 7 19 19 C 1.50697 * 109.47020 * 150.00754 * 3 2 1 20 20 C 1.39868 * 126.04298 * 39.68616 * 19 3 2 21 21 N 1.30839 * 108.20703 * 179.82251 * 20 19 3 22 22 N 1.40087 * 108.19947 * 0.43906 * 21 20 19 23 23 C 1.46500 * 126.03366 * 179.73665 * 22 21 20 24 24 C 1.34945 * 107.92700 * 359.72126 * 22 21 20 25 25 H 1.09002 * 109.46862 * 299.99151 * 1 2 3 26 26 H 1.08998 * 109.47827 * 59.99488 * 1 2 3 27 27 H 1.09009 * 109.47182 * 179.97438 * 1 2 3 28 28 H 0.96993 * 120.00382 * 174.95403 * 11 10 8 29 29 H 1.08994 * 115.55026 * 333.92550 * 16 7 5 30 30 H 1.08993 * 117.50365 * 0.02562 * 17 16 7 31 31 H 1.09004 * 117.49551 * 145.01976 * 17 16 7 32 32 H 1.08999 * 117.49941 * 252.51407 * 18 17 16 33 33 H 1.08997 * 117.49626 * 107.48727 * 18 17 16 34 34 H 1.08003 * 125.89552 * 0.02562 * 20 19 3 35 35 H 1.09001 * 109.47414 * 269.97766 * 23 22 21 36 36 H 1.09003 * 109.46982 * 29.98010 * 23 22 21 37 37 H 1.08999 * 109.46865 * 149.97970 * 23 22 21 38 38 H 1.08001 * 126.12656 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2144 1.7644 -1.4208 6 8 1.9789 1.0107 -2.3414 7 7 2.6587 3.0125 -1.6685 8 6 2.8440 3.4303 -2.9611 9 1 3.7254 3.9960 -3.2246 10 6 1.8979 3.1258 -3.9320 11 7 0.6799 2.7823 -3.5779 12 14 2.3573 3.2046 -5.7410 13 1 2.8698 1.8816 -6.1796 14 1 1.1582 3.5610 -6.5412 15 1 3.4091 4.2337 -5.9403 16 6 2.9436 3.9228 -0.5565 17 6 3.2583 5.3803 -0.8996 18 6 4.3742 4.4485 -0.4227 19 6 3.3386 1.2639 0.7102 20 6 4.2897 0.2426 0.6176 21 7 5.3094 0.5639 1.3719 22 7 5.0345 1.7970 1.9771 23 6 5.9114 2.5164 2.9043 24 6 3.8195 2.2053 1.5550 25 1 -0.3633 0.5137 0.8901 26 1 -0.3635 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.0004 2.6410 -4.2547 29 1 2.3902 3.7300 0.3624 30 1 3.2530 5.6620 -1.9525 31 1 2.9118 6.1466 -0.2062 32 1 4.7619 4.6018 0.5844 33 1 5.1034 4.1170 -1.1620 34 1 4.1995 -0.6547 0.0233 35 1 5.6903 2.2087 3.9264 36 1 6.9515 2.2870 2.6727 37 1 5.7448 3.5889 2.8037 38 1 3.3206 3.1198 1.8399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281734262.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:54 Heat of formation + Delta-G solvation = 59.340744 kcal Electronic energy + Delta-G solvation = -23161.678187 eV Core-core repulsion = 19815.781231 eV Total energy + Delta-G solvation = -3345.896956 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.98465 -38.68384 -37.03605 -35.60745 -33.13000 -32.70267 -31.29384 -30.38705 -27.84389 -25.87975 -25.66456 -23.93980 -21.77299 -21.43959 -20.66053 -20.31987 -19.12645 -17.17341 -16.46663 -16.07164 -15.53752 -15.19639 -14.79375 -14.53183 -14.40547 -13.95295 -13.69149 -13.40445 -13.06169 -12.85703 -12.52111 -12.43034 -12.28547 -11.72734 -11.66473 -11.06940 -10.95298 -10.84466 -10.81000 -10.58845 -10.18329 -10.04654 -9.98875 -9.75095 -9.53424 -9.04993 -8.65090 -8.36712 -7.52877 -6.95111 -6.08341 -3.81411 2.17415 2.75912 3.15520 3.33064 3.40001 3.44395 4.07710 4.21421 4.43535 4.74533 4.81909 4.97972 5.02338 5.15401 5.33812 5.37133 5.46013 5.51982 5.58040 5.66943 5.73261 5.80425 5.86210 6.02152 6.06231 6.18015 6.26957 6.33432 6.37171 6.44414 6.73378 6.92900 6.98207 7.23776 7.63567 7.71027 8.02465 8.31241 9.10035 9.22966 9.70766 10.35587 11.01151 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017489 B = 0.007620 C = 0.006184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.636317 B = 3673.820615 C = 4526.412753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.361 6.361 3 C 0.156 3.844 4 H 0.067 0.933 5 C 0.471 3.529 6 O -0.515 6.515 7 N -0.423 5.423 8 C -0.347 4.347 9 H 0.076 0.924 10 C 0.074 3.926 11 N -0.835 5.835 12 Si 0.911 3.089 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.275 1.275 16 C 0.081 3.919 17 C -0.179 4.179 18 C -0.201 4.201 19 C -0.215 4.215 20 C 0.083 3.917 21 N -0.307 5.307 22 N -0.380 5.380 23 C 0.106 3.894 24 C 0.070 3.930 25 H 0.031 0.969 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.263 0.737 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.183 0.817 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.824 2.655 12.964 13.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.279 6.279 3 C 0.093 3.907 4 H 0.085 0.915 5 C 0.257 3.743 6 O -0.391 6.391 7 N -0.145 5.145 8 C -0.474 4.474 9 H 0.094 0.906 10 C -0.136 4.136 11 N -0.468 5.468 12 Si 0.739 3.261 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.200 1.200 16 C -0.025 4.025 17 C -0.217 4.217 18 C -0.240 4.240 19 C -0.227 4.227 20 C -0.103 4.103 21 N -0.128 5.128 22 N -0.162 5.162 23 C -0.035 4.035 24 C -0.077 4.077 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.115 0.885 30 H 0.125 0.875 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.200 0.800 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.871 1.663 12.924 13.911 hybrid contribution -0.907 0.775 -1.123 1.638 sum 3.963 2.438 11.801 12.686 Atomic orbital electron populations 1.22725 0.81269 1.02031 1.00051 1.87837 1.19411 1.25849 1.94761 1.20043 0.90598 0.85514 0.94574 0.91516 1.20147 0.82652 0.82233 0.89233 1.90540 1.50269 1.53081 1.45168 1.42729 1.60363 1.07899 1.03552 1.18835 1.05849 1.39763 0.82922 0.90632 1.25179 0.94054 0.94886 0.99476 1.69811 1.01403 1.41391 1.34214 0.86233 0.77773 0.78471 0.83651 1.20316 1.21344 1.20007 1.21723 0.96006 0.91933 0.92856 1.23142 1.02650 0.92918 1.02955 1.23222 0.93711 1.06264 1.00784 1.19558 0.99062 0.98036 1.06037 1.23665 0.90239 0.99557 0.96876 1.77320 1.23539 0.97286 1.14684 1.48288 1.14305 1.16774 1.36830 1.21752 0.94703 0.95736 0.91352 1.22125 0.87956 0.99814 0.97759 0.95082 0.92829 0.90249 0.92666 0.88469 0.87453 0.89945 0.90509 0.89251 0.80033 0.91211 0.89583 0.89777 0.81270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 10.81 101.05 1.09 1.73 16 2 O -0.36 -7.54 9.66 -55.09 -0.53 -8.07 16 3 C 0.16 3.21 2.20 -29.04 -0.06 3.15 16 4 H 0.07 1.26 6.94 -51.93 -0.36 0.89 16 5 C 0.47 12.14 6.34 -10.99 -0.07 12.07 16 6 O -0.51 -15.56 14.17 -14.31 -0.20 -15.77 16 7 N -0.42 -10.54 2.85 -107.73 -0.31 -10.85 16 8 C -0.35 -9.51 7.81 -14.93 -0.12 -9.62 16 9 H 0.08 2.03 7.43 -52.49 -0.39 1.64 16 10 C 0.07 2.10 4.36 -17.47 -0.08 2.02 16 11 N -0.83 -24.59 11.67 55.50 0.65 -23.94 16 12 Si 0.91 22.22 29.60 -169.99 -5.03 17.19 16 13 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 C 0.08 1.58 4.28 -67.93 -0.29 1.28 16 17 C -0.18 -3.12 9.81 -26.73 -0.26 -3.38 16 18 C -0.20 -3.36 9.13 -26.73 -0.24 -3.61 16 19 C -0.22 -3.94 4.55 -105.06 -0.48 -4.42 16 20 C 0.08 1.54 11.70 -17.36 -0.20 1.34 16 21 N -0.31 -5.36 12.58 30.62 0.39 -4.98 16 22 N -0.38 -5.44 4.01 -68.16 -0.27 -5.72 16 23 C 0.11 0.96 11.47 59.85 0.69 1.65 16 24 C 0.07 1.04 8.19 -17.22 -0.14 0.89 16 25 H 0.03 0.46 8.09 -51.93 -0.42 0.04 16 26 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 28 H 0.26 7.45 8.32 -40.82 -0.34 7.11 16 29 H 0.10 1.65 4.80 -51.93 -0.25 1.40 16 30 H 0.11 2.13 6.85 -51.93 -0.36 1.77 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.08 1.04 7.84 -51.93 -0.41 0.63 16 33 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 34 H 0.18 3.32 8.06 -52.48 -0.42 2.89 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.17 2.01 6.55 -52.49 -0.34 1.66 16 LS Contribution 318.37 15.07 4.80 4.80 Total: -1.00 -35.47 318.37 -5.73 -41.20 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.04 Total: 3.04 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -0.17 Total: 3.10 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.45 Total: -45.49 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.74 Total: -23.84 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.47 -5.73 -41.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281734262.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.538 kcal (2) G-P(sol) polarization free energy of solvation -35.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds