Wall clock time and date at job start Tue Mar 31 2020 01:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99727 * 2 1 4 4 H 1.08996 * 109.47467 * 30.00597 * 3 2 1 5 5 C 1.50697 * 109.47264 * 270.00256 * 3 2 1 6 6 O 1.21294 * 120.00108 * 355.00451 * 5 3 2 7 7 N 1.34777 * 120.00105 * 175.00270 * 5 3 2 8 8 C 1.37100 * 120.00163 * 180.02562 * 7 5 3 9 9 H 1.07999 * 119.99770 * 222.94757 * 8 7 5 10 10 C 1.38948 * 119.99956 * 42.94683 * 8 7 5 11 11 N 1.31410 * 120.00545 * 19.01103 * 10 8 7 12 12 Si 1.86804 * 119.99756 * 199.01306 * 10 8 7 13 13 H 1.48503 * 109.47157 * 89.99943 * 12 10 8 14 14 H 1.48497 * 109.47207 * 210.00001 * 12 10 8 15 15 H 1.48500 * 109.47369 * 329.99692 * 12 10 8 16 16 C 1.46500 * 119.99762 * 0.02562 * 7 5 3 17 17 C 1.53005 * 117.49431 * 188.22352 * 16 7 5 18 18 C 1.53001 * 60.00049 * 252.50969 * 17 16 7 19 19 C 1.50697 * 109.47020 * 150.00754 * 3 2 1 20 20 C 1.39868 * 126.04298 * 39.68616 * 19 3 2 21 21 N 1.30839 * 108.20703 * 179.82251 * 20 19 3 22 22 N 1.40087 * 108.19947 * 0.43906 * 21 20 19 23 23 C 1.46500 * 126.03366 * 179.73665 * 22 21 20 24 24 C 1.34945 * 107.92700 * 359.72126 * 22 21 20 25 25 H 1.09002 * 109.46862 * 299.99151 * 1 2 3 26 26 H 1.08998 * 109.47827 * 59.99488 * 1 2 3 27 27 H 1.09009 * 109.47182 * 179.97438 * 1 2 3 28 28 H 0.96993 * 120.00382 * 174.95403 * 11 10 8 29 29 H 1.08994 * 115.55026 * 333.92550 * 16 7 5 30 30 H 1.08993 * 117.50365 * 0.02562 * 17 16 7 31 31 H 1.09004 * 117.49551 * 145.01976 * 17 16 7 32 32 H 1.08999 * 117.49941 * 252.51407 * 18 17 16 33 33 H 1.08997 * 117.49626 * 107.48727 * 18 17 16 34 34 H 1.08003 * 125.89552 * 0.02562 * 20 19 3 35 35 H 1.09001 * 109.47414 * 269.97766 * 23 22 21 36 36 H 1.09003 * 109.46982 * 29.98010 * 23 22 21 37 37 H 1.08999 * 109.46865 * 149.97970 * 23 22 21 38 38 H 1.08001 * 126.12656 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2144 1.7644 -1.4208 6 8 1.9789 1.0107 -2.3414 7 7 2.6587 3.0125 -1.6685 8 6 2.8440 3.4303 -2.9611 9 1 3.7254 3.9960 -3.2246 10 6 1.8979 3.1258 -3.9320 11 7 0.6799 2.7823 -3.5779 12 14 2.3573 3.2046 -5.7410 13 1 2.8698 1.8816 -6.1796 14 1 1.1582 3.5610 -6.5412 15 1 3.4091 4.2337 -5.9403 16 6 2.9436 3.9228 -0.5565 17 6 3.2583 5.3803 -0.8996 18 6 4.3742 4.4485 -0.4227 19 6 3.3386 1.2639 0.7102 20 6 4.2897 0.2426 0.6176 21 7 5.3094 0.5639 1.3719 22 7 5.0345 1.7970 1.9771 23 6 5.9114 2.5164 2.9043 24 6 3.8195 2.2053 1.5550 25 1 -0.3633 0.5137 0.8901 26 1 -0.3635 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.0004 2.6410 -4.2547 29 1 2.3902 3.7300 0.3624 30 1 3.2530 5.6620 -1.9525 31 1 2.9118 6.1466 -0.2062 32 1 4.7619 4.6018 0.5844 33 1 5.1034 4.1170 -1.1620 34 1 4.1995 -0.6547 0.0233 35 1 5.6903 2.2087 3.9264 36 1 6.9515 2.2870 2.6727 37 1 5.7448 3.5889 2.8037 38 1 3.3206 3.1198 1.8399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281734262.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:53 Heat of formation + Delta-G solvation = 34.340700 kcal Electronic energy + Delta-G solvation = -23162.762270 eV Core-core repulsion = 19815.781231 eV Total energy + Delta-G solvation = -3346.981039 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.25717 -40.39654 -38.59131 -37.34312 -34.69403 -34.24738 -32.96555 -31.98988 -29.09089 -27.47050 -27.03931 -25.62217 -23.18079 -22.94683 -22.01903 -21.69395 -20.81000 -18.71011 -18.06146 -17.75911 -17.09829 -16.63399 -16.29290 -16.04476 -15.87894 -15.49978 -15.16409 -15.01943 -14.69305 -14.07772 -13.84862 -13.73380 -13.51049 -13.33693 -13.02743 -12.90241 -12.76614 -12.62417 -12.23604 -12.21499 -12.04078 -11.66782 -11.43595 -11.27729 -11.10106 -10.64542 -10.24631 -9.92218 -9.14452 -8.87583 -8.18361 -5.93653 0.98409 1.33666 1.43500 1.46673 1.73838 1.76716 2.27832 2.41685 2.80151 3.14772 3.31682 3.46640 3.76854 3.86958 4.11187 4.12683 4.19058 4.33740 4.38959 4.41644 4.47873 4.56535 4.58633 4.69110 4.78710 4.87745 4.91588 4.92444 5.05764 5.08037 5.31231 5.49929 5.52476 5.62384 6.14971 6.20595 6.28406 6.75692 7.06427 7.28240 7.74451 8.42485 8.90356 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017489 B = 0.007620 C = 0.006184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.636317 B = 3673.820615 C = 4526.412753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.381 6.381 3 C 0.170 3.830 4 H 0.088 0.912 5 C 0.456 3.544 6 O -0.579 6.579 7 N -0.437 5.437 8 C -0.354 4.354 9 H 0.073 0.927 10 C 0.024 3.976 11 N -0.867 5.867 12 Si 0.963 3.037 13 H -0.296 1.296 14 H -0.278 1.278 15 H -0.255 1.255 16 C 0.052 3.948 17 C -0.173 4.173 18 C -0.175 4.175 19 C -0.247 4.247 20 C 0.059 3.941 21 N -0.326 5.326 22 N -0.367 5.367 23 C 0.091 3.909 24 C 0.095 3.905 25 H 0.065 0.935 26 H 0.015 0.985 27 H 0.101 0.899 28 H 0.258 0.742 29 H 0.129 0.871 30 H 0.075 0.925 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.059 0.941 34 H 0.166 0.834 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.895 5.010 16.037 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.299 6.299 3 C 0.108 3.892 4 H 0.106 0.894 5 C 0.244 3.756 6 O -0.460 6.460 7 N -0.158 5.158 8 C -0.482 4.482 9 H 0.091 0.909 10 C -0.182 4.182 11 N -0.503 5.503 12 Si 0.789 3.211 13 H -0.223 1.223 14 H -0.204 1.204 15 H -0.179 1.179 16 C -0.053 4.053 17 C -0.210 4.210 18 C -0.214 4.214 19 C -0.259 4.259 20 C -0.126 4.126 21 N -0.148 5.148 22 N -0.149 5.149 23 C -0.048 4.048 24 C -0.054 4.054 25 H 0.083 0.917 26 H 0.034 0.966 27 H 0.120 0.880 28 H 0.068 0.932 29 H 0.146 0.854 30 H 0.094 0.906 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.078 0.922 34 H 0.183 0.817 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.138 0.862 38 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 5.989 4.069 16.037 17.596 hybrid contribution -1.124 0.090 -1.961 2.262 sum 4.865 4.159 14.076 15.463 Atomic orbital electron populations 1.22853 0.79979 1.03543 0.99750 1.87826 1.20974 1.26508 1.94571 1.19835 0.92405 0.85584 0.91423 0.89427 1.21189 0.81393 0.81959 0.91060 1.90482 1.53017 1.54852 1.47635 1.42921 1.59818 1.08800 1.04270 1.19029 1.05403 1.38870 0.84897 0.90929 1.25928 0.94140 0.95041 1.03089 1.69907 1.02190 1.43347 1.34833 0.85422 0.78222 0.77772 0.79699 1.22332 1.20360 1.17914 1.22083 0.98703 0.92236 0.92267 1.23203 1.02689 0.92799 1.02320 1.23202 0.91650 1.04080 1.02431 1.19483 0.98414 0.99667 1.08366 1.23564 0.91302 0.99909 0.97865 1.77257 1.23268 0.99194 1.15114 1.48733 1.14557 1.15584 1.35997 1.22292 0.94014 0.97221 0.91282 1.22564 0.87596 0.99674 0.95535 0.91680 0.96578 0.88030 0.93248 0.85388 0.90627 0.85733 0.85639 0.92249 0.81705 0.88892 0.89293 0.86221 0.77203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.24 10.81 113.37 1.23 2.46 16 2 O -0.38 -16.17 9.66 -129.99 -1.26 -17.42 16 3 C 0.17 6.97 2.20 29.10 0.06 7.03 16 4 H 0.09 3.12 6.94 -2.39 -0.02 3.11 16 5 C 0.46 24.06 6.34 87.66 0.56 24.62 16 6 O -0.58 -36.90 14.17 15.91 0.23 -36.68 16 7 N -0.44 -21.87 2.85 -613.12 -1.75 -23.62 16 8 C -0.35 -19.85 7.81 84.04 0.66 -19.19 16 9 H 0.07 3.98 7.43 -2.91 -0.02 3.96 16 10 C 0.02 1.42 4.36 84.93 0.37 1.79 16 11 N -0.87 -53.16 11.67 21.66 0.25 -52.91 16 12 Si 0.96 47.00 29.60 68.60 2.03 49.03 16 13 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 14 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 15 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 16 C 0.05 1.88 4.28 44.99 0.19 2.07 16 17 C -0.17 -5.46 9.81 30.60 0.30 -5.16 16 18 C -0.17 -5.18 9.13 30.60 0.28 -4.90 16 19 C -0.25 -8.71 4.55 -20.15 -0.09 -8.80 16 20 C 0.06 2.20 11.70 85.24 1.00 3.19 16 21 N -0.33 -10.92 12.58 -57.02 -0.72 -11.64 16 22 N -0.37 -9.06 4.01 -369.56 -1.48 -10.54 16 23 C 0.09 1.16 11.47 127.77 1.47 2.62 16 24 C 0.09 2.41 8.19 83.54 0.68 3.10 16 25 H 0.06 1.83 8.09 -2.39 -0.02 1.81 16 26 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.10 3.05 8.14 -2.38 -0.02 3.03 16 28 H 0.26 15.30 8.32 -92.71 -0.77 14.53 16 29 H 0.13 3.75 4.80 -2.39 -0.01 3.74 16 30 H 0.08 2.91 6.85 -2.39 -0.02 2.90 16 31 H 0.12 2.90 8.14 -2.38 -0.02 2.88 16 32 H 0.13 2.50 7.84 -2.39 -0.02 2.48 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.17 6.46 8.06 -2.91 -0.02 6.43 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.21 3.52 6.55 -2.91 -0.02 3.50 16 Total: -1.00 -83.79 318.37 5.07 -78.72 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 1.07 Total: 16.24 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 6.70 Total: 8.83 kcal Atomic # 7 Polarization: -95.02 SS G_CDS: -3.70 Total: -98.72 kcal Atomic # 8 Polarization: -53.07 SS G_CDS: -1.03 Total: -54.10 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -83.79 5.07 -78.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281734262.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.058 kcal (2) G-P(sol) polarization free energy of solvation -83.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds