Wall clock time and date at job start Tue Mar 31 2020 02:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35676 * 117.00594 * 2 1 4 4 C 1.38653 * 119.65248 * 180.02562 * 3 2 1 5 5 C 1.39130 * 119.02815 * 180.25242 * 4 3 2 6 6 N 1.39550 * 120.82772 * 179.72563 * 5 4 3 7 7 C 1.34779 * 120.00153 * 212.44881 * 6 5 4 8 8 O 1.21574 * 119.99726 * 5.30286 * 7 6 5 9 9 N 1.34772 * 120.00042 * 185.29489 * 7 6 5 10 10 C 1.46500 * 119.99863 * 180.02562 * 9 7 6 11 11 C 1.53007 * 109.47175 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46774 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.46926 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99628 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00474 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99521 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00460 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46761 * 90.00125 * 17 15 13 19 19 H 1.48499 * 109.47436 * 210.00364 * 17 15 13 20 20 H 1.48503 * 109.47068 * 330.00806 * 17 15 13 21 21 C 1.39566 * 118.34151 * 359.50551 * 5 4 3 22 22 C 1.37793 * 119.20385 * 0.51401 * 21 5 4 23 23 N 1.32062 * 120.90668 * 359.72866 * 22 21 5 24 24 H 1.08997 * 109.46887 * 300.00646 * 1 2 3 25 25 H 1.08996 * 109.46790 * 59.99732 * 1 2 3 26 26 H 1.08992 * 109.47399 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.48574 * 359.97193 * 4 3 2 28 28 H 0.97001 * 119.99990 * 32.44917 * 6 5 4 29 29 H 0.97003 * 120.00177 * 0.02562 * 9 7 6 30 30 H 1.08998 * 109.47311 * 300.00027 * 10 9 7 31 31 H 1.08998 * 109.47078 * 60.00048 * 10 9 7 32 32 H 1.08998 * 109.46773 * 300.00050 * 11 10 9 33 33 H 1.08994 * 109.46629 * 59.99978 * 11 10 9 34 34 H 1.08998 * 109.47377 * 299.99515 * 12 11 10 35 35 H 1.08993 * 109.47240 * 60.00197 * 12 11 10 36 36 H 0.97001 * 119.99836 * 179.97438 * 16 15 13 37 37 H 1.08001 * 120.39563 * 180.24412 * 21 5 4 38 38 H 1.08003 * 119.54804 * 179.75074 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 6 3.4302 1.2728 -0.0005 5 6 4.0484 2.5192 0.0048 6 7 5.4397 2.6274 0.0102 7 6 6.0329 3.6601 0.6412 8 8 5.3637 4.4435 1.2865 9 7 7.3680 3.8241 0.5570 10 6 8.0128 4.9463 1.2434 11 6 9.5207 4.9021 0.9875 12 6 10.1941 6.0738 1.7049 13 6 11.6792 6.0307 1.4524 14 1 12.1006 5.2458 0.8416 15 6 12.5001 6.9931 2.0009 16 7 11.9870 7.9485 2.7449 17 14 14.3409 6.9393 1.6885 18 1 14.6585 7.7199 0.4658 19 1 15.0575 7.5250 2.8498 20 1 14.7702 5.5300 1.5013 21 6 3.2424 3.6586 0.0000 22 6 1.8722 3.5129 0.0009 23 7 1.3175 2.3144 0.0009 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 4.0204 0.3685 -0.0005 28 1 5.9798 1.9593 -0.4402 29 1 7.9019 3.1992 0.0419 30 1 7.6078 5.8848 0.8650 31 1 7.8234 4.8744 2.3143 32 1 9.9260 3.9636 1.3656 33 1 9.7096 4.9743 -0.0835 34 1 9.7889 7.0125 1.3271 35 1 10.0051 6.0012 2.7758 36 1 12.5645 8.6254 3.1312 37 1 3.6873 4.6427 -0.0001 38 1 1.2432 4.3909 0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287491381.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:02 Heat of formation + Delta-G solvation = -38.852841 kcal Electronic energy + Delta-G solvation = -20277.931452 eV Core-core repulsion = 16927.776503 eV Total energy + Delta-G solvation = -3350.154949 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.15972 -40.01470 -38.05670 -35.89099 -35.07357 -33.43687 -31.67881 -31.02693 -30.34199 -27.52766 -26.71844 -23.81872 -23.75936 -22.54893 -21.09297 -20.53347 -18.94757 -18.48013 -17.00902 -16.59165 -16.32219 -16.16633 -16.00083 -15.52043 -15.00439 -14.53363 -14.44639 -14.27012 -14.01712 -13.88547 -13.55684 -12.53887 -12.33462 -12.08367 -11.91166 -11.88421 -11.50035 -11.06822 -10.92634 -10.80860 -10.64273 -10.44341 -9.93778 -9.82548 -9.50710 -9.17526 -9.12049 -8.80527 -8.61998 -8.40870 -6.05425 -4.08785 0.93103 1.10268 2.29973 2.96434 3.03637 3.28314 3.34964 3.37432 3.65574 4.03155 4.15628 4.41351 4.74908 4.90094 4.98066 5.02597 5.05459 5.27540 5.30458 5.35810 5.54457 5.62328 5.70191 5.88678 5.93910 6.07961 6.32445 6.44535 6.52420 6.61228 6.82827 6.93286 7.00960 7.58880 7.69341 7.70784 7.79586 7.92810 8.32844 8.39967 8.97730 9.55627 11.05782 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.064356 B = 0.002280 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.976661 B =12277.555868 C =12575.339205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.310 6.310 3 C 0.336 3.664 4 C -0.229 4.229 5 C 0.253 3.747 6 N -0.685 5.685 7 C 0.700 3.300 8 O -0.568 6.568 9 N -0.732 5.732 10 C 0.133 3.867 11 C -0.121 4.121 12 C 0.024 3.976 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.893 5.893 17 Si 0.894 3.106 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.210 4.210 22 C 0.156 3.844 23 N -0.557 5.557 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.094 0.906 27 H 0.142 0.858 28 H 0.410 0.590 29 H 0.397 0.603 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.261 0.739 37 H 0.152 0.848 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.708 -14.755 -8.053 25.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.217 6.217 3 C 0.157 3.843 4 C -0.253 4.253 5 C 0.148 3.852 6 N -0.333 5.333 7 C 0.400 3.600 8 O -0.444 6.444 9 N -0.385 5.385 10 C 0.010 3.990 11 C -0.159 4.159 12 C -0.014 4.014 13 C -0.562 4.562 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.532 5.532 17 Si 0.722 3.278 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.233 4.233 22 C 0.001 3.999 23 N -0.283 5.283 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.112 0.888 27 H 0.160 0.840 28 H 0.247 0.753 29 H 0.231 0.769 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.169 0.831 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -20.947 -14.150 -7.323 26.318 hybrid contribution 2.299 -0.416 -0.544 2.399 sum -18.648 -14.566 -7.867 24.936 Atomic orbital electron populations 1.22837 0.77177 1.02776 1.02544 1.86209 1.22928 1.24596 1.87968 1.19368 0.88500 0.84767 0.91673 1.20556 0.92627 0.97647 1.14438 1.17361 0.82546 0.92818 0.92481 1.42627 1.04635 1.28696 1.57300 1.15968 0.82860 0.81223 0.79953 1.90962 1.63210 1.45335 1.44862 1.45442 1.04954 1.32552 1.55580 1.21636 0.93782 0.86958 0.96636 1.21909 0.90711 1.02037 1.01236 1.19029 0.94859 0.91857 0.95631 1.21186 0.92231 1.11329 1.31428 0.92638 1.25034 0.98864 0.95471 0.95129 1.69963 1.35416 1.14443 1.33355 0.86572 0.85312 0.78192 0.77773 1.20653 1.21188 1.19907 1.22083 0.94293 0.99934 1.06984 1.22254 0.92262 0.93505 0.91891 1.67340 1.40824 0.98729 1.21366 0.92261 0.92290 0.88755 0.83979 0.75346 0.76902 0.91522 0.91565 0.92641 0.92620 0.96190 0.96188 0.92885 0.83072 0.81979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.38 101.05 1.05 1.36 16 2 O -0.31 -3.25 10.47 -18.73 -0.20 -3.45 16 3 C 0.34 3.87 7.48 -17.17 -0.13 3.74 16 4 C -0.23 -2.42 9.98 -39.10 -0.39 -2.81 16 5 C 0.25 2.92 6.32 -83.52 -0.53 2.39 16 6 N -0.68 -7.15 5.35 -14.09 -0.08 -7.23 16 7 C 0.70 9.78 8.33 -86.92 -0.72 9.05 16 8 O -0.57 -10.13 14.04 5.30 0.07 -10.06 16 9 N -0.73 -9.51 5.56 -65.23 -0.36 -9.87 16 10 C 0.13 2.18 5.67 -4.04 -0.02 2.16 16 11 C -0.12 -2.23 5.27 -26.73 -0.14 -2.38 16 12 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 13 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 14 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 17 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 C -0.21 -2.53 8.73 -39.25 -0.34 -2.87 16 22 C 0.16 1.68 11.17 -17.62 -0.20 1.48 16 23 N -0.56 -6.49 9.21 -13.41 -0.12 -6.62 16 24 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 25 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 28 H 0.41 2.80 8.84 -40.82 -0.36 2.44 16 29 H 0.40 3.91 8.49 -40.82 -0.35 3.56 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.15 2.00 6.48 -52.49 -0.34 1.66 16 38 H 0.16 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 330.84 15.07 4.99 4.99 Total: -1.00 -33.38 330.84 -7.19 -40.57 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.24 Total: 1.75 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -1.97 Total: -0.56 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.17 Total: -49.40 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.12 Total: -13.51 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.38 -7.19 -40.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287491381.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.717 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds