Wall clock time and date at job start Tue Mar 31 2020 02:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35676 * 117.00594 * 2 1 4 4 C 1.38653 * 119.65248 * 180.02562 * 3 2 1 5 5 C 1.39130 * 119.02815 * 180.25242 * 4 3 2 6 6 N 1.39550 * 120.82772 * 179.72563 * 5 4 3 7 7 C 1.34779 * 120.00153 * 212.44881 * 6 5 4 8 8 O 1.21574 * 119.99726 * 5.30286 * 7 6 5 9 9 N 1.34772 * 120.00042 * 185.29489 * 7 6 5 10 10 C 1.46500 * 119.99863 * 180.02562 * 9 7 6 11 11 C 1.53007 * 109.47175 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46774 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.46926 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99628 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00474 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99521 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00460 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46761 * 90.00125 * 17 15 13 19 19 H 1.48499 * 109.47436 * 210.00364 * 17 15 13 20 20 H 1.48503 * 109.47068 * 330.00806 * 17 15 13 21 21 C 1.39566 * 118.34151 * 359.50551 * 5 4 3 22 22 C 1.37793 * 119.20385 * 0.51401 * 21 5 4 23 23 N 1.32062 * 120.90668 * 359.72866 * 22 21 5 24 24 H 1.08997 * 109.46887 * 300.00646 * 1 2 3 25 25 H 1.08996 * 109.46790 * 59.99732 * 1 2 3 26 26 H 1.08992 * 109.47399 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.48574 * 359.97193 * 4 3 2 28 28 H 0.97001 * 119.99990 * 32.44917 * 6 5 4 29 29 H 0.97003 * 120.00177 * 0.02562 * 9 7 6 30 30 H 1.08998 * 109.47311 * 300.00027 * 10 9 7 31 31 H 1.08998 * 109.47078 * 60.00048 * 10 9 7 32 32 H 1.08998 * 109.46773 * 300.00050 * 11 10 9 33 33 H 1.08994 * 109.46629 * 59.99978 * 11 10 9 34 34 H 1.08998 * 109.47377 * 299.99515 * 12 11 10 35 35 H 1.08993 * 109.47240 * 60.00197 * 12 11 10 36 36 H 0.97001 * 119.99836 * 179.97438 * 16 15 13 37 37 H 1.08001 * 120.39563 * 180.24412 * 21 5 4 38 38 H 1.08003 * 119.54804 * 179.75074 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 6 3.4302 1.2728 -0.0005 5 6 4.0484 2.5192 0.0048 6 7 5.4397 2.6274 0.0102 7 6 6.0329 3.6601 0.6412 8 8 5.3637 4.4435 1.2865 9 7 7.3680 3.8241 0.5570 10 6 8.0128 4.9463 1.2434 11 6 9.5207 4.9021 0.9875 12 6 10.1941 6.0738 1.7049 13 6 11.6792 6.0307 1.4524 14 1 12.1006 5.2458 0.8416 15 6 12.5001 6.9931 2.0009 16 7 11.9870 7.9485 2.7449 17 14 14.3409 6.9393 1.6885 18 1 14.6585 7.7199 0.4658 19 1 15.0575 7.5250 2.8498 20 1 14.7702 5.5300 1.5013 21 6 3.2424 3.6586 0.0000 22 6 1.8722 3.5129 0.0009 23 7 1.3175 2.3144 0.0009 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 4.0204 0.3685 -0.0005 28 1 5.9798 1.9593 -0.4402 29 1 7.9019 3.1992 0.0419 30 1 7.6078 5.8848 0.8650 31 1 7.8234 4.8744 2.3143 32 1 9.9260 3.9636 1.3656 33 1 9.7096 4.9743 -0.0835 34 1 9.7889 7.0125 1.3271 35 1 10.0051 6.0012 2.7758 36 1 12.5645 8.6254 3.1312 37 1 3.6873 4.6427 -0.0001 38 1 1.2432 4.3909 0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287491381.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:01 Heat of formation + Delta-G solvation = -64.183262 kcal Electronic energy + Delta-G solvation = -20279.029861 eV Core-core repulsion = 16927.776503 eV Total energy + Delta-G solvation = -3351.253359 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.09088 -40.99228 -38.89945 -37.17750 -36.20520 -35.24497 -33.21698 -31.98439 -31.38779 -28.60305 -28.04516 -25.32738 -24.60860 -23.77203 -22.35741 -21.94936 -19.84777 -19.55700 -18.50162 -17.85801 -17.33707 -17.08646 -16.94638 -16.62629 -16.51333 -16.00829 -15.67528 -15.43481 -14.94998 -14.83263 -14.41185 -14.25695 -13.74447 -13.58414 -13.31239 -12.76924 -12.71544 -12.54144 -12.37229 -12.30672 -11.97087 -11.71528 -11.65078 -11.38438 -11.18062 -10.70352 -10.54202 -10.28082 -9.72236 -9.51154 -8.18592 -6.29686 0.07730 0.21398 1.31303 1.42888 1.43692 1.54622 1.93166 2.20015 2.42621 2.78761 3.06487 3.15426 3.38983 3.91154 4.08226 4.12858 4.16659 4.24207 4.47943 4.48176 4.52762 4.57109 4.73038 4.83860 4.93549 4.96693 5.02775 5.09935 5.18843 5.38501 5.53601 5.55787 5.72983 5.81675 5.86143 6.22598 6.23616 6.84583 6.84956 6.88928 7.33017 7.39880 8.93350 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.064356 B = 0.002280 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.976661 B =12277.555868 C =12575.339205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.317 6.317 3 C 0.324 3.676 4 C -0.223 4.223 5 C 0.241 3.759 6 N -0.666 5.666 7 C 0.701 3.299 8 O -0.609 6.609 9 N -0.718 5.718 10 C 0.148 3.852 11 C -0.101 4.101 12 C 0.022 3.978 13 C -0.540 4.540 14 H 0.067 0.933 15 C -0.005 4.005 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.260 1.260 21 C -0.225 4.225 22 C 0.156 3.844 23 N -0.566 5.566 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.123 0.877 27 H 0.165 0.835 28 H 0.430 0.570 29 H 0.416 0.584 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.070 0.930 34 H -0.007 1.007 35 H -0.007 1.007 36 H 0.263 0.737 37 H 0.136 0.864 38 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.369 -16.865 -9.296 27.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.225 6.225 3 C 0.145 3.855 4 C -0.247 4.247 5 C 0.136 3.864 6 N -0.315 5.315 7 C 0.401 3.599 8 O -0.488 6.488 9 N -0.373 5.373 10 C 0.024 3.976 11 C -0.139 4.139 12 C -0.015 4.015 13 C -0.578 4.578 14 H 0.085 0.915 15 C -0.202 4.202 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.199 1.199 19 H -0.212 1.212 20 H -0.184 1.184 21 C -0.248 4.248 22 C 0.001 3.999 23 N -0.292 5.292 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.141 0.859 27 H 0.183 0.817 28 H 0.270 0.730 29 H 0.253 0.747 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.012 0.988 35 H 0.011 0.989 36 H 0.071 0.929 37 H 0.154 0.846 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -20.605 -16.335 -8.616 27.670 hybrid contribution 2.081 0.210 -0.158 2.097 sum -18.524 -16.126 -8.775 26.080 Atomic orbital electron populations 1.23062 0.75692 1.04654 1.02323 1.86203 1.24437 1.24053 1.87768 1.19652 0.89079 0.85118 0.91660 1.20718 0.92587 0.97973 1.13386 1.17486 0.82742 0.93143 0.93007 1.42301 1.04511 1.28075 1.56583 1.16026 0.82722 0.81416 0.79727 1.90945 1.64118 1.47049 1.46706 1.45030 1.04900 1.31990 1.55396 1.21179 0.92714 0.87701 0.96036 1.21599 0.91313 0.99802 1.01222 1.18949 0.94654 0.93333 0.94601 1.21688 0.93571 1.11411 1.31099 0.91473 1.26020 1.04162 0.95134 0.94908 1.70110 1.37290 1.15400 1.34679 0.85427 0.79012 0.78844 0.77626 1.19892 1.21189 1.18424 1.22087 0.95082 0.99588 1.08090 1.22606 0.92166 0.94118 0.90993 1.67394 1.41128 0.99015 1.21639 0.92685 0.92279 0.85894 0.81733 0.73037 0.74660 0.92834 0.93072 0.91234 0.91138 0.98815 0.98881 0.92866 0.84587 0.79675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.38 113.37 1.18 1.67 16 2 O -0.32 -6.14 10.47 -89.94 -0.94 -7.08 16 3 C 0.32 7.03 7.48 84.71 0.63 7.66 16 4 C -0.22 -4.34 9.98 22.58 0.23 -4.11 16 5 C 0.24 5.28 6.32 38.45 0.24 5.52 16 6 N -0.67 -12.78 5.35 -316.76 -1.70 -14.47 16 7 C 0.70 18.92 8.33 179.06 1.49 20.41 16 8 O -0.61 -21.91 14.04 -3.95 -0.06 -21.96 16 9 N -0.72 -17.57 5.56 -478.55 -2.66 -20.23 16 10 C 0.15 4.84 5.67 86.38 0.49 5.33 16 11 C -0.10 -3.65 5.27 30.60 0.16 -3.49 16 12 C 0.02 1.13 4.97 29.85 0.15 1.27 16 13 C -0.54 -29.40 9.11 25.60 0.23 -29.17 16 14 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 15 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 16 N -0.93 -56.39 13.29 21.45 0.28 -56.11 16 17 Si 0.97 43.16 29.54 68.60 2.03 45.19 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 21 C -0.23 -5.38 8.73 22.48 0.20 -5.19 16 22 C 0.16 3.26 11.17 84.55 0.94 4.21 16 23 N -0.57 -12.64 9.21 -309.17 -2.85 -15.49 16 24 H 0.05 0.77 8.10 -2.39 -0.02 0.75 16 25 H 0.06 0.78 8.10 -2.39 -0.02 0.76 16 26 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 28 H 0.43 4.71 8.84 -92.71 -0.82 3.89 16 29 H 0.42 7.05 8.49 -92.71 -0.79 6.26 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 34 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 35 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 36 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 37 H 0.14 3.69 6.48 -2.91 -0.02 3.67 16 38 H 0.19 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -72.80 330.84 0.00 -72.80 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -0.52 Total: 13.04 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 6.41 Total: 4.31 kcal Atomic # 7 Polarization: -99.39 SS G_CDS: -6.92 Total: -106.31 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -1.00 Total: -29.04 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -72.80 0.00 -72.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287491381.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.618 kcal (2) G-P(sol) polarization free energy of solvation -72.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds