Wall clock time and date at job start Tue Mar 31 2020 00:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46987 * 2 1 4 4 C 1.46500 * 119.99983 * 270.00223 * 3 2 1 5 5 C 1.50701 * 109.47036 * 269.99879 * 4 3 2 6 6 H 1.07999 * 119.99827 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00000 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99864 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99948 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47065 * 60.00117 * 9 7 5 11 11 H 1.48501 * 109.46778 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46903 * 299.99687 * 9 7 5 13 13 C 1.34772 * 120.00154 * 89.99727 * 3 2 1 14 14 O 1.21574 * 120.00232 * 179.97438 * 13 3 2 15 15 N 1.34784 * 119.99675 * 0.02562 * 13 3 2 16 16 C 1.39555 * 119.99552 * 185.28014 * 15 13 3 17 17 C 1.39568 * 120.83335 * 32.69212 * 16 15 13 18 18 C 1.37799 * 119.20418 * 180.29747 * 17 16 15 19 19 N 1.32060 * 120.90291 * 359.69749 * 18 17 16 20 20 C 1.32346 * 121.81797 * 0.03164 * 19 18 17 21 21 O 1.35682 * 119.64653 * 179.97438 * 20 19 18 22 22 C 1.42901 * 117.00336 * 0.02562 * 21 20 19 23 23 C 1.38657 * 120.70609 * 359.97438 * 20 19 18 24 24 H 1.09002 * 109.47258 * 299.99461 * 1 2 3 25 25 H 1.08999 * 109.47178 * 60.00292 * 1 2 3 26 26 H 1.09004 * 109.46613 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47258 * 240.00539 * 2 1 3 28 28 H 1.08991 * 109.47368 * 120.00003 * 2 1 3 29 29 H 1.09003 * 109.47151 * 29.99750 * 4 3 2 30 30 H 1.08998 * 109.47105 * 149.99673 * 4 3 2 31 31 H 0.96996 * 119.99673 * 179.97438 * 8 7 5 32 32 H 0.96998 * 120.00140 * 5.27440 * 15 13 3 33 33 H 1.08005 * 120.39411 * 0.02562 * 17 16 15 34 34 H 1.07998 * 119.54820 * 179.72226 * 18 17 16 35 35 H 1.08999 * 109.46835 * 299.99876 * 22 21 20 36 36 H 1.08999 * 109.47384 * 59.99670 * 22 21 20 37 37 H 1.09002 * 109.47410 * 179.97438 * 22 21 20 38 38 H 1.07997 * 120.48668 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2304 -1.0962 7 6 4.1490 2.3898 -2.8780 8 7 3.3486 3.1250 -3.6186 9 14 5.9134 2.0969 -3.4169 10 1 6.1417 0.6403 -3.5936 11 1 6.1608 2.7969 -4.7030 12 1 6.8405 2.6214 -2.3822 13 6 2.2429 2.0166 1.1671 14 8 2.6486 3.1627 1.1672 15 7 2.0187 1.3811 2.3344 16 6 2.1449 2.0719 3.5404 17 6 1.8310 3.4292 3.6235 18 6 1.9738 4.0797 4.8299 19 7 2.3960 3.4350 5.9023 20 6 2.6992 2.1472 5.8679 21 8 3.1295 1.5286 6.9962 22 6 3.2292 2.3280 8.1766 23 6 2.5816 1.4233 4.6912 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.5816 1.6877 -2.0284 30 1 2.0954 3.1411 -1.1384 31 1 3.6747 3.5155 -4.4445 32 1 1.7696 0.4436 2.3361 33 1 1.4845 3.9644 2.7517 34 1 1.7367 5.1311 4.8994 35 1 3.9306 3.1443 8.0044 36 1 2.2491 2.7368 8.4224 37 1 3.5834 1.7124 9.0035 38 1 2.8303 0.3726 4.6671 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287722435.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:52 Heat of formation + Delta-G solvation = -19.445160 kcal Electronic energy + Delta-G solvation = -21555.643544 eV Core-core repulsion = 18206.330175 eV Total energy + Delta-G solvation = -3349.313369 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.81266 -39.66688 -37.77937 -35.63408 -34.83709 -32.79814 -30.91657 -30.38451 -30.15675 -27.39484 -26.89304 -23.63355 -23.44755 -23.13889 -21.96283 -19.67180 -18.67792 -17.53387 -16.73828 -16.46248 -16.00406 -15.87817 -15.79533 -15.00152 -14.67397 -14.30131 -14.11406 -13.76030 -13.64077 -13.35824 -13.13886 -12.61937 -12.26086 -12.11891 -11.86007 -11.74235 -11.29066 -11.24000 -11.00827 -10.88520 -10.64234 -10.58232 -10.17720 -9.81412 -9.68603 -9.30926 -8.59443 -8.46270 -8.33184 -7.76329 -6.07814 -4.12706 1.24976 1.42922 2.78740 3.30240 3.31270 3.35101 3.39209 3.62560 4.01094 4.25390 4.42494 4.44428 5.04554 5.14175 5.17235 5.23308 5.24781 5.26724 5.31571 5.49010 5.50580 5.59629 5.63016 5.88674 5.94145 6.11277 6.19399 6.30304 6.38616 6.71549 6.87492 7.26313 7.27524 7.41038 7.55942 7.89145 7.97461 8.18050 8.43805 8.86748 9.09639 9.52680 11.00112 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021756 B = 0.004084 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.693970 B = 6853.894592 C = 7356.221041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 N -0.603 5.603 4 C 0.261 3.739 5 C -0.530 4.530 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.698 3.302 14 O -0.561 6.561 15 N -0.689 5.689 16 C 0.261 3.739 17 C -0.209 4.209 18 C 0.152 3.848 19 N -0.561 5.561 20 C 0.334 3.666 21 O -0.311 6.311 22 C 0.043 3.957 23 C -0.234 4.234 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.036 0.964 30 H 0.046 0.954 31 H 0.264 0.736 32 H 0.405 0.595 33 H 0.152 0.848 34 H 0.161 0.839 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.092 0.908 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.817 -5.568 16.586 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 N -0.337 5.337 4 C 0.142 3.858 5 C -0.569 4.569 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.400 3.600 14 O -0.436 6.436 15 N -0.339 5.339 16 C 0.155 3.845 17 C -0.232 4.232 18 C -0.002 4.002 19 N -0.287 5.287 20 C 0.155 3.845 21 O -0.219 6.219 22 C -0.053 4.053 23 C -0.258 4.258 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.107 0.893 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.243 0.757 33 H 0.169 0.831 34 H 0.178 0.822 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.375 -4.462 17.056 18.432 hybrid contribution 0.832 -0.940 -1.081 1.657 sum -4.543 -5.402 15.975 17.465 Atomic orbital electron populations 1.22247 0.96470 1.01608 1.02612 1.21408 0.93728 0.84180 1.02569 1.47666 1.66507 1.13420 1.06151 1.19263 0.96321 0.93501 0.76743 1.21410 0.96964 1.32172 1.06335 0.92523 1.24916 0.97874 0.94849 0.96325 1.69914 1.35735 1.33311 1.14358 0.86553 0.84757 0.78250 0.77837 1.20252 1.21135 1.20185 1.15910 0.79163 0.84970 0.79972 1.90924 1.50781 1.16549 1.85385 1.42995 1.72792 1.14475 1.03600 1.17428 0.90811 0.91817 0.84489 1.22108 1.06176 0.94523 1.00423 1.22201 0.92177 0.99316 0.86494 1.67299 1.19877 1.08379 1.33154 1.19335 0.91211 0.87918 0.86081 1.86199 1.80837 1.37903 1.16912 1.22798 1.02237 0.95901 0.84314 1.20536 1.11918 1.02326 0.91003 0.93055 0.91701 0.91980 0.89311 0.92449 0.94611 0.93644 0.92599 0.75686 0.83054 0.82210 0.92361 0.92430 0.88977 0.84266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 37.16 0.38 -1.75 16 2 C 0.11 1.57 5.94 -4.04 -0.02 1.55 16 3 N -0.60 -12.22 2.46 -180.80 -0.44 -12.66 16 4 C 0.26 6.58 5.16 -5.19 -0.03 6.56 16 5 C -0.53 -14.75 9.39 -34.44 -0.32 -15.08 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 9 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.70 14.31 8.04 -86.92 -0.70 13.61 16 14 O -0.56 -13.83 13.62 5.30 0.07 -13.76 16 15 N -0.69 -10.85 5.23 -14.09 -0.07 -10.93 16 16 C 0.26 4.08 6.32 -83.52 -0.53 3.55 16 17 C -0.21 -3.32 8.73 -39.25 -0.34 -3.66 16 18 C 0.15 2.12 11.17 -17.61 -0.20 1.92 16 19 N -0.56 -8.10 9.21 -13.41 -0.12 -8.22 16 20 C 0.33 4.80 7.48 -17.18 -0.13 4.67 16 21 O -0.31 -4.02 10.47 -18.75 -0.20 -4.21 16 22 C 0.04 0.41 10.38 101.05 1.05 1.46 16 23 C -0.23 -3.28 9.98 -39.10 -0.39 -3.68 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 28 H 0.06 0.69 6.29 -51.93 -0.33 0.37 16 29 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 30 H 0.05 1.30 7.42 -51.93 -0.39 0.91 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.41 5.03 6.51 -40.82 -0.27 4.77 16 33 H 0.15 2.64 6.48 -52.48 -0.34 2.30 16 34 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 36 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 327.29 15.07 4.93 4.93 Total: -1.00 -33.23 327.29 -6.52 -39.75 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -5.08 Total: 2.98 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: -1.33 Total: 10.83 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: 0.10 Total: -57.22 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.12 Total: -17.97 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.23 -6.52 -39.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287722435.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.305 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds