Wall clock time and date at job start Tue Mar 31 2020 00:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46987 * 2 1 4 4 C 1.46500 * 119.99983 * 270.00223 * 3 2 1 5 5 C 1.50701 * 109.47036 * 269.99879 * 4 3 2 6 6 H 1.07999 * 119.99827 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00000 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99864 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99948 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47065 * 60.00117 * 9 7 5 11 11 H 1.48501 * 109.46778 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46903 * 299.99687 * 9 7 5 13 13 C 1.34772 * 120.00154 * 89.99727 * 3 2 1 14 14 O 1.21574 * 120.00232 * 179.97438 * 13 3 2 15 15 N 1.34784 * 119.99675 * 0.02562 * 13 3 2 16 16 C 1.39555 * 119.99552 * 185.28014 * 15 13 3 17 17 C 1.39568 * 120.83335 * 32.69212 * 16 15 13 18 18 C 1.37799 * 119.20418 * 180.29747 * 17 16 15 19 19 N 1.32060 * 120.90291 * 359.69749 * 18 17 16 20 20 C 1.32346 * 121.81797 * 0.03164 * 19 18 17 21 21 O 1.35682 * 119.64653 * 179.97438 * 20 19 18 22 22 C 1.42901 * 117.00336 * 0.02562 * 21 20 19 23 23 C 1.38657 * 120.70609 * 359.97438 * 20 19 18 24 24 H 1.09002 * 109.47258 * 299.99461 * 1 2 3 25 25 H 1.08999 * 109.47178 * 60.00292 * 1 2 3 26 26 H 1.09004 * 109.46613 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47258 * 240.00539 * 2 1 3 28 28 H 1.08991 * 109.47368 * 120.00003 * 2 1 3 29 29 H 1.09003 * 109.47151 * 29.99750 * 4 3 2 30 30 H 1.08998 * 109.47105 * 149.99673 * 4 3 2 31 31 H 0.96996 * 119.99673 * 179.97438 * 8 7 5 32 32 H 0.96998 * 120.00140 * 5.27440 * 15 13 3 33 33 H 1.08005 * 120.39411 * 0.02562 * 17 16 15 34 34 H 1.07998 * 119.54820 * 179.72226 * 18 17 16 35 35 H 1.08999 * 109.46835 * 299.99876 * 22 21 20 36 36 H 1.08999 * 109.47384 * 59.99670 * 22 21 20 37 37 H 1.09002 * 109.47410 * 179.97438 * 22 21 20 38 38 H 1.07997 * 120.48668 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2304 -1.0962 7 6 4.1490 2.3898 -2.8780 8 7 3.3486 3.1250 -3.6186 9 14 5.9134 2.0969 -3.4169 10 1 6.1417 0.6403 -3.5936 11 1 6.1608 2.7969 -4.7030 12 1 6.8405 2.6214 -2.3822 13 6 2.2429 2.0166 1.1671 14 8 2.6486 3.1627 1.1672 15 7 2.0187 1.3811 2.3344 16 6 2.1449 2.0719 3.5404 17 6 1.8310 3.4292 3.6235 18 6 1.9738 4.0797 4.8299 19 7 2.3960 3.4350 5.9023 20 6 2.6992 2.1472 5.8679 21 8 3.1295 1.5286 6.9962 22 6 3.2292 2.3280 8.1766 23 6 2.5816 1.4233 4.6912 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.5816 1.6877 -2.0284 30 1 2.0954 3.1411 -1.1384 31 1 3.6747 3.5155 -4.4445 32 1 1.7696 0.4436 2.3361 33 1 1.4845 3.9644 2.7517 34 1 1.7367 5.1311 4.8994 35 1 3.9306 3.1443 8.0044 36 1 2.2491 2.7368 8.4224 37 1 3.5834 1.7124 9.0035 38 1 2.8303 0.3726 4.6671 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287722435.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:52 Heat of formation + Delta-G solvation = -43.196661 kcal Electronic energy + Delta-G solvation = -21556.673487 eV Core-core repulsion = 18206.330175 eV Total energy + Delta-G solvation = -3350.343311 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.08149 -40.99946 -38.88422 -37.16432 -36.28754 -34.83061 -32.11345 -31.66163 -31.50045 -28.97237 -28.05392 -25.36892 -24.59836 -24.45926 -23.32987 -21.11492 -19.89685 -18.98920 -18.52744 -17.87910 -17.27877 -17.10311 -16.91239 -16.54418 -16.30136 -15.82122 -15.31980 -14.99183 -14.82597 -14.62935 -14.43625 -14.27009 -13.70152 -13.31644 -13.29094 -13.09455 -12.70937 -12.69507 -12.52790 -12.28217 -12.19781 -11.98429 -11.92040 -11.71958 -11.22826 -10.66458 -10.63058 -9.89162 -9.53332 -9.37131 -8.21681 -6.35981 0.10972 0.24414 1.37150 1.41188 1.45581 1.50989 2.10167 2.21657 2.39617 2.81762 2.91579 3.08678 3.40098 3.91707 4.03754 4.12011 4.14684 4.35054 4.49542 4.49690 4.50504 4.55218 4.73521 4.82655 4.85431 4.94859 4.99224 5.11238 5.12387 5.22279 5.35657 5.54941 5.62144 5.75712 5.99332 6.06137 6.24305 6.72279 6.85392 6.94736 7.30189 7.53147 8.84874 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021756 B = 0.004084 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.693970 B = 6853.894592 C = 7356.221041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 N -0.608 5.608 4 C 0.279 3.721 5 C -0.545 4.545 6 H 0.052 0.948 7 C 0.011 3.989 8 N -0.926 5.926 9 Si 0.964 3.036 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.281 1.281 13 C 0.696 3.304 14 O -0.612 6.612 15 N -0.669 5.669 16 C 0.243 3.757 17 C -0.228 4.228 18 C 0.158 3.842 19 N -0.563 5.563 20 C 0.327 3.673 21 O -0.316 6.316 22 C 0.037 3.963 23 C -0.226 4.226 24 H 0.054 0.946 25 H 0.043 0.957 26 H 0.098 0.902 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.030 0.970 30 H 0.001 0.999 31 H 0.267 0.733 32 H 0.423 0.577 33 H 0.129 0.871 34 H 0.187 0.813 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.124 0.876 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.299 -7.496 18.275 20.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.025 4.025 3 N -0.342 5.342 4 C 0.157 3.843 5 C -0.584 4.584 6 H 0.070 0.930 7 C -0.188 4.188 8 N -0.566 5.566 9 Si 0.789 3.211 10 H -0.185 1.185 11 H -0.203 1.203 12 H -0.207 1.207 13 C 0.398 3.602 14 O -0.491 6.491 15 N -0.320 5.320 16 C 0.138 3.862 17 C -0.251 4.251 18 C 0.004 3.996 19 N -0.290 5.290 20 C 0.148 3.852 21 O -0.223 6.223 22 C -0.058 4.058 23 C -0.250 4.250 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.117 0.883 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.048 0.952 30 H 0.020 0.980 31 H 0.076 0.924 32 H 0.264 0.736 33 H 0.147 0.853 34 H 0.204 0.796 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.142 0.858 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.886 -6.468 18.799 20.473 hybrid contribution 0.638 -0.331 -1.470 1.636 sum -4.249 -6.799 17.329 19.094 Atomic orbital electron populations 1.22170 0.94341 1.03705 1.01776 1.21760 0.95452 0.81218 1.04026 1.47521 1.66743 1.15299 1.04624 1.18685 0.95251 0.91505 0.78838 1.21699 0.98020 1.32152 1.06514 0.92984 1.25791 1.02140 0.94492 0.96420 1.70029 1.37679 1.34086 1.14786 0.85518 0.79270 0.79020 0.77297 1.18456 1.20325 1.20668 1.16030 0.78723 0.84453 0.80974 1.90887 1.52971 1.18888 1.86314 1.42560 1.72163 1.15001 1.02235 1.17593 0.91934 0.91987 0.84731 1.22067 1.07503 0.95034 1.00509 1.22564 0.91064 1.00401 0.85601 1.67389 1.19840 1.08675 1.33059 1.19582 0.90858 0.87958 0.86829 1.86201 1.80376 1.38467 1.17248 1.23073 1.02473 0.96389 0.83822 1.20681 1.10825 1.03358 0.90125 0.92661 0.93796 0.88310 0.89959 0.88871 0.95173 0.98045 0.92368 0.73611 0.85313 0.79572 0.92782 0.92188 0.85780 0.81898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 10.24 71.98 0.74 -3.01 16 2 C 0.10 2.78 5.94 86.38 0.51 3.30 16 3 N -0.61 -25.01 2.46 -844.20 -2.07 -27.08 16 4 C 0.28 14.66 5.16 85.63 0.44 15.10 16 5 C -0.55 -31.00 9.39 25.60 0.24 -30.76 16 6 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 7 C 0.01 0.62 5.46 84.66 0.46 1.08 16 8 N -0.93 -55.33 13.29 21.45 0.28 -55.04 16 9 Si 0.96 44.68 29.54 68.60 2.03 46.70 16 10 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 13 C 0.70 29.05 8.04 179.05 1.44 30.49 16 14 O -0.61 -31.51 13.62 -3.95 -0.05 -31.56 16 15 N -0.67 -20.49 5.23 -316.75 -1.66 -22.15 16 16 C 0.24 7.42 6.32 38.45 0.24 7.66 16 17 C -0.23 -7.31 8.73 22.49 0.20 -7.11 16 18 C 0.16 4.28 11.17 84.55 0.94 5.23 16 19 N -0.56 -15.43 9.21 -309.17 -2.85 -18.28 16 20 C 0.33 8.79 7.48 84.72 0.63 9.42 16 21 O -0.32 -7.37 10.47 -90.00 -0.94 -8.32 16 22 C 0.04 0.61 10.38 113.37 1.18 1.79 16 23 C -0.23 -5.92 9.98 22.58 0.23 -5.69 16 24 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.08 2.47 8.07 -2.39 -0.02 2.46 16 28 H 0.09 1.97 6.29 -2.39 -0.02 1.96 16 29 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 30 H 0.00 0.09 7.42 -2.39 -0.02 0.07 16 31 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 32 H 0.42 9.53 6.51 -92.71 -0.60 8.93 16 33 H 0.13 4.75 6.48 -2.91 -0.02 4.73 16 34 H 0.19 3.85 8.06 -2.91 -0.02 3.82 16 35 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 36 H 0.06 0.97 8.10 -2.39 -0.02 0.95 16 37 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.16 3.39 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -74.28 327.29 2.46 -71.82 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.47 Total: 16.41 kcal Atomic # 6 Polarization: 20.25 SS G_CDS: 7.25 Total: 27.50 kcal Atomic # 7 Polarization: -116.26 SS G_CDS: -6.29 Total: -122.55 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -1.00 Total: -39.88 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -74.28 2.46 -71.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287722435.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.621 kcal (2) G-P(sol) polarization free energy of solvation -74.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds