Wall clock time and date at job start Tue Mar 31 2020 01:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 120.00062 * 2 1 4 4 N 1.46908 * 109.46830 * 123.00472 * 3 2 1 5 5 C 1.46904 * 110.99602 * 63.22712 * 4 3 2 6 6 C 1.50705 * 109.47026 * 66.04621 * 5 4 3 7 7 H 1.07997 * 119.99699 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99666 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00101 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99657 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47124 * 90.00298 * 10 8 6 12 12 H 1.48500 * 109.46656 * 210.00030 * 10 8 6 13 13 H 1.48498 * 109.47079 * 329.99884 * 10 8 6 14 14 C 1.46896 * 111.00174 * 299.27289 * 4 3 2 15 15 C 1.50694 * 109.47177 * 288.00980 * 14 4 3 16 16 C 1.38264 * 119.93812 * 272.45397 * 15 14 4 17 17 C 1.38174 * 120.09794 * 180.02562 * 16 15 14 18 18 C 1.38665 * 119.96867 * 359.97438 * 17 16 15 19 19 O 1.35959 * 120.06203 * 180.27558 * 18 17 16 20 20 C 1.42902 * 117.00042 * 359.72654 * 19 18 17 21 21 C 1.38907 * 119.87291 * 0.02562 * 18 17 16 22 22 F 1.35103 * 120.04548 * 180.02562 * 21 18 17 23 23 C 1.38257 * 119.93857 * 92.42919 * 15 14 4 24 24 H 1.08005 * 119.99826 * 359.97438 * 1 2 3 25 25 H 1.07999 * 119.99854 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.00135 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47096 * 3.00872 * 3 2 1 28 28 H 1.08996 * 109.47338 * 243.00754 * 3 2 1 29 29 H 1.09003 * 109.46802 * 186.04352 * 5 4 3 30 30 H 1.08993 * 109.47044 * 306.04212 * 5 4 3 31 31 H 0.97006 * 119.99997 * 179.97438 * 9 8 6 32 32 H 1.09003 * 109.46755 * 168.00925 * 14 4 3 33 33 H 1.09004 * 109.47344 * 48.00824 * 14 4 3 34 34 H 1.08000 * 119.94998 * 0.02562 * 16 15 14 35 35 H 1.08000 * 120.01750 * 180.02562 * 17 16 15 36 36 H 1.09001 * 109.47001 * 299.99926 * 20 19 18 37 37 H 1.08998 * 109.47055 * 59.99861 * 20 19 18 38 38 H 1.08997 * 109.47471 * 180.02562 * 20 19 18 39 39 H 1.07999 * 119.98493 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9617 1.3519 1.1616 5 6 3.9787 0.2947 1.0834 6 6 4.8910 0.5607 -0.0862 7 1 4.7310 1.4281 -0.7094 8 6 5.9299 -0.3033 -0.3606 9 7 6.1249 -1.3592 0.3986 10 14 7.0611 0.0269 -1.8100 11 1 8.2037 0.8645 -1.3654 12 1 7.5703 -1.2618 -2.3439 13 1 6.3084 0.7402 -2.8730 14 6 2.2041 1.2619 2.4169 15 6 1.4609 2.5522 2.6487 16 6 2.0806 3.5962 3.3101 17 6 1.4021 4.7806 3.5249 18 6 0.0978 4.9228 3.0761 19 8 -0.5698 6.0893 3.2814 20 6 0.1315 7.1252 3.9722 21 6 -0.5236 3.8731 2.4117 22 9 -1.7941 4.0080 1.9725 23 6 0.1607 2.6899 2.1990 24 1 -0.5400 0.9354 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3564 2.1329 0.0539 28 1 2.6491 1.3866 -0.9157 29 1 4.5622 0.2832 2.0041 30 1 3.4900 -0.6704 0.9509 31 1 6.8556 -1.9672 0.2053 32 1 2.8915 1.0848 3.2441 33 1 1.4922 0.4389 2.3534 34 1 3.0966 3.4859 3.6594 35 1 1.8875 5.5954 4.0414 36 1 0.4166 6.7724 4.9634 37 1 1.0264 7.3947 3.4112 38 1 -0.5135 7.9984 4.0694 39 1 -0.3212 1.8729 1.6826 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292328456.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:26 Heat of formation + Delta-G solvation = -29.909417 kcal Electronic energy + Delta-G solvation = -21606.653916 eV Core-core repulsion = 18236.966822 eV Total energy + Delta-G solvation = -3369.687095 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.66553 -40.04689 -38.31675 -36.59782 -32.99520 -32.34544 -30.74087 -30.50457 -27.91192 -26.87922 -25.93040 -23.76059 -22.68810 -21.55797 -20.75787 -18.98410 -18.18163 -16.90163 -16.69825 -16.21187 -16.14207 -15.16730 -14.98560 -14.86446 -14.78861 -14.48110 -14.15185 -13.91945 -13.69000 -13.13224 -12.68327 -12.40063 -12.25980 -12.09780 -11.58132 -11.36587 -11.27187 -11.10703 -10.95817 -10.86586 -10.75956 -10.62149 -10.43774 -9.88970 -9.33069 -8.89989 -8.83250 -8.46730 -8.03318 -7.28768 -6.05724 -4.06798 1.23116 1.33199 2.69707 3.07691 3.30573 3.36910 3.40361 3.64363 4.28377 4.41322 4.70924 4.81845 4.96886 5.00486 5.17590 5.20357 5.28418 5.31006 5.37117 5.44393 5.54969 5.68111 5.82568 5.98166 6.02441 6.15200 6.21926 6.26264 6.39919 6.59885 6.70687 6.74852 7.03626 7.07846 7.26290 7.31591 7.33047 7.76529 8.03120 8.13513 8.49089 9.00525 9.57535 11.04941 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022591 B = 0.004238 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.107640 B = 6606.035630 C = 7243.085034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.157 4.157 3 C 0.082 3.918 4 N -0.522 5.522 5 C 0.189 3.811 6 C -0.506 4.506 7 H 0.063 0.937 8 C 0.057 3.943 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.087 3.913 15 C -0.064 4.064 16 C -0.068 4.068 17 C -0.182 4.182 18 C 0.083 3.917 19 O -0.315 6.315 20 C 0.028 3.972 21 C 0.064 3.936 22 F -0.138 7.138 23 C -0.116 4.116 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.113 0.887 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.030 0.970 30 H -0.001 1.001 31 H 0.261 0.739 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.099 0.901 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.335 11.039 6.947 17.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.177 4.177 3 C -0.046 4.046 4 N -0.245 5.245 5 C 0.065 3.935 6 C -0.545 4.545 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.041 4.041 15 C -0.065 4.065 16 C -0.087 4.087 17 C -0.201 4.201 18 C 0.037 3.963 19 O -0.228 6.228 20 C -0.067 4.067 21 C 0.045 3.955 22 F -0.117 7.117 23 C -0.135 4.135 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.131 0.869 27 H 0.079 0.921 28 H 0.110 0.890 29 H 0.048 0.952 30 H 0.016 0.984 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.174 11.399 6.897 17.389 hybrid contribution 0.293 -0.631 -0.736 1.013 sum -10.881 10.769 6.161 16.502 Atomic orbital electron populations 1.23730 0.96003 1.00852 1.04966 1.23922 0.96169 1.01585 0.96035 1.21351 0.94471 0.92420 0.96332 1.62430 1.12606 1.50563 0.98865 1.19810 0.88511 0.87220 0.97977 1.21137 1.12033 1.09168 1.12136 0.91875 1.24958 0.97629 0.95066 0.96813 1.69949 1.31352 1.13685 1.38837 0.86524 0.80974 0.77463 0.82623 1.20655 1.21361 1.19853 1.21041 0.96172 0.91747 0.95117 1.19762 0.92615 0.97166 0.97003 1.20954 0.99712 0.91411 0.96640 1.21102 0.93279 1.00135 1.05567 1.18943 0.92101 0.86277 0.98993 1.86101 1.41500 1.21416 1.73824 1.23063 0.98206 0.89360 0.96098 1.16918 0.80784 0.94231 1.03600 1.91469 1.36100 1.96270 1.87826 1.21099 0.95251 0.96039 1.01094 0.89176 0.89278 0.86896 0.92117 0.88971 0.95211 0.98354 0.92929 0.90196 0.94006 0.84746 0.84783 0.92588 0.92451 0.88297 0.84104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.23 13.43 29.02 0.39 -2.84 16 2 C -0.16 -2.76 7.43 -36.02 -0.27 -3.03 16 3 C 0.08 1.55 5.39 -4.97 -0.03 1.52 16 4 N -0.52 -10.58 4.65 -238.95 -1.11 -11.69 16 5 C 0.19 4.65 4.55 -4.97 -0.02 4.62 16 6 C -0.51 -13.65 8.47 -34.44 -0.29 -13.94 16 7 H 0.06 1.70 7.12 -52.49 -0.37 1.33 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -25.94 13.29 55.43 0.74 -25.21 16 10 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 14 C 0.09 1.49 4.97 -4.98 -0.02 1.46 16 15 C -0.06 -0.98 4.99 -104.61 -0.52 -1.50 16 16 C -0.07 -0.94 9.70 -39.60 -0.38 -1.32 16 17 C -0.18 -2.25 9.04 -39.45 -0.36 -2.61 16 18 C 0.08 1.15 6.69 -39.18 -0.26 0.89 16 19 O -0.31 -4.07 10.36 -19.61 -0.20 -4.27 16 20 C 0.03 0.22 9.81 101.05 0.99 1.22 16 21 C 0.06 0.97 7.31 -39.30 -0.29 0.68 16 22 F -0.14 -2.16 17.11 2.25 0.04 -2.12 16 23 C -0.12 -1.71 8.24 -39.54 -0.33 -2.03 16 24 H 0.09 1.25 6.54 -52.48 -0.34 0.90 16 25 H 0.09 1.20 8.06 -52.49 -0.42 0.78 16 26 H 0.11 2.21 6.81 -52.49 -0.36 1.85 16 27 H 0.06 1.06 6.08 -51.93 -0.32 0.74 16 28 H 0.09 1.91 6.77 -51.93 -0.35 1.56 16 29 H 0.03 0.78 7.86 -51.93 -0.41 0.37 16 30 H 0.00 -0.03 6.31 -51.93 -0.33 -0.36 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.08 1.34 7.77 -51.93 -0.40 0.93 16 33 H 0.04 0.71 6.66 -51.93 -0.35 0.36 16 34 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.13 1.28 6.30 -52.49 -0.33 0.94 16 36 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 37 H 0.06 0.42 7.65 -51.93 -0.40 0.02 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.14 2.00 5.69 -52.49 -0.30 1.70 16 LS Contribution 323.55 15.07 4.88 4.88 Total: -1.00 -29.56 323.55 -7.23 -36.79 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.06 Total: 0.84 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -1.49 Total: -15.42 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: -0.37 Total: -36.90 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.20 Total: -4.27 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.56 -7.23 -36.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292328456.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.877 kcal (2) G-P(sol) polarization free energy of solvation -29.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds