Wall clock time and date at job start Tue Mar 31 2020 01:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 120.00062 * 2 1 4 4 N 1.46908 * 109.46830 * 123.00472 * 3 2 1 5 5 C 1.46904 * 110.99602 * 63.22712 * 4 3 2 6 6 C 1.50705 * 109.47026 * 66.04621 * 5 4 3 7 7 H 1.07997 * 119.99699 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99666 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00101 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99657 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47124 * 90.00298 * 10 8 6 12 12 H 1.48500 * 109.46656 * 210.00030 * 10 8 6 13 13 H 1.48498 * 109.47079 * 329.99884 * 10 8 6 14 14 C 1.46896 * 111.00174 * 299.27289 * 4 3 2 15 15 C 1.50694 * 109.47177 * 288.00980 * 14 4 3 16 16 C 1.38264 * 119.93812 * 272.45397 * 15 14 4 17 17 C 1.38174 * 120.09794 * 180.02562 * 16 15 14 18 18 C 1.38665 * 119.96867 * 359.97438 * 17 16 15 19 19 O 1.35959 * 120.06203 * 180.27558 * 18 17 16 20 20 C 1.42902 * 117.00042 * 359.72654 * 19 18 17 21 21 C 1.38907 * 119.87291 * 0.02562 * 18 17 16 22 22 F 1.35103 * 120.04548 * 180.02562 * 21 18 17 23 23 C 1.38257 * 119.93857 * 92.42919 * 15 14 4 24 24 H 1.08005 * 119.99826 * 359.97438 * 1 2 3 25 25 H 1.07999 * 119.99854 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.00135 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47096 * 3.00872 * 3 2 1 28 28 H 1.08996 * 109.47338 * 243.00754 * 3 2 1 29 29 H 1.09003 * 109.46802 * 186.04352 * 5 4 3 30 30 H 1.08993 * 109.47044 * 306.04212 * 5 4 3 31 31 H 0.97006 * 119.99997 * 179.97438 * 9 8 6 32 32 H 1.09003 * 109.46755 * 168.00925 * 14 4 3 33 33 H 1.09004 * 109.47344 * 48.00824 * 14 4 3 34 34 H 1.08000 * 119.94998 * 0.02562 * 16 15 14 35 35 H 1.08000 * 120.01750 * 180.02562 * 17 16 15 36 36 H 1.09001 * 109.47001 * 299.99926 * 20 19 18 37 37 H 1.08998 * 109.47055 * 59.99861 * 20 19 18 38 38 H 1.08997 * 109.47471 * 180.02562 * 20 19 18 39 39 H 1.07999 * 119.98493 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9617 1.3519 1.1616 5 6 3.9787 0.2947 1.0834 6 6 4.8910 0.5607 -0.0862 7 1 4.7310 1.4281 -0.7094 8 6 5.9299 -0.3033 -0.3606 9 7 6.1249 -1.3592 0.3986 10 14 7.0611 0.0269 -1.8100 11 1 8.2037 0.8645 -1.3654 12 1 7.5703 -1.2618 -2.3439 13 1 6.3084 0.7402 -2.8730 14 6 2.2041 1.2619 2.4169 15 6 1.4609 2.5522 2.6487 16 6 2.0806 3.5962 3.3101 17 6 1.4021 4.7806 3.5249 18 6 0.0978 4.9228 3.0761 19 8 -0.5698 6.0893 3.2814 20 6 0.1315 7.1252 3.9722 21 6 -0.5236 3.8731 2.4117 22 9 -1.7941 4.0080 1.9725 23 6 0.1607 2.6899 2.1990 24 1 -0.5400 0.9354 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3564 2.1329 0.0539 28 1 2.6491 1.3866 -0.9157 29 1 4.5622 0.2832 2.0041 30 1 3.4900 -0.6704 0.9509 31 1 6.8556 -1.9672 0.2053 32 1 2.8915 1.0848 3.2441 33 1 1.4922 0.4389 2.3534 34 1 3.0966 3.4859 3.6594 35 1 1.8875 5.5954 4.0414 36 1 0.4166 6.7724 4.9634 37 1 1.0264 7.3947 3.4112 38 1 -0.5135 7.9984 4.0694 39 1 -0.3212 1.8729 1.6826 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292328456.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:26 Heat of formation + Delta-G solvation = -47.560521 kcal Electronic energy + Delta-G solvation = -21607.419326 eV Core-core repulsion = 18236.966822 eV Total energy + Delta-G solvation = -3370.452504 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.81643 -41.08120 -39.57500 -37.89059 -34.89917 -33.84512 -31.99444 -31.63945 -29.12352 -28.38042 -27.21258 -25.42164 -23.74232 -23.09759 -22.04191 -20.43206 -19.18417 -18.42888 -17.91026 -17.70926 -17.15571 -16.76364 -16.54684 -16.01956 -15.88413 -15.75103 -15.58259 -15.14798 -14.96870 -14.57997 -14.09394 -13.85410 -13.32918 -13.23251 -13.15437 -12.79249 -12.68880 -12.59555 -12.43552 -12.22780 -12.15947 -12.02424 -11.91189 -11.70894 -11.27141 -10.58823 -10.27414 -9.90919 -9.15143 -8.92016 -8.16638 -6.25088 0.15339 0.22901 1.36847 1.43068 1.43258 1.54235 2.21917 2.41620 2.54610 3.16548 3.20909 3.53045 3.73887 3.83341 4.02801 4.10962 4.23924 4.28796 4.40731 4.42307 4.50985 4.54238 4.61903 4.75029 4.79457 4.92095 4.96590 5.08309 5.09429 5.18220 5.28122 5.37872 5.60283 5.64654 5.67654 5.72895 5.81943 6.11144 6.31391 6.35825 6.65924 6.90580 7.43922 8.93810 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022591 B = 0.004238 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.107640 B = 6606.035630 C = 7243.085034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.187 4.187 3 C 0.089 3.911 4 N -0.528 5.528 5 C 0.206 3.794 6 C -0.518 4.518 7 H 0.060 0.940 8 C 0.006 3.994 9 N -0.933 5.933 10 Si 0.962 3.038 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.267 1.267 14 C 0.093 3.907 15 C -0.079 4.079 16 C -0.070 4.070 17 C -0.172 4.172 18 C 0.085 3.915 19 O -0.333 6.333 20 C 0.016 3.984 21 C 0.044 3.956 22 F -0.145 7.145 23 C -0.114 4.114 24 H 0.107 0.893 25 H 0.108 0.892 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.005 0.995 30 H -0.023 1.023 31 H 0.263 0.737 32 H 0.077 0.923 33 H 0.042 0.958 34 H 0.143 0.857 35 H 0.167 0.833 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.120 0.880 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.036 12.929 7.071 19.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.206 4.206 3 C -0.038 4.038 4 N -0.250 5.250 5 C 0.080 3.920 6 C -0.556 4.556 7 H 0.078 0.922 8 C -0.192 4.192 9 N -0.574 5.574 10 Si 0.787 3.213 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.191 1.191 14 C -0.035 4.035 15 C -0.080 4.080 16 C -0.088 4.088 17 C -0.190 4.190 18 C 0.039 3.961 19 O -0.247 6.247 20 C -0.078 4.078 21 C 0.024 3.976 22 F -0.124 7.124 23 C -0.133 4.133 24 H 0.125 0.875 25 H 0.127 0.873 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.024 0.976 30 H -0.006 1.006 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.161 0.839 35 H 0.184 0.816 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.139 0.861 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.894 13.313 7.027 19.186 hybrid contribution 0.393 -1.122 -0.699 1.379 sum -11.501 12.191 6.329 17.915 Atomic orbital electron populations 1.23946 0.94807 1.02541 1.00378 1.23570 0.97036 0.99742 1.00290 1.21228 0.94183 0.93804 0.94605 1.62315 1.13271 1.48548 1.00867 1.19425 0.89051 0.87551 0.95964 1.21441 1.12506 1.08942 1.12707 0.92204 1.25786 0.99192 0.94814 0.99449 1.70069 1.32117 1.14642 1.40567 0.85494 0.78976 0.77421 0.79413 1.19935 1.21013 1.19131 1.20978 0.95920 0.93233 0.93350 1.19557 0.92884 0.96719 0.98839 1.21128 1.00155 0.91486 0.96054 1.21361 0.92591 1.00349 1.04742 1.19092 0.92428 0.86488 0.98096 1.86094 1.42635 1.21701 1.74267 1.23433 0.99018 0.88786 0.96550 1.17096 0.80773 0.94952 1.04753 1.91443 1.36569 1.96342 1.88057 1.21043 0.95032 0.96196 1.01054 0.87451 0.87350 0.89669 0.90333 0.91557 0.97646 1.00558 0.92829 0.90469 0.93990 0.83927 0.81553 0.91035 0.91408 0.86142 0.83902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.02 13.43 67.78 0.91 -4.11 16 2 C -0.19 -6.62 7.43 25.65 0.19 -6.43 16 3 C 0.09 3.42 5.39 85.56 0.46 3.88 16 4 N -0.53 -21.85 4.65 -909.91 -4.23 -26.08 16 5 C 0.21 10.53 4.55 85.56 0.39 10.92 16 6 C -0.52 -28.63 8.47 25.60 0.22 -28.41 16 7 H 0.06 3.28 7.12 -2.91 -0.02 3.26 16 8 C 0.01 0.31 5.46 84.66 0.46 0.77 16 9 N -0.93 -55.16 13.29 21.45 0.28 -54.88 16 10 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 13 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 14 C 0.09 3.19 4.97 85.56 0.43 3.61 16 15 C -0.08 -2.33 4.99 -19.86 -0.10 -2.43 16 16 C -0.07 -1.79 9.70 22.26 0.22 -1.57 16 17 C -0.17 -3.79 9.04 22.36 0.20 -3.59 16 18 C 0.09 2.19 6.69 22.53 0.15 2.34 16 19 O -0.33 -7.79 10.36 -93.08 -0.96 -8.76 16 20 C 0.02 0.21 9.81 113.37 1.11 1.32 16 21 C 0.04 1.26 7.31 22.45 0.16 1.42 16 22 F -0.15 -4.39 17.11 44.97 0.77 -3.62 16 23 C -0.11 -3.24 8.24 22.30 0.18 -3.05 16 24 H 0.11 2.68 6.54 -2.91 -0.02 2.67 16 25 H 0.11 2.66 8.06 -2.91 -0.02 2.63 16 26 H 0.09 3.51 6.81 -2.91 -0.02 3.49 16 27 H 0.08 2.68 6.08 -2.39 -0.01 2.67 16 28 H 0.07 2.83 6.77 -2.39 -0.02 2.81 16 29 H 0.01 0.30 7.86 -2.39 -0.02 0.28 16 30 H -0.02 -1.28 6.31 -2.39 -0.02 -1.29 16 31 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 32 H 0.08 2.64 7.77 -2.39 -0.02 2.63 16 33 H 0.04 1.43 6.66 -2.38 -0.02 1.42 16 34 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 35 H 0.17 2.51 6.30 -2.91 -0.02 2.49 16 36 H 0.07 0.71 7.67 -2.39 -0.02 0.69 16 37 H 0.07 0.75 7.65 -2.39 -0.02 0.73 16 38 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.14 3.86 5.69 -2.91 -0.02 3.84 16 Total: -1.00 -64.60 323.55 3.93 -60.67 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 1.05 Total: 12.06 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: 4.99 Total: -25.33 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -3.94 Total: -80.96 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.96 Total: -8.76 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.77 Total: -3.62 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -64.60 3.93 -60.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292328456.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.114 kcal (2) G-P(sol) polarization free energy of solvation -64.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds