Wall clock time and date at job start Tue Mar 31 2020 02:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35744 * 116.99755 * 2 1 4 4 C 1.39284 * 120.84561 * 0.02562 * 3 2 1 5 5 C 1.37954 * 119.08995 * 179.97438 * 4 3 2 6 6 N 1.31973 * 120.82461 * 359.73933 * 5 4 3 7 7 C 1.31947 * 121.86370 * 0.53456 * 6 5 4 8 8 C 1.37994 * 120.82167 * 359.46463 * 7 6 5 9 9 C 1.50697 * 120.45838 * 180.23639 * 8 7 6 10 10 N 1.46504 * 109.47110 * 260.00736 * 9 8 7 11 11 C 1.34781 * 119.99591 * 179.97438 * 10 9 8 12 12 O 1.21581 * 120.00305 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99376 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99798 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47167 * 180.02562 * 14 13 11 16 16 C 1.50703 * 109.47040 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00079 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99897 * 180.02562 * 16 15 14 19 19 N 1.31521 * 120.00135 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00111 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47183 * 90.00226 * 20 18 16 22 22 H 1.48500 * 109.47151 * 209.99867 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99782 * 20 18 16 24 24 H 1.08997 * 109.47193 * 60.00413 * 1 2 3 25 25 H 1.09004 * 109.47092 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47294 * 300.00291 * 1 2 3 27 27 H 1.07995 * 120.45814 * 359.95897 * 4 3 2 28 28 H 1.08004 * 119.58569 * 179.97438 * 5 4 3 29 29 H 1.08002 * 119.59362 * 179.75291 * 7 6 5 30 30 H 1.08996 * 109.46937 * 20.00116 * 9 8 7 31 31 H 1.08998 * 109.47563 * 140.00560 * 9 8 7 32 32 H 0.97001 * 120.00318 * 359.97438 * 10 9 8 33 33 H 0.96996 * 120.00695 * 0.02562 * 13 11 10 34 34 H 1.09000 * 109.47303 * 299.99728 * 14 13 11 35 35 H 1.08992 * 109.47418 * 59.99982 * 14 13 11 36 36 H 1.09003 * 109.47322 * 299.99585 * 15 14 13 37 37 H 1.09002 * 109.47358 * 60.00114 * 15 14 13 38 38 H 0.97002 * 120.00361 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 0.0005 5 6 1.9675 3.5981 0.0011 6 7 3.2864 3.6458 0.0062 7 6 4.0230 2.5511 0.0006 8 6 3.4346 1.3029 0.0001 9 6 4.2838 0.0580 -0.0010 10 7 4.3605 -0.4796 -1.3617 11 6 5.0723 -1.5979 -1.6052 12 8 5.6511 -2.1603 -0.6958 13 7 5.1423 -2.0928 -2.8568 14 6 5.9156 -3.3087 -3.1215 15 6 5.8323 -3.6521 -4.6101 16 6 6.6272 -4.9032 -4.8822 17 1 7.1407 -5.4031 -4.0743 18 6 6.6997 -5.4089 -6.1628 19 7 7.3938 -6.5005 -6.4004 20 14 5.8121 -4.5438 -7.5604 21 1 6.7160 -3.5375 -8.1732 22 1 5.4137 -5.5409 -8.5862 23 1 4.6011 -3.8654 -7.0329 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 0.2244 2.3567 0.0003 28 1 1.4006 4.5174 0.0011 29 1 5.0999 2.6329 0.0011 30 1 5.2864 0.3019 0.3502 31 1 3.8385 -0.6862 0.6592 32 1 3.8990 -0.0308 -2.0873 33 1 4.6809 -1.6440 -3.5824 34 1 6.9569 -3.1446 -2.8446 35 1 5.5092 -4.1326 -2.5350 36 1 4.7911 -3.8161 -4.8875 37 1 6.2391 -2.8280 -5.1964 38 1 7.4445 -6.8566 -7.3013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292933802.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:33 Heat of formation + Delta-G solvation = -36.077165 kcal Electronic energy + Delta-G solvation = -20760.111875 eV Core-core repulsion = 17410.077288 eV Total energy + Delta-G solvation = -3350.034587 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.16940 -39.49026 -38.61694 -35.53644 -34.60881 -32.81435 -31.95321 -31.64445 -29.93162 -28.07176 -26.63095 -24.52161 -23.33039 -22.39455 -20.77683 -20.60398 -18.82533 -18.10256 -17.54590 -16.86336 -16.40141 -15.96718 -15.44709 -15.33663 -15.17225 -14.65142 -14.32834 -14.09588 -13.94394 -13.70471 -13.62120 -13.23813 -12.72767 -12.57125 -12.45530 -12.04419 -11.56999 -11.44675 -11.17407 -10.35621 -10.24292 -9.99829 -9.92772 -9.82082 -9.57067 -9.31023 -9.19089 -9.01076 -8.60291 -8.32611 -6.08720 -4.08449 0.59243 0.90300 2.67041 3.01956 3.26743 3.34167 3.35604 3.47935 3.58858 4.00462 4.19158 4.35901 4.39715 4.51715 4.65522 4.65945 4.67976 4.88848 5.02869 5.12661 5.24266 5.25844 5.47754 5.67018 5.78346 6.12171 6.13245 6.29304 6.55278 6.63545 6.72296 6.86978 7.09118 7.28378 7.34373 7.59464 7.70375 8.34705 8.49089 8.95155 8.97946 9.51552 11.04406 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.025350 B = 0.003041 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.253767 B = 9204.628751 C = 9372.931328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.299 6.299 3 C 0.185 3.815 4 C -0.267 4.267 5 C 0.140 3.860 6 N -0.510 5.510 7 C 0.154 3.846 8 C -0.191 4.191 9 C 0.197 3.803 10 N -0.747 5.747 11 C 0.701 3.299 12 O -0.595 6.595 13 N -0.742 5.742 14 C 0.149 3.851 15 C -0.022 4.022 16 C -0.521 4.521 17 H 0.076 0.924 18 C 0.069 3.931 19 N -0.899 5.899 20 Si 0.882 3.118 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.267 1.267 24 H 0.059 0.941 25 H 0.106 0.894 26 H 0.058 0.942 27 H 0.140 0.860 28 H 0.158 0.842 29 H 0.166 0.834 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.392 0.608 33 H 0.391 0.609 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.021 0.979 37 H 0.017 0.983 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.408 20.812 12.316 29.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.209 6.209 3 C 0.131 3.869 4 C -0.287 4.287 5 C -0.016 4.016 6 N -0.222 5.222 7 C -0.003 4.003 8 C -0.195 4.195 9 C 0.072 3.928 10 N -0.403 5.403 11 C 0.401 3.599 12 O -0.473 6.473 13 N -0.396 5.396 14 C 0.026 3.974 15 C -0.060 4.060 16 C -0.560 4.560 17 H 0.094 0.906 18 C -0.133 4.133 19 N -0.538 5.538 20 Si 0.710 3.290 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.191 1.191 24 H 0.078 0.922 25 H 0.124 0.876 26 H 0.077 0.923 27 H 0.158 0.842 28 H 0.176 0.824 29 H 0.183 0.817 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.225 0.775 33 H 0.223 0.777 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.035 0.965 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.318 20.680 13.035 28.848 hybrid contribution -1.681 0.092 -1.551 2.288 sum -16.998 20.772 11.484 29.194 Atomic orbital electron populations 1.23193 0.77573 1.04769 1.01551 1.86187 1.21947 1.25769 1.87005 1.19270 0.91919 0.84892 0.90867 1.22249 1.01679 0.93137 1.11680 1.22630 0.90356 0.97030 0.91630 1.67806 1.07057 1.31929 1.15359 1.22721 1.00573 0.85936 0.91044 1.20437 0.91221 0.97542 1.10261 1.19646 0.98293 0.90857 0.84013 1.45111 1.56326 1.28812 1.10095 1.15992 0.79802 0.80321 0.83810 1.90904 1.50820 1.61611 1.43971 1.45508 1.55944 1.30759 1.07399 1.21363 0.94395 0.83259 0.98389 1.19797 0.97635 0.97651 0.90867 1.20932 1.31150 1.08263 0.95618 0.90559 1.25002 0.94901 0.94743 0.98673 1.69908 1.40970 1.21518 1.21376 0.86745 0.80620 0.79557 0.82099 1.20242 1.21315 1.19136 0.92225 0.87577 0.92306 0.84208 0.82429 0.81712 0.90544 0.90513 0.77468 0.77660 0.92154 0.92167 0.96083 0.96480 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.84 101.05 0.99 1.12 16 2 O -0.30 -2.80 9.86 -18.94 -0.19 -2.98 16 3 C 0.19 1.68 6.70 -38.82 -0.26 1.42 16 4 C -0.27 -1.90 9.11 -39.30 -0.36 -2.26 16 5 C 0.14 1.05 11.17 -17.60 -0.20 0.86 16 6 N -0.51 -4.89 10.36 -13.33 -0.14 -5.03 16 7 C 0.15 1.40 10.82 -17.59 -0.19 1.21 16 8 C -0.19 -1.84 5.28 -104.34 -0.55 -2.39 16 9 C 0.20 2.27 5.53 -5.19 -0.03 2.24 16 10 N -0.75 -9.59 5.55 -66.42 -0.37 -9.96 16 11 C 0.70 12.18 8.57 -86.92 -0.74 11.43 16 12 O -0.59 -12.79 16.34 5.29 0.09 -12.70 16 13 N -0.74 -12.76 5.56 -65.23 -0.36 -13.13 16 14 C 0.15 3.13 5.61 -4.04 -0.02 3.11 16 15 C -0.02 -0.50 4.16 -27.88 -0.12 -0.62 16 16 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 17 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 19 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 20 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 24 H 0.06 0.25 7.71 -51.93 -0.40 -0.15 16 25 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.23 7.71 -51.92 -0.40 -0.17 16 27 H 0.14 0.64 6.47 -52.49 -0.34 0.30 16 28 H 0.16 0.73 8.06 -52.48 -0.42 0.31 16 29 H 0.17 1.21 8.04 -52.49 -0.42 0.79 16 30 H 0.08 0.86 8.02 -51.93 -0.42 0.45 16 31 H 0.08 1.00 7.92 -51.93 -0.41 0.58 16 32 H 0.39 4.19 8.48 -40.82 -0.35 3.85 16 33 H 0.39 5.60 8.49 -40.82 -0.35 5.26 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 37 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 328.16 15.07 4.95 4.95 Total: -1.00 -35.21 328.16 -6.95 -42.16 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.13 Total: 4.06 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -1.90 Total: 2.91 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -0.10 Total: -54.92 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.10 Total: -15.69 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.21 -6.95 -42.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292933802.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.087 kcal (2) G-P(sol) polarization free energy of solvation -35.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds