Wall clock time and date at job start Tue Mar 31 2020 02:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35744 * 116.99755 * 2 1 4 4 C 1.39284 * 120.84561 * 0.02562 * 3 2 1 5 5 C 1.37954 * 119.08995 * 179.97438 * 4 3 2 6 6 N 1.31973 * 120.82461 * 359.73933 * 5 4 3 7 7 C 1.31947 * 121.86370 * 0.53456 * 6 5 4 8 8 C 1.37994 * 120.82167 * 359.46463 * 7 6 5 9 9 C 1.50697 * 120.45838 * 180.23639 * 8 7 6 10 10 N 1.46504 * 109.47110 * 260.00736 * 9 8 7 11 11 C 1.34781 * 119.99591 * 179.97438 * 10 9 8 12 12 O 1.21581 * 120.00305 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99376 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99798 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47167 * 180.02562 * 14 13 11 16 16 C 1.50703 * 109.47040 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00079 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99897 * 180.02562 * 16 15 14 19 19 N 1.31521 * 120.00135 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00111 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47183 * 90.00226 * 20 18 16 22 22 H 1.48500 * 109.47151 * 209.99867 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99782 * 20 18 16 24 24 H 1.08997 * 109.47193 * 60.00413 * 1 2 3 25 25 H 1.09004 * 109.47092 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47294 * 300.00291 * 1 2 3 27 27 H 1.07995 * 120.45814 * 359.95897 * 4 3 2 28 28 H 1.08004 * 119.58569 * 179.97438 * 5 4 3 29 29 H 1.08002 * 119.59362 * 179.75291 * 7 6 5 30 30 H 1.08996 * 109.46937 * 20.00116 * 9 8 7 31 31 H 1.08998 * 109.47563 * 140.00560 * 9 8 7 32 32 H 0.97001 * 120.00318 * 359.97438 * 10 9 8 33 33 H 0.96996 * 120.00695 * 0.02562 * 13 11 10 34 34 H 1.09000 * 109.47303 * 299.99728 * 14 13 11 35 35 H 1.08992 * 109.47418 * 59.99982 * 14 13 11 36 36 H 1.09003 * 109.47322 * 299.99585 * 15 14 13 37 37 H 1.09002 * 109.47358 * 60.00114 * 15 14 13 38 38 H 0.97002 * 120.00361 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 0.0005 5 6 1.9675 3.5981 0.0011 6 7 3.2864 3.6458 0.0062 7 6 4.0230 2.5511 0.0006 8 6 3.4346 1.3029 0.0001 9 6 4.2838 0.0580 -0.0010 10 7 4.3605 -0.4796 -1.3617 11 6 5.0723 -1.5979 -1.6052 12 8 5.6511 -2.1603 -0.6958 13 7 5.1423 -2.0928 -2.8568 14 6 5.9156 -3.3087 -3.1215 15 6 5.8323 -3.6521 -4.6101 16 6 6.6272 -4.9032 -4.8822 17 1 7.1407 -5.4031 -4.0743 18 6 6.6997 -5.4089 -6.1628 19 7 7.3938 -6.5005 -6.4004 20 14 5.8121 -4.5438 -7.5604 21 1 6.7160 -3.5375 -8.1732 22 1 5.4137 -5.5409 -8.5862 23 1 4.6011 -3.8654 -7.0329 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 0.2244 2.3567 0.0003 28 1 1.4006 4.5174 0.0011 29 1 5.0999 2.6329 0.0011 30 1 5.2864 0.3019 0.3502 31 1 3.8385 -0.6862 0.6592 32 1 3.8990 -0.0308 -2.0873 33 1 4.6809 -1.6440 -3.5824 34 1 6.9569 -3.1446 -2.8446 35 1 5.5092 -4.1326 -2.5350 36 1 4.7911 -3.8161 -4.8875 37 1 6.2391 -2.8280 -5.1964 38 1 7.4445 -6.8566 -7.3013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292933802.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:33 Heat of formation + Delta-G solvation = -63.856443 kcal Electronic energy + Delta-G solvation = -20761.316475 eV Core-core repulsion = 17410.077288 eV Total energy + Delta-G solvation = -3351.239187 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.82771 -40.84965 -39.21705 -36.90547 -36.03558 -34.78648 -33.03178 -32.24074 -31.63899 -28.54575 -27.73896 -26.21022 -23.91964 -23.21419 -22.59479 -21.99785 -19.64905 -19.24240 -18.89239 -18.18695 -17.38601 -16.77589 -16.70155 -16.35178 -16.05036 -15.92198 -15.36633 -15.31851 -15.19763 -15.10496 -14.60945 -14.49023 -14.03029 -13.86227 -13.33458 -13.07142 -12.98718 -12.51251 -12.17769 -12.14981 -12.12025 -11.75320 -11.54579 -11.35046 -10.77777 -10.58279 -10.35529 -10.19873 -9.88365 -9.72215 -8.28896 -6.36070 -0.03300 0.27714 1.39783 1.42484 1.53770 1.80966 2.14678 2.18288 2.37891 2.77849 3.06091 3.38896 3.44883 3.61963 3.78391 3.88367 4.18151 4.31872 4.35173 4.36961 4.43483 4.47457 4.67988 4.70732 4.73187 4.77484 4.90636 5.05132 5.16836 5.43012 5.44231 5.46011 5.54346 5.68030 6.01142 6.18620 6.24696 6.71328 6.98649 7.13046 7.28309 7.60449 8.88021 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.025350 B = 0.003041 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.253767 B = 9204.628751 C = 9372.931328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.324 6.324 3 C 0.177 3.823 4 C -0.259 4.259 5 C 0.138 3.862 6 N -0.532 5.532 7 C 0.151 3.849 8 C -0.202 4.202 9 C 0.201 3.799 10 N -0.725 5.725 11 C 0.700 3.300 12 O -0.640 6.640 13 N -0.732 5.732 14 C 0.165 3.835 15 C -0.011 4.011 16 C -0.539 4.539 17 H 0.029 0.971 18 C 0.004 3.996 19 N -0.951 5.951 20 Si 0.960 3.040 21 H -0.265 1.265 22 H -0.286 1.286 23 H -0.237 1.237 24 H 0.074 0.926 25 H 0.111 0.889 26 H 0.074 0.926 27 H 0.168 0.832 28 H 0.188 0.812 29 H 0.175 0.825 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.407 0.593 33 H 0.409 0.591 34 H 0.042 0.958 35 H 0.040 0.960 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.151 23.757 11.302 32.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.234 6.234 3 C 0.122 3.878 4 C -0.279 4.279 5 C -0.017 4.017 6 N -0.244 5.244 7 C -0.005 4.005 8 C -0.205 4.205 9 C 0.076 3.924 10 N -0.381 5.381 11 C 0.400 3.600 12 O -0.522 6.522 13 N -0.387 5.387 14 C 0.040 3.960 15 C -0.049 4.049 16 C -0.577 4.577 17 H 0.047 0.953 18 C -0.193 4.193 19 N -0.591 5.591 20 Si 0.782 3.218 21 H -0.190 1.190 22 H -0.212 1.212 23 H -0.160 1.160 24 H 0.092 0.908 25 H 0.129 0.871 26 H 0.093 0.907 27 H 0.186 0.814 28 H 0.205 0.795 29 H 0.192 0.808 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.242 0.758 33 H 0.245 0.755 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.113 23.691 12.025 32.155 hybrid contribution -0.853 -0.839 -1.123 1.641 sum -18.966 22.852 10.903 31.635 Atomic orbital electron populations 1.23450 0.75700 1.05713 1.03021 1.86156 1.24037 1.26233 1.87023 1.19446 0.91887 0.85604 0.90870 1.22512 1.03013 0.92075 1.10342 1.23176 0.89904 0.98427 0.90215 1.67855 1.08254 1.32030 1.16308 1.22866 1.01201 0.85698 0.90723 1.20234 0.91495 0.96601 1.12199 1.19606 0.98703 0.91362 0.82691 1.44945 1.54761 1.27110 1.11289 1.16115 0.79823 0.81009 0.83103 1.90878 1.52785 1.63198 1.45299 1.45116 1.55698 1.29711 1.08181 1.20875 0.93843 0.84298 0.96962 1.19640 0.97434 0.95660 0.92151 1.21261 1.31560 1.10148 0.94760 0.95258 1.26086 0.95758 0.95458 1.02036 1.70080 1.42984 1.23683 1.22395 0.85521 0.80194 0.78421 0.77617 1.18993 1.21232 1.16039 0.90755 0.87073 0.90744 0.81413 0.79541 0.80793 0.90554 0.92230 0.75787 0.75523 0.93988 0.94123 0.94539 0.94615 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.84 113.37 1.12 1.24 16 2 O -0.32 -5.54 9.86 -90.68 -0.89 -6.43 16 3 C 0.18 2.87 6.70 22.76 0.15 3.03 16 4 C -0.26 -2.90 9.11 22.45 0.20 -2.70 16 5 C 0.14 1.68 11.17 84.60 0.95 2.62 16 6 N -0.53 -9.15 10.36 -196.08 -2.03 -11.19 16 7 C 0.15 2.55 10.82 84.62 0.92 3.46 16 8 C -0.20 -3.64 5.28 -19.68 -0.10 -3.75 16 9 C 0.20 4.56 5.53 85.63 0.47 5.03 16 10 N -0.72 -17.82 5.55 -482.30 -2.68 -20.50 16 11 C 0.70 23.96 8.57 179.05 1.53 25.49 16 12 O -0.64 -28.02 16.34 -3.97 -0.06 -28.08 16 13 N -0.73 -24.23 5.56 -478.55 -2.66 -26.89 16 14 C 0.16 6.97 5.61 86.38 0.48 7.45 16 15 C -0.01 -0.50 4.16 29.85 0.12 -0.37 16 16 C -0.54 -31.14 9.66 25.60 0.25 -30.90 16 17 H 0.03 1.90 7.99 -2.91 -0.02 1.87 16 18 C 0.00 0.21 5.47 84.65 0.46 0.67 16 19 N -0.95 -59.77 13.96 21.45 0.30 -59.47 16 20 Si 0.96 42.55 27.47 68.60 1.88 44.43 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.24 -9.34 6.54 99.48 0.65 -8.69 16 24 H 0.07 0.40 7.71 -2.39 -0.02 0.38 16 25 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.07 0.38 7.71 -2.38 -0.02 0.36 16 27 H 0.17 0.85 6.47 -2.91 -0.02 0.83 16 28 H 0.19 1.03 8.06 -2.91 -0.02 1.01 16 29 H 0.18 2.38 8.04 -2.91 -0.02 2.36 16 30 H 0.08 1.73 8.02 -2.39 -0.02 1.71 16 31 H 0.06 1.57 7.92 -2.39 -0.02 1.55 16 32 H 0.41 7.84 8.48 -92.71 -0.79 7.05 16 33 H 0.41 10.58 8.49 -92.71 -0.79 9.80 16 34 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.04 1.86 8.14 -2.39 -0.02 1.85 16 36 H 0.04 1.55 7.20 -2.39 -0.02 1.53 16 37 H 0.04 1.50 7.57 -2.39 -0.02 1.48 16 38 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -78.53 328.16 -0.13 -78.66 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -0.54 Total: 18.17 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 6.56 Total: 11.30 kcal Atomic # 7 Polarization: -110.97 SS G_CDS: -7.07 Total: -118.05 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.96 Total: -34.51 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 1.88 Total: 44.43 kcal Total: -78.53 -0.13 -78.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292933802.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.802 kcal (2) G-P(sol) polarization free energy of solvation -78.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds