Wall clock time and date at job start Tue Mar 31 2020 00:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46508 * 109.46742 * 2 1 4 4 C 1.36781 * 119.99946 * 274.10922 * 3 2 1 5 5 H 1.08008 * 120.00052 * 178.83429 * 4 3 2 6 6 C 1.39099 * 120.00071 * 358.84164 * 4 3 2 7 7 N 1.31334 * 119.99851 * 25.66355 * 6 4 3 8 8 Si 1.86802 * 120.00020 * 205.66303 * 6 4 3 9 9 H 1.48500 * 109.47000 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47188 * 119.99670 * 8 6 4 11 11 H 1.48496 * 109.47495 * 240.00056 * 8 6 4 12 12 C 1.34779 * 119.99850 * 94.11208 * 3 2 1 13 13 O 1.21649 * 119.99664 * 174.81845 * 12 3 2 14 14 C 1.47251 * 119.99915 * 355.09685 * 12 3 2 15 15 C 1.39532 * 121.54740 * 77.13045 * 14 12 3 16 16 C 1.50700 * 121.03025 * 0.02562 * 15 14 12 17 17 C 1.39924 * 117.93493 * 179.78879 * 15 14 12 18 18 C 1.50701 * 119.39948 * 180.24348 * 17 15 14 19 19 N 1.30350 * 121.20326 * 0.50190 * 17 15 14 20 20 N 1.28197 * 123.69301 * 359.74071 * 19 17 15 21 21 C 1.46499 * 119.09399 * 179.97438 * 20 19 17 22 22 C 1.34821 * 121.80650 * 0.02562 * 20 19 17 23 23 O 1.21897 * 120.77478 * 179.97438 * 22 20 19 24 24 H 1.08995 * 109.47237 * 60.00340 * 1 2 3 25 25 H 1.09008 * 109.46711 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47445 * 299.99676 * 1 2 3 27 27 H 1.08998 * 109.47445 * 240.00324 * 2 1 3 28 28 H 1.08995 * 109.47237 * 119.99660 * 2 1 3 29 29 H 0.97008 * 119.99324 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47196 * 95.10648 * 16 15 14 31 31 H 1.09000 * 109.47021 * 215.10360 * 16 15 14 32 32 H 1.09001 * 109.47555 * 335.10720 * 16 15 14 33 33 H 1.08999 * 109.47343 * 180.25429 * 18 17 15 34 34 H 1.09001 * 109.47578 * 300.25556 * 18 17 15 35 35 H 1.09008 * 109.47407 * 60.25267 * 18 17 15 36 36 H 1.08999 * 109.47037 * 270.01630 * 21 20 19 37 37 H 1.08994 * 109.47440 * 30.02145 * 21 20 19 38 38 H 1.09008 * 109.47046 * 150.02696 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1662 2.0544 -1.1815 5 1 2.5082 3.0789 -1.1803 6 6 1.8760 1.4196 -2.3847 7 7 1.0211 0.4229 -2.4117 8 14 2.7021 1.9846 -3.9619 9 1 3.6162 3.1163 -3.6639 10 1 3.4796 0.8610 -4.5435 11 1 1.6679 2.4254 -4.9321 12 6 2.3218 1.9888 1.1642 13 8 2.8156 3.1005 1.1595 14 6 2.0613 1.3042 2.4416 15 6 2.8971 0.2898 2.9100 16 6 4.1058 -0.1464 2.1227 17 6 2.5811 -0.3063 4.1359 18 6 3.4646 -1.4014 4.6755 19 7 1.5336 0.0649 4.8171 20 7 0.7273 0.9860 4.4363 21 6 -0.4206 1.3223 5.2822 22 6 0.9062 1.6529 3.2783 23 8 0.1274 2.5252 2.9342 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.8191 -0.0201 -3.2508 30 1 4.9867 0.3822 2.4867 31 1 4.2503 -1.2199 2.2439 32 1 3.9546 0.0831 1.0679 33 1 3.0692 -1.7503 5.6295 34 1 3.4897 -2.2300 3.9678 35 1 4.4740 -1.0160 4.8197 36 1 -1.2732 0.7047 4.9999 37 1 -0.1686 1.1384 6.3265 38 1 -0.6741 2.3741 5.1492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330503196.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:33 Heat of formation + Delta-G solvation = 11.792963 kcal Electronic energy + Delta-G solvation = -23080.350289 eV Core-core repulsion = 19732.391507 eV Total energy + Delta-G solvation = -3347.958782 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.55736 -38.60497 -37.59411 -35.53013 -35.05431 -32.31648 -31.44980 -30.24635 -29.42907 -27.78836 -26.29231 -25.38169 -23.53420 -22.10865 -21.90452 -19.69727 -17.94542 -17.13604 -16.73170 -16.46963 -16.00841 -15.40658 -14.64421 -14.22188 -13.98474 -13.72613 -13.60395 -13.12773 -12.99628 -12.80939 -12.64494 -12.58029 -12.48119 -12.40310 -11.92270 -11.87920 -11.73393 -11.28476 -11.14191 -10.78200 -10.74636 -10.36089 -10.23987 -9.90073 -9.51072 -9.44401 -8.87221 -8.53848 -7.98150 -7.83080 -6.41206 -3.79587 0.76571 1.90987 2.40605 3.09787 3.24222 3.32526 3.55384 3.67263 4.07977 4.28725 4.61593 4.83441 4.96334 5.03538 5.10552 5.24461 5.28779 5.49506 5.55430 5.58005 5.65557 5.78402 5.85127 5.88044 6.09806 6.13750 6.20454 6.32793 6.50694 6.60667 6.69957 6.80931 7.26303 7.45980 7.78180 7.97458 8.03510 8.44508 8.45692 9.10931 9.35198 9.91398 10.55088 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.023177 B = 0.006229 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.806745 B = 4493.821344 C = 4827.739546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.117 3.883 3 N -0.422 5.422 4 C -0.303 4.303 5 H 0.109 0.891 6 C 0.032 3.968 7 N -0.857 5.857 8 Si 0.921 3.079 9 H -0.266 1.266 10 H -0.279 1.279 11 H -0.282 1.282 12 C 0.493 3.507 13 O -0.579 6.579 14 C -0.138 4.138 15 C -0.045 4.045 16 C -0.122 4.122 17 C 0.074 3.926 18 C -0.083 4.083 19 N -0.241 5.241 20 N -0.355 5.355 21 C 0.086 3.914 22 C 0.493 3.507 23 O -0.510 6.510 24 H 0.099 0.901 25 H 0.034 0.966 26 H 0.016 0.984 27 H 0.105 0.895 28 H 0.032 0.968 29 H 0.268 0.732 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.381 -8.709 11.553 14.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.006 4.006 3 N -0.138 5.138 4 C -0.431 4.431 5 H 0.127 0.873 6 C -0.172 4.172 7 N -0.497 5.497 8 Si 0.747 3.253 9 H -0.190 1.190 10 H -0.205 1.205 11 H -0.208 1.208 12 C 0.281 3.719 13 O -0.464 6.464 14 C -0.154 4.154 15 C -0.051 4.051 16 C -0.179 4.179 17 C -0.098 4.098 18 C -0.142 4.142 19 N -0.064 5.064 20 N -0.175 5.175 21 C -0.054 4.054 22 C 0.288 3.712 23 O -0.385 6.385 24 H 0.118 0.882 25 H 0.053 0.947 26 H 0.035 0.965 27 H 0.123 0.877 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.515 -7.883 11.938 14.386 hybrid contribution 0.288 0.343 -1.411 1.480 sum 1.803 -7.540 10.528 13.074 Atomic orbital electron populations 1.22135 0.96432 0.99496 1.02159 1.21711 0.95079 0.83285 1.00501 1.43749 1.53630 1.11763 1.04681 1.19812 1.42473 0.99197 0.81583 0.87326 1.25270 0.95728 0.96693 0.99484 1.70190 1.28034 1.24120 1.27318 0.85959 0.79612 0.78922 0.80849 1.19043 1.20471 1.20828 1.16781 0.86871 0.86342 0.81937 1.90644 1.49361 1.20200 1.86175 1.22911 0.95279 0.98195 0.99057 1.21336 0.96694 0.92841 0.94184 1.20966 0.94181 1.01682 1.01058 1.21403 0.94564 1.00716 0.93148 1.20529 0.97367 0.94539 1.01766 1.70231 1.02272 1.05089 1.28807 1.46376 1.23079 1.28905 1.19160 1.22031 0.85536 1.03276 0.94544 1.19115 0.87110 0.83437 0.81514 1.90927 1.46061 1.30870 1.70598 0.88234 0.94713 0.96467 0.87740 0.94940 0.92153 0.89798 0.90232 0.89589 0.90468 0.90041 0.90127 0.90577 0.89085 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.61 37.16 0.36 -2.98 16 2 C 0.12 2.71 4.57 -4.04 -0.02 2.69 16 3 N -0.42 -11.09 2.35 -116.10 -0.27 -11.36 16 4 C -0.30 -8.47 9.45 -15.02 -0.14 -8.61 16 5 H 0.11 3.23 7.29 -52.48 -0.38 2.85 16 6 C 0.03 0.81 5.05 -17.44 -0.09 0.73 16 7 N -0.86 -21.56 7.98 55.50 0.44 -21.12 16 8 Si 0.92 20.16 29.62 -169.99 -5.04 15.12 16 9 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 10 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 C 0.49 13.12 5.66 -12.60 -0.07 13.05 16 13 O -0.58 -17.51 16.69 5.23 0.09 -17.42 16 14 C -0.14 -3.07 4.62 -102.28 -0.47 -3.54 16 15 C -0.04 -0.77 4.90 -103.51 -0.51 -1.27 16 16 C -0.12 -1.77 8.69 36.01 0.31 -1.45 16 17 C 0.07 1.05 6.86 -82.59 -0.57 0.49 16 18 C -0.08 -0.75 9.07 36.01 0.33 -0.43 16 19 N -0.24 -3.67 10.68 33.61 0.36 -3.32 16 20 N -0.35 -6.08 3.62 -68.32 -0.25 -6.33 16 21 C 0.09 1.09 10.59 59.85 0.63 1.72 16 22 C 0.49 10.80 7.67 -12.77 -0.10 10.70 16 23 O -0.51 -12.84 16.35 5.01 0.08 -12.76 16 24 H 0.10 2.57 6.08 -51.93 -0.32 2.25 16 25 H 0.03 0.70 8.14 -51.92 -0.42 0.27 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.10 2.49 5.91 -51.93 -0.31 2.19 16 28 H 0.03 0.66 4.94 -51.93 -0.26 0.41 16 29 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.08 0.85 6.96 -51.93 -0.36 0.48 16 32 H 0.09 1.52 5.87 -51.93 -0.30 1.21 16 33 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 34 H 0.08 0.62 7.56 -51.93 -0.39 0.22 16 35 H 0.08 0.61 8.14 -51.92 -0.42 0.18 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 1.25 7.38 -51.92 -0.38 0.87 16 LS Contribution 312.58 15.07 4.71 4.71 Total: -1.00 -34.60 312.58 -5.00 -39.60 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -4.80 Total: 1.78 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -0.33 Total: 11.09 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.28 Total: -42.12 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: 0.17 Total: -30.18 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.04 Total: 15.12 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.60 -5.00 -39.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330503196.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.391 kcal (2) G-P(sol) polarization free energy of solvation -34.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds