Wall clock time and date at job start Tue Mar 31 2020 00:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46508 * 109.46742 * 2 1 4 4 C 1.36781 * 119.99946 * 274.10922 * 3 2 1 5 5 H 1.08008 * 120.00052 * 178.83429 * 4 3 2 6 6 C 1.39099 * 120.00071 * 358.84164 * 4 3 2 7 7 N 1.31334 * 119.99851 * 25.66355 * 6 4 3 8 8 Si 1.86802 * 120.00020 * 205.66303 * 6 4 3 9 9 H 1.48500 * 109.47000 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47188 * 119.99670 * 8 6 4 11 11 H 1.48496 * 109.47495 * 240.00056 * 8 6 4 12 12 C 1.34779 * 119.99850 * 94.11208 * 3 2 1 13 13 O 1.21649 * 119.99664 * 174.81845 * 12 3 2 14 14 C 1.47251 * 119.99915 * 355.09685 * 12 3 2 15 15 C 1.39532 * 121.54740 * 77.13045 * 14 12 3 16 16 C 1.50700 * 121.03025 * 0.02562 * 15 14 12 17 17 C 1.39924 * 117.93493 * 179.78879 * 15 14 12 18 18 C 1.50701 * 119.39948 * 180.24348 * 17 15 14 19 19 N 1.30350 * 121.20326 * 0.50190 * 17 15 14 20 20 N 1.28197 * 123.69301 * 359.74071 * 19 17 15 21 21 C 1.46499 * 119.09399 * 179.97438 * 20 19 17 22 22 C 1.34821 * 121.80650 * 0.02562 * 20 19 17 23 23 O 1.21897 * 120.77478 * 179.97438 * 22 20 19 24 24 H 1.08995 * 109.47237 * 60.00340 * 1 2 3 25 25 H 1.09008 * 109.46711 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47445 * 299.99676 * 1 2 3 27 27 H 1.08998 * 109.47445 * 240.00324 * 2 1 3 28 28 H 1.08995 * 109.47237 * 119.99660 * 2 1 3 29 29 H 0.97008 * 119.99324 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47196 * 95.10648 * 16 15 14 31 31 H 1.09000 * 109.47021 * 215.10360 * 16 15 14 32 32 H 1.09001 * 109.47555 * 335.10720 * 16 15 14 33 33 H 1.08999 * 109.47343 * 180.25429 * 18 17 15 34 34 H 1.09001 * 109.47578 * 300.25556 * 18 17 15 35 35 H 1.09008 * 109.47407 * 60.25267 * 18 17 15 36 36 H 1.08999 * 109.47037 * 270.01630 * 21 20 19 37 37 H 1.08994 * 109.47440 * 30.02145 * 21 20 19 38 38 H 1.09008 * 109.47046 * 150.02696 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1662 2.0544 -1.1815 5 1 2.5082 3.0789 -1.1803 6 6 1.8760 1.4196 -2.3847 7 7 1.0211 0.4229 -2.4117 8 14 2.7021 1.9846 -3.9619 9 1 3.6162 3.1163 -3.6639 10 1 3.4796 0.8610 -4.5435 11 1 1.6679 2.4254 -4.9321 12 6 2.3218 1.9888 1.1642 13 8 2.8156 3.1005 1.1595 14 6 2.0613 1.3042 2.4416 15 6 2.8971 0.2898 2.9100 16 6 4.1058 -0.1464 2.1227 17 6 2.5811 -0.3063 4.1359 18 6 3.4646 -1.4014 4.6755 19 7 1.5336 0.0649 4.8171 20 7 0.7273 0.9860 4.4363 21 6 -0.4206 1.3223 5.2822 22 6 0.9062 1.6529 3.2783 23 8 0.1274 2.5252 2.9342 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.8191 -0.0201 -3.2508 30 1 4.9867 0.3822 2.4867 31 1 4.2503 -1.2199 2.2439 32 1 3.9546 0.0831 1.0679 33 1 3.0692 -1.7503 5.6295 34 1 3.4897 -2.2300 3.9678 35 1 4.4740 -1.0160 4.8197 36 1 -1.2732 0.7047 4.9999 37 1 -0.1686 1.1384 6.3265 38 1 -0.6741 2.3741 5.1492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330503196.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:33 Heat of formation + Delta-G solvation = -13.214230 kcal Electronic energy + Delta-G solvation = -23081.434683 eV Core-core repulsion = 19732.391507 eV Total energy + Delta-G solvation = -3349.043176 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.96395 -40.49308 -39.11612 -37.18350 -36.83609 -34.02418 -33.09784 -31.40468 -31.34766 -28.97927 -27.78402 -26.93699 -25.09431 -23.96559 -23.26575 -21.41263 -19.43327 -18.91259 -18.53444 -17.89530 -17.57593 -17.04781 -16.49566 -16.03904 -15.49062 -15.07426 -14.93713 -14.74588 -14.61793 -14.44296 -14.06507 -13.79055 -13.71231 -13.59530 -13.47289 -13.15515 -12.93426 -12.83757 -12.77925 -12.68131 -12.25084 -12.18771 -12.12947 -11.80449 -11.12822 -10.88604 -10.79641 -10.44600 -9.88309 -9.40816 -8.40615 -5.89491 -0.68266 0.51332 1.03781 1.34595 1.42315 1.56337 1.84900 2.13510 2.28513 2.79138 2.93164 3.10200 3.44855 3.60149 3.79182 4.18042 4.29923 4.32987 4.37073 4.42947 4.53001 4.62632 4.65650 4.70492 4.80467 4.86892 4.92174 4.96099 5.01799 5.11812 5.18733 5.32027 5.41773 5.48985 5.80315 5.95388 6.44640 6.48267 7.07687 7.10494 7.35012 7.92710 8.54796 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.023177 B = 0.006229 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.806745 B = 4493.821344 C = 4827.739546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.125 3.875 3 N -0.426 5.426 4 C -0.356 4.356 5 H 0.071 0.929 6 C 0.012 3.988 7 N -0.858 5.858 8 Si 0.987 3.013 9 H -0.281 1.281 10 H -0.256 1.256 11 H -0.274 1.274 12 C 0.484 3.516 13 O -0.640 6.640 14 C -0.204 4.204 15 C -0.004 4.004 16 C -0.127 4.127 17 C 0.077 3.923 18 C -0.083 4.083 19 N -0.227 5.227 20 N -0.347 5.347 21 C 0.078 3.922 22 C 0.480 3.520 23 O -0.569 6.569 24 H 0.070 0.930 25 H 0.066 0.934 26 H -0.001 1.001 27 H 0.098 0.902 28 H 0.060 0.940 29 H 0.279 0.721 30 H 0.105 0.895 31 H 0.132 0.868 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.129 0.871 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.593 -12.589 12.771 18.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.003 3.997 3 N -0.141 5.141 4 C -0.484 4.484 5 H 0.089 0.911 6 C -0.192 4.192 7 N -0.495 5.495 8 Si 0.810 3.190 9 H -0.206 1.206 10 H -0.181 1.181 11 H -0.200 1.200 12 C 0.274 3.726 13 O -0.529 6.529 14 C -0.220 4.220 15 C -0.010 4.010 16 C -0.183 4.183 17 C -0.094 4.094 18 C -0.141 4.141 19 N -0.050 5.050 20 N -0.166 5.166 21 C -0.060 4.060 22 C 0.278 3.722 23 O -0.450 6.450 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.018 0.982 27 H 0.116 0.884 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.123 0.877 31 H 0.151 0.849 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.147 0.853 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.702 -11.854 13.188 17.937 hybrid contribution -0.049 1.401 -1.712 2.213 sum 2.653 -10.453 11.475 15.747 Atomic orbital electron populations 1.21980 0.96553 1.00724 0.99781 1.21707 0.94789 0.81874 1.01329 1.43887 1.53094 1.12727 1.04419 1.19629 1.46292 0.98795 0.83637 0.91075 1.25961 0.95126 0.96641 1.01494 1.70233 1.26772 1.23776 1.28731 0.85018 0.78482 0.78660 0.76885 1.20563 1.18062 1.19999 1.17403 0.85804 0.85957 0.83477 1.90557 1.51956 1.22921 1.87486 1.22475 0.98713 1.02179 0.98612 1.21878 0.95244 0.89400 0.94513 1.21183 0.93433 1.05200 0.98496 1.22339 0.94456 1.01011 0.91593 1.20835 0.97156 0.93109 1.03049 1.70457 1.02330 1.04039 1.28215 1.46596 1.23953 1.28102 1.17950 1.22383 0.84808 1.03042 0.95809 1.19232 0.86730 0.83432 0.82828 1.90871 1.48071 1.33670 1.72391 0.91133 0.91480 0.98210 0.88400 0.92219 0.91044 0.87693 0.84943 0.93004 0.88692 0.87409 0.87704 0.88922 0.85254 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.19 9.61 71.98 0.69 -5.50 16 2 C 0.13 5.84 4.57 86.38 0.39 6.23 16 3 N -0.43 -23.59 2.35 -639.45 -1.50 -25.10 16 4 C -0.36 -21.14 9.45 84.13 0.79 -20.35 16 5 H 0.07 4.65 7.29 -2.91 -0.02 4.62 16 6 C 0.01 0.63 5.05 84.97 0.43 1.06 16 7 N -0.86 -43.14 7.98 21.69 0.17 -42.97 16 8 Si 0.99 41.85 29.62 68.60 2.03 43.88 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 10 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 11 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 12 C 0.48 27.44 5.66 86.61 0.49 27.94 16 13 O -0.64 -42.08 16.69 -4.19 -0.07 -42.15 16 14 C -0.20 -9.34 4.62 -18.35 -0.08 -9.42 16 15 C 0.00 -0.12 4.90 -19.14 -0.09 -0.21 16 16 C -0.13 -3.29 8.69 71.24 0.62 -2.68 16 17 C 0.08 1.90 6.86 43.19 0.30 2.19 16 18 C -0.08 -0.98 9.07 71.24 0.65 -0.34 16 19 N -0.23 -6.23 10.68 -47.58 -0.51 -6.73 16 20 N -0.35 -11.60 3.62 -488.16 -1.77 -13.37 16 21 C 0.08 1.88 10.59 127.77 1.35 3.24 16 22 C 0.48 21.84 7.67 86.48 0.66 22.51 16 23 O -0.57 -30.84 16.35 -4.98 -0.08 -30.92 16 24 H 0.07 3.72 6.08 -2.39 -0.01 3.71 16 25 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 26 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 27 H 0.10 4.65 5.91 -2.39 -0.01 4.63 16 28 H 0.06 2.39 4.94 -2.39 -0.01 2.38 16 29 H 0.28 12.82 8.31 -92.70 -0.77 12.05 16 30 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.13 2.04 6.96 -2.39 -0.02 2.03 16 32 H 0.05 1.78 5.87 -2.39 -0.01 1.76 16 33 H 0.09 0.89 8.10 -2.39 -0.02 0.87 16 34 H 0.11 0.83 7.56 -2.39 -0.02 0.81 16 35 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.08 2.24 7.38 -2.38 -0.02 2.22 16 Total: -1.00 -85.08 312.58 5.56 -79.52 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 1.09 Total: 13.17 kcal Atomic # 6 Polarization: 18.47 SS G_CDS: 6.20 Total: 24.67 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -3.60 Total: -88.17 kcal Atomic # 8 Polarization: -72.92 SS G_CDS: -0.15 Total: -73.07 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -85.08 5.56 -79.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330503196.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.305 kcal (2) G-P(sol) polarization free energy of solvation -85.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds