Wall clock time and date at job start Tue Mar 31 2020 00:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.46772 * 2 1 4 4 C 1.35914 * 119.99805 * 263.50109 * 3 2 1 5 5 H 1.07993 * 120.00084 * 187.56207 * 4 3 2 6 6 C 1.39779 * 119.99979 * 7.57060 * 4 3 2 7 7 N 1.30896 * 119.99985 * 18.86469 * 6 4 3 8 8 Si 1.86797 * 119.99946 * 198.86933 * 6 4 3 9 9 H 1.48500 * 109.47217 * 59.99526 * 8 6 4 10 10 H 1.48496 * 109.47297 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46904 * 299.99918 * 8 6 4 12 12 C 1.34772 * 120.00194 * 83.23393 * 3 2 1 13 13 O 1.21545 * 119.99978 * 175.83975 * 12 3 2 14 14 C 1.48566 * 120.00010 * 355.84286 * 12 3 2 15 15 O 1.21553 * 119.99684 * 276.98206 * 14 12 3 16 16 C 1.47076 * 120.00374 * 96.98236 * 14 12 3 17 17 C 1.41502 * 126.46898 * 0.93874 * 16 14 12 18 18 C 1.50698 * 125.99415 * 0.02562 * 17 16 14 19 19 N 1.30379 * 108.00680 * 180.02562 * 17 16 14 20 20 N 1.39907 * 109.01844 * 359.97438 * 19 17 16 21 21 C 1.46492 * 125.71819 * 179.97438 * 20 19 17 22 22 C 1.34213 * 108.56946 * 359.73156 * 20 19 17 23 23 C 1.50699 * 126.33039 * 180.26470 * 22 20 19 24 24 H 1.09007 * 109.47015 * 60.00071 * 1 2 3 25 25 H 1.09000 * 109.47283 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47312 * 300.00487 * 1 2 3 27 27 H 1.08995 * 109.46958 * 239.99921 * 2 1 3 28 28 H 1.08999 * 109.47074 * 119.99306 * 2 1 3 29 29 H 0.96999 * 119.99902 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.46968 * 83.31912 * 18 17 16 31 31 H 1.09002 * 109.46765 * 203.31273 * 18 17 16 32 32 H 1.08994 * 109.47583 * 323.31908 * 18 17 16 33 33 H 1.09006 * 109.47172 * 89.97848 * 21 20 19 34 34 H 1.09003 * 109.47527 * 209.98239 * 21 20 19 35 35 H 1.09005 * 109.47389 * 329.98187 * 21 20 19 36 36 H 1.09005 * 109.47320 * 270.19464 * 23 22 20 37 37 H 1.09001 * 109.46640 * 30.18955 * 23 22 20 38 38 H 1.08997 * 109.47724 * 150.19510 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3703 1.9775 -1.1695 5 1 2.8436 2.9482 -1.1597 6 6 2.1196 1.3345 -2.3850 7 7 1.2413 0.3658 -2.4440 8 14 3.0382 1.8576 -3.9252 9 1 4.4972 1.6757 -3.7172 10 1 2.5947 1.0258 -5.0726 11 1 2.7532 3.2869 -4.2100 12 6 2.1132 2.0625 1.1590 13 8 2.5888 3.1809 1.1693 14 6 1.6366 1.4462 2.4240 15 8 0.4578 1.4941 2.7169 16 6 2.5909 0.7783 3.3220 17 6 3.9873 0.6590 3.1268 18 6 4.7669 1.1974 1.9549 19 7 4.4810 0.0016 4.1387 20 7 3.4440 -0.3274 5.0183 21 6 3.5902 -1.0669 6.2744 22 6 2.2934 0.1527 4.5213 23 6 0.9292 0.0299 5.1497 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 1.0677 -0.0807 -3.2875 30 1 4.9989 2.2489 2.1251 31 1 5.6936 0.6341 1.8455 32 1 4.1724 1.0989 1.0468 33 1 3.7735 -0.3664 7.0892 34 1 2.6767 -1.6267 6.4750 35 1 4.4294 -1.7578 6.1937 36 1 0.4499 -0.8852 4.8017 37 1 1.0306 -0.0030 6.2345 38 1 0.3204 0.8888 4.8675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330578788.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:37 Heat of formation + Delta-G solvation = 22.596811 kcal Electronic energy + Delta-G solvation = -22859.696008 eV Core-core repulsion = 19512.205716 eV Total energy + Delta-G solvation = -3347.490292 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.30956 -39.15857 -37.19559 -35.14904 -34.17899 -31.85974 -31.82013 -29.47334 -29.35048 -27.93067 -25.88718 -25.36068 -23.30124 -22.12593 -20.53403 -19.20604 -18.52185 -17.06028 -16.67727 -15.93197 -15.68669 -15.09635 -14.88879 -14.32110 -13.82656 -13.57837 -13.37467 -13.25370 -13.09815 -12.98026 -12.83788 -12.63516 -12.56051 -12.14187 -11.79962 -11.75765 -11.47770 -11.25807 -11.12225 -10.88646 -10.59183 -10.39365 -10.21327 -9.96758 -9.84872 -9.01541 -8.93607 -8.37657 -8.13975 -7.86628 -6.39398 -3.83899 1.50106 2.25203 2.42557 3.13325 3.22723 3.25964 3.46433 3.72652 4.02724 4.32977 4.56677 4.64936 4.95992 4.97747 5.04568 5.13400 5.22741 5.38724 5.47806 5.49120 5.69937 5.92834 6.11087 6.18850 6.21008 6.32447 6.41838 6.66872 6.70386 6.86090 6.87421 6.96233 7.31863 7.47491 7.67175 7.77399 7.93207 8.11507 8.43463 9.06226 9.32133 9.85748 10.56193 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.025235 B = 0.005805 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.323024 B = 4822.412392 C = 5222.916774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.107 3.893 3 N -0.410 5.410 4 C -0.311 4.311 5 H 0.109 0.891 6 C 0.032 3.968 7 N -0.859 5.859 8 Si 0.927 3.073 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.272 1.272 12 C 0.409 3.591 13 O -0.577 6.577 14 C 0.441 3.559 15 O -0.458 6.458 16 C -0.312 4.312 17 C 0.139 3.861 18 C -0.086 4.086 19 N -0.310 5.310 20 N -0.368 5.368 21 C 0.099 3.901 22 C 0.152 3.848 23 C -0.099 4.099 24 H 0.083 0.917 25 H 0.037 0.963 26 H 0.039 0.961 27 H 0.122 0.878 28 H 0.027 0.973 29 H 0.271 0.729 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.076 -6.810 11.841 13.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 N -0.127 5.127 4 C -0.438 4.438 5 H 0.127 0.873 6 C -0.172 4.172 7 N -0.498 5.498 8 Si 0.753 3.247 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.197 1.197 12 C 0.196 3.804 13 O -0.464 6.464 14 C 0.316 3.684 15 O -0.333 6.333 16 C -0.325 4.325 17 C -0.028 4.028 18 C -0.145 4.145 19 N -0.131 5.131 20 N -0.147 5.147 21 C -0.042 4.042 22 C 0.020 3.980 23 C -0.158 4.158 24 H 0.102 0.898 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.140 0.860 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.682 -6.961 12.493 14.551 hybrid contribution -0.355 0.270 -0.923 1.026 sum 2.327 -6.691 11.570 13.566 Atomic orbital electron populations 1.22121 0.96262 0.99943 1.02491 1.21849 0.95084 0.83218 1.01439 1.43575 1.52787 1.11164 1.05194 1.19749 1.36935 1.05107 0.82058 0.87284 1.25378 0.95935 0.96538 0.99341 1.69851 1.28925 1.23913 1.27062 0.85976 0.80000 0.78829 0.79855 1.19693 1.20933 1.19691 1.19605 0.88354 0.87466 0.84950 1.90646 1.50396 1.19552 1.85769 1.21550 0.86954 0.73473 0.86395 1.90480 1.18505 1.49746 1.74553 1.20667 0.95329 1.16289 1.00207 1.22663 0.92244 0.93320 0.94606 1.20526 0.99177 1.01267 0.93534 1.77097 1.10557 1.22525 1.02900 1.48250 1.04645 1.43117 1.18705 1.21883 1.04360 0.96264 0.81707 1.21784 0.89818 0.93336 0.93109 1.20690 0.90031 1.05646 0.99384 0.89817 0.94437 0.94236 0.86043 0.95486 0.91830 0.89342 0.91041 0.88327 0.90597 0.89392 0.88984 0.89450 0.91136 0.87671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.62 37.16 0.36 -3.01 16 2 C 0.11 2.48 5.06 -4.04 -0.02 2.46 16 3 N -0.41 -10.44 2.01 -115.67 -0.23 -10.67 16 4 C -0.31 -8.29 9.49 -15.17 -0.14 -8.43 16 5 H 0.11 3.04 7.23 -52.49 -0.38 2.66 16 6 C 0.03 0.81 5.09 -17.37 -0.09 0.72 16 7 N -0.86 -21.23 8.38 55.54 0.47 -20.77 16 8 Si 0.93 19.67 29.60 -169.99 -5.03 14.64 16 9 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 10 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 11 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 12 C 0.41 10.43 4.52 -12.00 -0.05 10.38 16 13 O -0.58 -16.16 16.36 5.33 0.09 -16.07 16 14 C 0.44 9.99 5.00 -31.74 -0.16 9.83 16 15 O -0.46 -10.45 13.77 5.32 0.07 -10.38 16 16 C -0.31 -6.16 6.03 -104.97 -0.63 -6.79 16 17 C 0.14 2.66 7.26 -81.97 -0.60 2.07 16 18 C -0.09 -1.60 9.15 36.00 0.33 -1.28 16 19 N -0.31 -5.43 12.49 33.93 0.42 -5.00 16 20 N -0.37 -5.35 3.98 -63.23 -0.25 -5.60 16 21 C 0.10 0.84 11.05 59.84 0.66 1.50 16 22 C 0.15 2.41 7.02 -81.46 -0.57 1.84 16 23 C -0.10 -1.20 9.35 36.01 0.34 -0.86 16 24 H 0.08 2.07 6.67 -51.92 -0.35 1.72 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.04 0.90 5.92 -51.93 -0.31 0.59 16 27 H 0.12 2.94 5.50 -51.93 -0.29 2.65 16 28 H 0.03 0.59 7.19 -51.93 -0.37 0.21 16 29 H 0.27 6.34 8.30 -40.82 -0.34 6.00 16 30 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.10 2.08 5.61 -51.93 -0.29 1.79 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.52 7.64 -51.93 -0.40 0.12 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.60 7.71 -51.93 -0.40 0.20 16 38 H 0.10 1.47 6.51 -51.93 -0.34 1.13 16 LS Contribution 313.67 15.07 4.73 4.73 Total: -1.00 -31.62 313.67 -5.11 -36.73 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -4.79 Total: 3.96 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -0.58 Total: 8.44 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.40 Total: -42.05 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: 0.16 Total: -26.45 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.62 -5.11 -36.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330578788.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.329 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds