Wall clock time and date at job start Tue Mar 31 2020 00:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.46772 * 2 1 4 4 C 1.35914 * 119.99805 * 263.50109 * 3 2 1 5 5 H 1.07993 * 120.00084 * 187.56207 * 4 3 2 6 6 C 1.39779 * 119.99979 * 7.57060 * 4 3 2 7 7 N 1.30896 * 119.99985 * 18.86469 * 6 4 3 8 8 Si 1.86797 * 119.99946 * 198.86933 * 6 4 3 9 9 H 1.48500 * 109.47217 * 59.99526 * 8 6 4 10 10 H 1.48496 * 109.47297 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46904 * 299.99918 * 8 6 4 12 12 C 1.34772 * 120.00194 * 83.23393 * 3 2 1 13 13 O 1.21545 * 119.99978 * 175.83975 * 12 3 2 14 14 C 1.48566 * 120.00010 * 355.84286 * 12 3 2 15 15 O 1.21553 * 119.99684 * 276.98206 * 14 12 3 16 16 C 1.47076 * 120.00374 * 96.98236 * 14 12 3 17 17 C 1.41502 * 126.46898 * 0.93874 * 16 14 12 18 18 C 1.50698 * 125.99415 * 0.02562 * 17 16 14 19 19 N 1.30379 * 108.00680 * 180.02562 * 17 16 14 20 20 N 1.39907 * 109.01844 * 359.97438 * 19 17 16 21 21 C 1.46492 * 125.71819 * 179.97438 * 20 19 17 22 22 C 1.34213 * 108.56946 * 359.73156 * 20 19 17 23 23 C 1.50699 * 126.33039 * 180.26470 * 22 20 19 24 24 H 1.09007 * 109.47015 * 60.00071 * 1 2 3 25 25 H 1.09000 * 109.47283 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47312 * 300.00487 * 1 2 3 27 27 H 1.08995 * 109.46958 * 239.99921 * 2 1 3 28 28 H 1.08999 * 109.47074 * 119.99306 * 2 1 3 29 29 H 0.96999 * 119.99902 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.46968 * 83.31912 * 18 17 16 31 31 H 1.09002 * 109.46765 * 203.31273 * 18 17 16 32 32 H 1.08994 * 109.47583 * 323.31908 * 18 17 16 33 33 H 1.09006 * 109.47172 * 89.97848 * 21 20 19 34 34 H 1.09003 * 109.47527 * 209.98239 * 21 20 19 35 35 H 1.09005 * 109.47389 * 329.98187 * 21 20 19 36 36 H 1.09005 * 109.47320 * 270.19464 * 23 22 20 37 37 H 1.09001 * 109.46640 * 30.18955 * 23 22 20 38 38 H 1.08997 * 109.47724 * 150.19510 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3703 1.9775 -1.1695 5 1 2.8436 2.9482 -1.1597 6 6 2.1196 1.3345 -2.3850 7 7 1.2413 0.3658 -2.4440 8 14 3.0382 1.8576 -3.9252 9 1 4.4972 1.6757 -3.7172 10 1 2.5947 1.0258 -5.0726 11 1 2.7532 3.2869 -4.2100 12 6 2.1132 2.0625 1.1590 13 8 2.5888 3.1809 1.1693 14 6 1.6366 1.4462 2.4240 15 8 0.4578 1.4941 2.7169 16 6 2.5909 0.7783 3.3220 17 6 3.9873 0.6590 3.1268 18 6 4.7669 1.1974 1.9549 19 7 4.4810 0.0016 4.1387 20 7 3.4440 -0.3274 5.0183 21 6 3.5902 -1.0669 6.2744 22 6 2.2934 0.1527 4.5213 23 6 0.9292 0.0299 5.1497 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 1.0677 -0.0807 -3.2875 30 1 4.9989 2.2489 2.1251 31 1 5.6936 0.6341 1.8455 32 1 4.1724 1.0989 1.0468 33 1 3.7735 -0.3664 7.0892 34 1 2.6767 -1.6267 6.4750 35 1 4.4294 -1.7578 6.1937 36 1 0.4499 -0.8852 4.8017 37 1 1.0306 -0.0030 6.2345 38 1 0.3204 0.8888 4.8675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330578788.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:37 Heat of formation + Delta-G solvation = 2.253536 kcal Electronic energy + Delta-G solvation = -22860.578159 eV Core-core repulsion = 19512.205716 eV Total energy + Delta-G solvation = -3348.372443 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.64493 -40.95315 -38.99061 -37.13396 -35.39378 -33.82737 -33.00338 -31.36278 -30.58143 -29.31430 -27.47224 -26.69685 -24.99069 -23.93979 -22.07793 -20.45366 -20.19988 -18.93647 -18.38926 -17.49186 -16.94094 -16.74905 -16.50474 -16.07449 -15.41252 -14.96292 -14.90920 -14.80835 -14.56836 -14.40860 -14.25521 -13.96046 -13.69009 -13.44183 -13.34751 -13.15967 -12.93457 -12.85409 -12.83849 -12.72737 -12.26714 -12.09279 -11.97493 -11.79868 -11.57507 -10.88953 -10.23744 -10.05843 -9.84700 -9.70206 -8.33834 -5.87357 0.07748 0.81312 1.33421 1.39514 1.47620 1.56747 1.81733 1.93640 2.26340 2.68021 3.06122 3.31596 3.47660 3.66075 3.84879 4.05881 4.30048 4.33016 4.39641 4.40618 4.59660 4.65668 4.66929 4.73510 4.80823 4.86831 4.90874 4.96358 5.06053 5.08510 5.37611 5.42387 5.49661 5.75289 5.86560 5.94992 6.32119 6.45962 6.51904 7.07512 7.34840 7.89397 8.60530 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.025235 B = 0.005805 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.323024 B = 4822.412392 C = 5222.916774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.112 3.888 3 N -0.412 5.412 4 C -0.352 4.352 5 H 0.084 0.916 6 C 0.009 3.991 7 N -0.862 5.862 8 Si 0.991 3.009 9 H -0.268 1.268 10 H -0.268 1.268 11 H -0.277 1.277 12 C 0.395 3.605 13 O -0.619 6.619 14 C 0.444 3.556 15 O -0.472 6.472 16 C -0.355 4.355 17 C 0.124 3.876 18 C -0.080 4.080 19 N -0.317 5.317 20 N -0.354 5.354 21 C 0.082 3.918 22 C 0.173 3.827 23 C -0.098 4.098 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.031 0.969 27 H 0.113 0.887 28 H 0.040 0.960 29 H 0.279 0.721 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.039 -9.125 13.391 16.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.010 4.010 3 N -0.128 5.128 4 C -0.479 4.479 5 H 0.102 0.898 6 C -0.196 4.196 7 N -0.500 5.500 8 Si 0.814 3.186 9 H -0.193 1.193 10 H -0.192 1.192 11 H -0.202 1.202 12 C 0.183 3.817 13 O -0.509 6.509 14 C 0.322 3.678 15 O -0.348 6.348 16 C -0.368 4.368 17 C -0.043 4.043 18 C -0.139 4.139 19 N -0.139 5.139 20 N -0.132 5.132 21 C -0.056 4.056 22 C 0.038 3.962 23 C -0.156 4.156 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.050 0.950 27 H 0.131 0.869 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.142 0.858 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.134 0.866 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.648 -9.331 14.062 17.083 hybrid contribution -0.346 0.897 -1.314 1.628 sum 2.303 -8.434 12.748 15.458 Atomic orbital electron populations 1.21972 0.95527 1.01258 1.00804 1.21837 0.95526 0.82152 1.01534 1.43715 1.52250 1.11839 1.05046 1.19692 1.39414 1.05302 0.83532 0.89812 1.26094 0.95910 0.96281 1.01308 1.69904 1.28237 1.23580 1.28236 0.85045 0.78837 0.78245 0.76507 1.19268 1.19220 1.20228 1.20235 0.88006 0.87275 0.86148 1.90583 1.52302 1.21361 1.86640 1.21236 0.87423 0.73579 0.85608 1.90455 1.18822 1.50947 1.74625 1.20510 0.95037 1.19172 1.02088 1.22624 0.92278 0.94211 0.95234 1.20363 0.99714 1.01116 0.92664 1.77018 1.11775 1.22179 1.02923 1.48734 1.03400 1.41736 1.19323 1.22504 1.06884 0.96860 0.79343 1.22215 0.91621 0.90915 0.91471 1.20855 0.87221 1.05525 1.01983 0.92278 0.91555 0.94953 0.86942 0.94162 0.90973 0.90438 0.88757 0.91218 0.88343 0.85798 0.87875 0.87504 0.86600 0.89752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.19 9.62 71.98 0.69 -5.49 16 2 C 0.11 5.28 5.06 86.38 0.44 5.72 16 3 N -0.41 -21.93 2.01 -638.16 -1.28 -23.21 16 4 C -0.35 -19.63 9.49 84.43 0.80 -18.83 16 5 H 0.08 5.00 7.23 -2.91 -0.02 4.98 16 6 C 0.01 0.43 5.09 85.21 0.43 0.87 16 7 N -0.86 -42.56 8.38 21.80 0.18 -42.38 16 8 Si 0.99 40.50 29.60 68.60 2.03 42.53 16 9 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 10 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 11 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 12 C 0.39 21.22 4.52 87.00 0.39 21.61 16 13 O -0.62 -37.04 16.36 -3.86 -0.06 -37.10 16 14 C 0.44 20.72 5.00 27.35 0.14 20.86 16 15 O -0.47 -21.97 13.77 -3.88 -0.05 -22.02 16 16 C -0.36 -14.01 6.03 -20.09 -0.12 -14.14 16 17 C 0.12 4.76 7.26 43.58 0.32 5.08 16 18 C -0.08 -3.10 9.15 71.24 0.65 -2.45 16 19 N -0.32 -10.64 12.49 -46.57 -0.58 -11.22 16 20 N -0.35 -9.16 3.98 -353.96 -1.41 -10.57 16 21 C 0.08 1.00 11.05 127.77 1.41 2.41 16 22 C 0.17 5.09 7.02 42.26 0.30 5.38 16 23 C -0.10 -2.01 9.35 71.24 0.67 -1.34 16 24 H 0.06 2.94 6.67 -2.38 -0.02 2.92 16 25 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 26 H 0.03 1.48 5.92 -2.39 -0.01 1.46 16 27 H 0.11 5.49 5.50 -2.39 -0.01 5.48 16 28 H 0.04 1.77 7.19 -2.39 -0.02 1.75 16 29 H 0.28 12.78 8.30 -92.71 -0.77 12.01 16 30 H 0.08 3.10 8.14 -2.38 -0.02 3.08 16 31 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 32 H 0.07 3.12 5.61 -2.39 -0.01 3.11 16 33 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.12 0.69 7.64 -2.39 -0.02 0.67 16 35 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.12 1.32 7.71 -2.39 -0.02 1.31 16 38 H 0.08 2.19 6.51 -2.39 -0.02 2.18 16 Total: -1.00 -72.46 313.67 6.03 -66.43 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 1.09 Total: 17.88 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: 6.12 Total: 19.68 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -3.09 Total: -87.39 kcal Atomic # 8 Polarization: -59.01 SS G_CDS: -0.12 Total: -59.13 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -72.46 6.03 -66.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330578788.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.682 kcal (2) G-P(sol) polarization free energy of solvation -72.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds