Wall clock time and date at job start Tue Mar 31 2020 01:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40076 * 126.12101 * 2 1 4 4 C 1.30997 * 108.48913 * 180.17464 * 3 2 1 5 5 C 1.50693 * 125.73158 * 179.85445 * 4 3 2 6 6 H 1.09007 * 109.57105 * 334.52548 * 5 4 3 7 7 C 1.53176 * 109.52777 * 94.68535 * 5 4 3 8 8 C 1.53181 * 109.03560 * 176.88816 * 7 5 4 9 9 C 1.53095 * 109.15940 * 303.01673 * 8 7 5 10 10 O 1.42895 * 109.41568 * 57.61417 * 9 8 7 11 11 C 1.42902 * 114.09785 * 298.83742 * 10 9 8 12 12 C 1.39472 * 108.53753 * 359.57856 * 4 3 2 13 13 C 1.36062 * 126.11927 * 179.71064 * 2 1 3 14 14 N 1.38587 * 126.31535 * 359.97438 * 13 2 1 15 15 C 1.34776 * 120.00440 * 180.02562 * 14 13 2 16 16 O 1.21817 * 119.99835 * 0.02562 * 15 14 13 17 17 C 1.41532 * 120.00254 * 180.02562 * 15 14 13 18 18 H 1.07996 * 120.00161 * 359.97438 * 17 15 14 19 19 C 1.40166 * 119.99613 * 180.02562 * 17 15 14 20 20 N 1.30608 * 120.00355 * 0.02562 * 19 17 15 21 21 Si 1.86805 * 119.99474 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47396 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46545 * 120.00467 * 21 19 17 24 24 H 1.48500 * 109.47290 * 240.00110 * 21 19 17 25 25 H 1.08998 * 109.46961 * 270.29595 * 1 2 3 26 26 H 1.08996 * 109.46881 * 30.28963 * 1 2 3 27 27 H 1.08995 * 109.46802 * 150.29041 * 1 2 3 28 28 H 1.08996 * 109.54020 * 296.75338 * 7 5 4 29 29 H 1.08999 * 109.54288 * 57.01871 * 7 5 4 30 30 H 1.08994 * 109.52035 * 62.92686 * 8 7 5 31 31 H 1.09005 * 109.51661 * 183.05324 * 8 7 5 32 32 H 1.09010 * 109.47455 * 177.59523 * 9 8 7 33 33 H 1.09000 * 109.48358 * 297.61585 * 9 8 7 34 34 H 1.08995 * 109.47976 * 301.17466 * 11 10 9 35 35 H 1.09004 * 109.48145 * 181.14340 * 11 10 9 36 36 H 1.08002 * 126.07861 * 180.29928 * 12 4 3 37 37 H 0.97006 * 119.99796 * 0.02562 * 14 13 2 38 38 H 0.97004 * 120.00320 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2907 1.1315 0.0000 4 6 3.5392 0.7347 -0.0038 5 6 4.7484 1.6340 -0.0083 6 1 4.4866 2.5956 -0.4498 7 6 5.2343 1.8458 1.4289 8 6 6.5078 2.6966 1.4054 9 6 7.5584 2.0045 0.5330 10 8 7.0314 1.8101 -0.7810 11 6 5.8670 0.9830 -0.8261 12 6 3.5612 -0.6598 0.0034 13 6 2.2670 -1.0991 0.0056 14 7 1.8488 -2.4203 0.0127 15 6 2.7581 -3.4151 0.0182 16 8 3.9477 -3.1528 0.0173 17 6 2.3309 -4.7644 0.0250 18 1 1.2763 -4.9969 0.0262 19 6 3.2767 -5.7988 0.0312 20 7 4.5522 -5.5176 0.0313 21 14 2.7129 -7.5797 0.0409 22 1 1.2287 -7.6291 0.0398 23 1 3.2316 -8.2696 -1.1675 24 1 3.2302 -8.2562 1.2574 25 1 -0.3633 0.0053 1.0276 26 1 -0.3633 0.8874 -0.5183 27 1 -0.3633 -0.8926 -0.5093 28 1 4.4630 2.3597 2.0025 29 1 5.4490 0.8804 1.8872 30 1 6.2816 3.6796 0.9925 31 1 6.8909 2.8069 2.4200 32 1 8.4520 2.6264 0.4780 33 1 7.8140 1.0387 0.9689 34 1 6.1002 0.0038 -0.4082 35 1 5.5420 0.8690 -1.8603 36 1 4.4441 -1.2819 0.0070 37 1 0.9015 -2.6292 0.0138 38 1 5.2068 -6.2335 0.0352 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330946550.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:00 Heat of formation + Delta-G solvation = -35.978552 kcal Electronic energy + Delta-G solvation = -21938.722846 eV Core-core repulsion = 18588.692536 eV Total energy + Delta-G solvation = -3350.030311 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.27680 -40.23516 -39.47830 -35.96288 -35.09604 -34.43373 -33.62122 -31.89414 -30.39339 -28.33262 -27.29586 -25.91993 -24.71640 -23.36974 -21.77151 -20.95816 -20.62920 -19.15190 -18.19502 -17.55286 -17.01490 -16.90073 -16.55965 -16.25428 -15.75077 -15.65259 -15.16340 -14.94539 -14.79770 -14.63868 -14.07106 -13.75047 -13.49269 -13.42022 -13.27902 -13.11747 -12.84719 -12.75376 -12.46293 -12.10563 -11.99622 -11.89236 -11.51167 -11.45920 -11.25178 -10.95581 -10.47844 -9.86048 -9.62479 -8.79971 -8.42576 -7.06650 0.93171 1.38473 1.40532 1.47030 1.60204 1.88210 2.20880 2.43830 2.74999 2.94381 3.50366 3.60299 3.77991 3.91999 3.95427 4.06156 4.23281 4.30583 4.39412 4.49888 4.58103 4.64784 4.70504 4.77569 4.82771 4.92843 5.00115 5.04305 5.17442 5.18259 5.29049 5.37522 5.46048 5.79169 5.93176 6.05753 6.22315 6.38403 6.70146 6.81040 7.31437 8.31314 8.51178 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018429 B = 0.004887 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.996949 B = 5727.931082 C = 6956.926986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.403 5.403 3 N -0.324 5.324 4 C 0.093 3.907 5 C -0.028 4.028 6 H 0.097 0.903 7 C -0.109 4.109 8 C -0.143 4.143 9 C 0.047 3.953 10 O -0.392 6.392 11 C 0.078 3.922 12 C -0.326 4.326 13 C 0.329 3.671 14 N -0.661 5.661 15 C 0.531 3.469 16 O -0.594 6.594 17 C -0.556 4.556 18 H 0.096 0.904 19 C 0.034 3.966 20 N -0.796 5.796 21 Si 1.003 2.997 22 H -0.244 1.244 23 H -0.268 1.268 24 H -0.268 1.268 25 H 0.084 0.916 26 H 0.104 0.896 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.046 0.954 34 H 0.041 0.959 35 H 0.091 0.909 36 H 0.139 0.861 37 H 0.407 0.593 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.339 9.949 1.908 10.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.193 5.193 3 N -0.147 5.147 4 C -0.073 4.073 5 C -0.048 4.048 6 H 0.115 0.885 7 C -0.148 4.148 8 C -0.181 4.181 9 C -0.029 4.029 10 O -0.311 6.311 11 C 0.001 3.999 12 C -0.359 4.359 13 C 0.106 3.894 14 N -0.309 5.309 15 C 0.341 3.659 16 O -0.479 6.479 17 C -0.591 4.591 18 H 0.114 0.886 19 C -0.185 4.185 20 N -0.424 5.424 21 Si 0.822 3.178 22 H -0.166 1.166 23 H -0.193 1.193 24 H -0.193 1.193 25 H 0.102 0.898 26 H 0.123 0.877 27 H 0.114 0.886 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.138 0.862 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.109 0.891 36 H 0.156 0.844 37 H 0.243 0.757 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.201 11.062 1.743 11.647 hybrid contribution -0.331 -1.882 0.217 1.923 sum -3.532 9.180 1.961 10.030 Atomic orbital electron populations 1.22075 0.72335 1.05612 1.04344 1.48839 1.07106 1.01259 1.62110 1.77122 1.01029 1.06326 1.30268 1.22023 0.93511 0.93157 0.98571 1.20086 0.89313 0.97099 0.98332 0.88494 1.21576 0.98566 1.00404 0.94207 1.22161 0.94513 0.99483 1.01895 1.22873 0.97094 1.00278 0.82622 1.87891 1.43283 1.70434 1.29509 1.22394 0.84514 0.92436 1.00580 1.21391 0.96333 0.94267 1.23885 1.18619 0.91126 0.82044 0.97637 1.43314 1.11273 1.00743 1.75579 1.17419 0.84753 0.85484 0.78261 1.90580 1.17794 1.83384 1.56171 1.20469 0.96075 0.89419 1.53120 0.88598 1.27007 0.93977 1.06577 0.90941 1.70140 1.03201 1.36236 1.32869 0.84886 0.80213 0.74099 0.78648 1.16641 1.19285 1.19270 0.89784 0.87736 0.88552 0.91017 0.93081 0.89914 0.88472 0.86226 0.93608 0.94091 0.89127 0.84379 0.75699 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.31 11.30 127.77 1.44 3.75 16 2 N -0.40 -14.91 4.05 -366.12 -1.48 -16.39 16 3 N -0.32 -12.63 12.57 -47.56 -0.60 -13.23 16 4 C 0.09 3.72 6.12 42.98 0.26 3.99 16 5 C -0.03 -0.90 2.85 -11.45 -0.03 -0.94 16 6 H 0.10 2.94 8.14 -2.38 -0.02 2.92 16 7 C -0.11 -3.10 5.29 30.71 0.16 -2.93 16 8 C -0.14 -3.05 6.14 30.69 0.19 -2.86 16 9 C 0.05 1.12 6.84 72.01 0.49 1.61 16 10 O -0.39 -11.95 10.77 -148.98 -1.60 -13.56 16 11 C 0.08 2.65 5.76 72.01 0.41 3.07 16 12 C -0.33 -15.55 8.80 22.20 0.20 -15.36 16 13 C 0.33 14.69 7.68 131.49 1.01 15.70 16 14 N -0.66 -29.71 5.37 -316.33 -1.70 -31.41 16 15 C 0.53 29.48 7.52 85.05 0.64 30.12 16 16 O -0.59 -37.81 11.98 -4.72 -0.06 -37.87 16 17 C -0.56 -29.17 9.30 23.55 0.22 -28.95 16 18 H 0.10 4.38 7.85 -2.91 -0.02 4.36 16 19 C 0.03 1.76 5.50 85.34 0.47 2.23 16 20 N -0.80 -45.68 11.72 21.86 0.26 -45.42 16 21 Si 1.00 37.62 29.56 68.60 2.03 39.65 16 22 H -0.24 -8.34 7.11 99.48 0.71 -7.63 16 23 H -0.27 -9.76 7.11 99.48 0.71 -9.06 16 24 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 25 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.10 1.94 7.53 -2.39 -0.02 1.93 16 28 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.12 2.11 8.14 -2.38 -0.02 2.10 16 33 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.04 1.58 7.16 -2.39 -0.02 1.56 16 35 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 36 H 0.14 7.66 5.10 -2.91 -0.01 7.64 16 37 H 0.41 14.77 7.95 -92.70 -0.74 14.03 16 38 H 0.28 14.48 8.29 -92.71 -0.77 13.71 16 Total: -1.00 -74.19 315.73 2.66 -71.54 By element: Atomic # 1 Polarization: 36.91 SS G_CDS: 0.35 Total: 37.26 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 5.47 Total: 9.43 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -3.52 Total: -106.45 kcal Atomic # 8 Polarization: -49.76 SS G_CDS: -1.66 Total: -51.42 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 2.03 Total: 39.65 kcal Total: -74.19 2.66 -71.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330946550.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.557 kcal (2) G-P(sol) polarization free energy of solvation -74.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds