Wall clock time and date at job start Tue Mar 31 2020 01:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34421 * 124.34848 * 2 1 4 4 O 1.21276 * 124.94036 * 359.57363 * 3 2 1 5 5 C 1.51280 * 110.11344 * 179.56950 * 3 2 1 6 6 C 1.54626 * 104.19639 * 343.74932 * 5 3 2 7 7 C 1.46756 * 124.34858 * 179.97438 * 2 1 3 8 8 H 1.08999 * 110.32171 * 78.00453 * 7 2 1 9 9 C 1.50694 * 110.25066 * 316.03848 * 7 2 1 10 10 O 1.21290 * 119.99969 * 343.95295 * 9 7 2 11 11 N 1.34781 * 120.00287 * 163.95024 * 9 7 2 12 12 C 1.46504 * 119.99832 * 179.97438 * 11 9 7 13 13 C 1.50695 * 109.47420 * 270.00196 * 12 11 9 14 14 H 1.08004 * 119.99994 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00109 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99647 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99790 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47309 * 89.99865 * 17 15 13 19 19 H 1.48507 * 109.46782 * 209.99997 * 17 15 13 20 20 H 1.48497 * 109.47264 * 329.99637 * 17 15 13 21 21 C 1.46499 * 119.99786 * 0.02562 * 11 9 7 22 22 C 1.53000 * 109.46840 * 269.99584 * 21 11 9 23 23 C 1.47201 * 109.46973 * 180.02562 * 22 21 11 24 24 N 6.55816 * 113.30797 * 211.86747 * 2 1 3 25 25 H 1.09002 * 109.46927 * 270.02066 * 1 2 3 26 26 H 1.08997 * 109.46878 * 30.02195 * 1 2 3 27 27 H 1.09004 * 109.47138 * 150.02107 * 1 2 3 28 28 H 1.08998 * 110.48282 * 225.07051 * 5 3 2 29 29 H 1.09004 * 110.59251 * 102.48541 * 5 3 2 30 30 H 1.08996 * 110.97402 * 266.67455 * 6 5 3 31 31 H 1.09004 * 110.99741 * 142.93240 * 6 5 3 32 32 H 1.08999 * 109.47380 * 30.00717 * 12 11 9 33 33 H 1.09001 * 109.46721 * 150.00109 * 12 11 9 34 34 H 0.97006 * 119.99665 * 180.02562 * 16 15 13 35 35 H 1.09001 * 109.46813 * 149.99858 * 21 11 9 36 36 H 1.08992 * 109.47397 * 29.99919 * 21 11 9 37 37 H 1.09002 * 109.47398 * 300.00326 * 22 21 11 38 38 H 1.09001 * 109.47194 * 60.00507 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2235 1.1098 0.0000 4 8 1.7946 2.2442 -0.0074 5 6 3.6898 0.7378 0.0107 6 6 3.7009 -0.7486 0.4365 7 6 2.2931 -1.2116 0.0005 8 1 2.3313 -1.6445 -0.9991 9 6 1.7472 -2.2160 0.9824 10 8 0.9519 -1.8663 1.8288 11 7 2.1426 -3.5030 0.9201 12 6 1.6122 -4.4793 1.8751 13 6 2.5020 -4.5278 3.0904 14 1 3.3750 -3.8944 3.1461 15 6 2.2015 -5.3807 4.1312 16 7 1.1382 -6.1516 4.0635 17 14 3.3041 -5.4402 5.6379 18 1 2.8285 -4.4516 6.6387 19 1 3.2619 -6.8021 6.2287 20 1 4.6984 -5.1145 5.2442 21 6 3.1036 -3.9254 -0.1018 22 6 2.3508 -4.3629 -1.3599 23 6 3.3163 -4.7878 -2.3866 24 7 4.0599 -5.1151 -3.1799 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8902 -0.5135 28 1 4.2323 1.3461 0.7344 29 1 4.1218 0.8532 -0.9834 30 1 3.8264 -0.8445 1.5150 31 1 4.4755 -1.3014 -0.0950 32 1 0.6056 -4.1861 2.1732 33 1 1.5807 -5.4638 1.4084 34 1 0.9266 -6.7514 4.7959 35 1 3.6937 -4.7598 0.2771 36 1 3.7647 -3.0936 -0.3448 37 1 1.6896 -5.1947 -1.1169 38 1 1.7607 -3.5284 -1.7389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331109763.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:54 Heat of formation + Delta-G solvation = -35.346522 kcal Electronic energy + Delta-G solvation = -22194.658849 eV Core-core repulsion = 18844.655945 eV Total energy + Delta-G solvation = -3350.002904 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.84683 -38.92286 -36.99961 -36.12359 -35.40302 -33.00960 -32.71380 -30.97606 -28.96596 -26.81751 -26.56833 -24.23952 -23.30562 -22.04558 -19.74393 -18.73657 -17.70060 -17.43893 -16.63083 -16.51186 -15.83894 -15.70236 -14.83948 -14.78974 -14.47358 -14.16331 -13.89027 -13.86279 -13.40162 -13.12528 -12.85224 -12.68624 -12.44627 -12.42933 -12.23511 -12.01548 -11.85587 -11.66133 -11.39065 -11.25858 -11.06105 -10.91336 -10.70836 -10.27423 -9.85756 -9.80626 -9.45244 -8.55276 -8.51458 -8.00110 -6.17174 -4.22260 2.56024 2.62891 2.72661 2.92326 3.05292 3.24314 3.31368 3.32604 3.52066 4.00555 4.23872 4.34250 4.39708 4.69098 4.76857 4.85614 4.97966 5.07214 5.17179 5.20702 5.32510 5.36694 5.54462 5.66486 5.66719 5.72894 5.87155 5.95244 6.05206 6.43092 6.77352 7.10179 7.21489 7.29997 7.48478 7.78109 8.05051 8.07563 8.17583 8.66556 8.83950 9.43790 10.90983 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.012749 B = 0.006195 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.662403 B = 4518.330038 C = 5774.970801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.598 5.598 3 C 0.519 3.481 4 O -0.537 6.537 5 C -0.153 4.153 6 C -0.123 4.123 7 C 0.107 3.893 8 H 0.099 0.901 9 C 0.501 3.499 10 O -0.516 6.516 11 N -0.591 5.591 12 C 0.245 3.755 13 C -0.531 4.531 14 H 0.059 0.941 15 C 0.064 3.936 16 N -0.892 5.892 17 Si 0.897 3.103 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.112 3.888 22 C -0.052 4.052 23 C 0.215 3.785 24 N -0.442 5.442 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.047 0.953 33 H 0.037 0.963 34 H 0.264 0.736 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.268 6.401 -10.632 12.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.331 5.331 3 C 0.306 3.694 4 O -0.415 6.415 5 C -0.193 4.193 6 C -0.161 4.161 7 C -0.001 4.001 8 H 0.116 0.884 9 C 0.286 3.714 10 O -0.391 6.391 11 N -0.323 5.323 12 C 0.127 3.873 13 C -0.570 4.570 14 H 0.077 0.923 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.724 3.276 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.014 4.014 22 C -0.093 4.093 23 C -0.103 4.103 24 N -0.119 5.119 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.137 0.863 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.493 6.533 -11.236 13.459 hybrid contribution 0.238 -0.268 1.209 1.261 sum 3.732 6.265 -10.028 12.399 Atomic orbital electron populations 1.21557 0.77333 1.01973 1.03149 1.47846 1.06846 1.05831 1.72589 1.20813 0.89236 0.84172 0.75131 1.90706 1.78803 1.20929 1.51032 1.22352 0.94894 0.97300 1.04755 1.22639 0.94295 0.95123 1.04071 1.21828 0.91846 0.86703 0.99772 0.88371 1.20326 0.82684 0.83028 0.85407 1.90726 1.33851 1.78133 1.36424 1.48218 1.43406 1.08820 1.31877 1.19388 0.95856 0.85772 0.86296 1.21380 1.10724 1.22717 1.02142 0.92309 1.24910 0.95334 0.95274 0.98374 1.69912 1.25684 1.24678 1.32830 0.86521 0.80760 0.77340 0.82955 1.20544 1.21128 1.19871 1.21429 0.91456 1.02082 0.86459 1.19908 0.94752 1.04117 0.90540 1.29035 0.94101 0.93177 0.93953 1.81207 1.10308 1.09368 1.11022 0.91168 0.91197 0.91372 0.87714 0.87616 0.88808 0.88272 0.93536 0.94510 0.92586 0.88321 0.90510 0.86309 0.87674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.35 9.56 59.85 0.57 1.92 16 2 N -0.60 -8.24 3.01 -174.03 -0.52 -8.76 16 3 C 0.52 7.43 8.02 -10.86 -0.09 7.34 16 4 O -0.54 -9.60 17.59 5.56 0.10 -9.50 16 5 C -0.15 -1.52 6.86 -26.74 -0.18 -1.70 16 6 C -0.12 -1.24 6.07 -25.10 -0.15 -1.39 16 7 C 0.11 1.28 2.76 -68.17 -0.19 1.09 16 8 H 0.10 0.86 6.29 -51.93 -0.33 0.53 16 9 C 0.50 8.28 6.58 -10.99 -0.07 8.21 16 10 O -0.52 -11.05 14.51 5.55 0.08 -10.97 16 11 N -0.59 -9.58 2.46 -175.06 -0.43 -10.01 16 12 C 0.25 5.39 5.16 -5.19 -0.03 5.36 16 13 C -0.53 -13.37 9.39 -34.44 -0.32 -13.70 16 14 H 0.06 1.47 7.81 -52.48 -0.41 1.06 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -24.59 13.29 55.43 0.74 -23.85 16 17 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 C 0.11 1.26 4.99 -4.04 -0.02 1.24 16 22 C -0.05 -0.45 5.90 -29.52 -0.17 -0.63 16 23 C 0.22 2.28 15.43 -20.77 -0.32 1.96 16 24 N -0.44 -5.91 18.53 42.14 0.78 -5.13 16 25 H 0.07 1.09 7.46 -51.93 -0.39 0.70 16 26 H 0.07 0.87 7.92 -51.93 -0.41 0.45 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.13 7.90 -51.93 -0.41 0.72 16 31 H 0.10 0.69 7.00 -51.93 -0.36 0.33 16 32 H 0.05 1.19 7.42 -51.93 -0.39 0.80 16 33 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 34 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.10 1.21 8.07 -51.93 -0.42 0.79 16 36 H 0.08 0.67 5.09 -51.93 -0.26 0.40 16 37 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.11 0.71 7.16 -51.93 -0.37 0.34 16 LS Contribution 327.51 15.07 4.94 4.94 Total: -1.00 -33.97 327.51 -5.41 -39.38 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -5.00 Total: -2.85 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: -1.07 Total: 11.28 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.56 Total: -47.76 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: 0.18 Total: -20.48 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.97 -5.41 -39.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331109763.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.034 kcal (2) G-P(sol) polarization free energy of solvation -33.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds