Wall clock time and date at job start Tue Mar 31 2020 01:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34421 * 124.34848 * 2 1 4 4 O 1.21276 * 124.94036 * 359.57363 * 3 2 1 5 5 C 1.51280 * 110.11344 * 179.56950 * 3 2 1 6 6 C 1.54626 * 104.19639 * 343.74932 * 5 3 2 7 7 C 1.46756 * 124.34858 * 179.97438 * 2 1 3 8 8 H 1.08999 * 110.32171 * 78.00453 * 7 2 1 9 9 C 1.50694 * 110.25066 * 316.03848 * 7 2 1 10 10 O 1.21290 * 119.99969 * 343.95295 * 9 7 2 11 11 N 1.34781 * 120.00287 * 163.95024 * 9 7 2 12 12 C 1.46504 * 119.99832 * 179.97438 * 11 9 7 13 13 C 1.50695 * 109.47420 * 270.00196 * 12 11 9 14 14 H 1.08004 * 119.99994 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00109 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99647 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99790 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47309 * 89.99865 * 17 15 13 19 19 H 1.48507 * 109.46782 * 209.99997 * 17 15 13 20 20 H 1.48497 * 109.47264 * 329.99637 * 17 15 13 21 21 C 1.46499 * 119.99786 * 0.02562 * 11 9 7 22 22 C 1.53000 * 109.46840 * 269.99584 * 21 11 9 23 23 C 1.47201 * 109.46973 * 180.02562 * 22 21 11 24 24 N 6.55816 * 113.30797 * 211.86747 * 2 1 3 25 25 H 1.09002 * 109.46927 * 270.02066 * 1 2 3 26 26 H 1.08997 * 109.46878 * 30.02195 * 1 2 3 27 27 H 1.09004 * 109.47138 * 150.02107 * 1 2 3 28 28 H 1.08998 * 110.48282 * 225.07051 * 5 3 2 29 29 H 1.09004 * 110.59251 * 102.48541 * 5 3 2 30 30 H 1.08996 * 110.97402 * 266.67455 * 6 5 3 31 31 H 1.09004 * 110.99741 * 142.93240 * 6 5 3 32 32 H 1.08999 * 109.47380 * 30.00717 * 12 11 9 33 33 H 1.09001 * 109.46721 * 150.00109 * 12 11 9 34 34 H 0.97006 * 119.99665 * 180.02562 * 16 15 13 35 35 H 1.09001 * 109.46813 * 149.99858 * 21 11 9 36 36 H 1.08992 * 109.47397 * 29.99919 * 21 11 9 37 37 H 1.09002 * 109.47398 * 300.00326 * 22 21 11 38 38 H 1.09001 * 109.47194 * 60.00507 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2235 1.1098 0.0000 4 8 1.7946 2.2442 -0.0074 5 6 3.6898 0.7378 0.0107 6 6 3.7009 -0.7486 0.4365 7 6 2.2931 -1.2116 0.0005 8 1 2.3313 -1.6445 -0.9991 9 6 1.7472 -2.2160 0.9824 10 8 0.9519 -1.8663 1.8288 11 7 2.1426 -3.5030 0.9201 12 6 1.6122 -4.4793 1.8751 13 6 2.5020 -4.5278 3.0904 14 1 3.3750 -3.8944 3.1461 15 6 2.2015 -5.3807 4.1312 16 7 1.1382 -6.1516 4.0635 17 14 3.3041 -5.4402 5.6379 18 1 2.8285 -4.4516 6.6387 19 1 3.2619 -6.8021 6.2287 20 1 4.6984 -5.1145 5.2442 21 6 3.1036 -3.9254 -0.1018 22 6 2.3508 -4.3629 -1.3599 23 6 3.3163 -4.7878 -2.3866 24 7 4.0599 -5.1151 -3.1799 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8902 -0.5135 28 1 4.2323 1.3461 0.7344 29 1 4.1218 0.8532 -0.9834 30 1 3.8264 -0.8445 1.5150 31 1 4.4755 -1.3014 -0.0950 32 1 0.6056 -4.1861 2.1732 33 1 1.5807 -5.4638 1.4084 34 1 0.9266 -6.7514 4.7959 35 1 3.6937 -4.7598 0.2771 36 1 3.7647 -3.0936 -0.3448 37 1 1.6896 -5.1947 -1.1169 38 1 1.7607 -3.5284 -1.7389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331109763.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:53 Heat of formation + Delta-G solvation = -58.711035 kcal Electronic energy + Delta-G solvation = -22195.672010 eV Core-core repulsion = 18844.655945 eV Total energy + Delta-G solvation = -3351.016065 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.94729 -40.17376 -37.99404 -37.29050 -36.67212 -34.83599 -33.67689 -32.15108 -30.26200 -28.32297 -27.59033 -25.30032 -24.89579 -23.07537 -20.92056 -19.88766 -18.74496 -18.51475 -18.29862 -17.66530 -17.08751 -16.86912 -16.38749 -15.79559 -15.72727 -15.52593 -14.88334 -14.79810 -14.52216 -14.33535 -14.22824 -13.75106 -13.66585 -13.42304 -13.36152 -13.18253 -13.01633 -12.93760 -12.67180 -12.64061 -12.52060 -12.14236 -12.09605 -11.73703 -11.63990 -10.97893 -10.74013 -10.57080 -9.69626 -9.45385 -8.16418 -6.27616 1.41399 1.44133 1.48258 1.52016 1.64290 1.85137 1.90891 1.96347 2.34221 2.46456 3.08384 3.17088 3.33102 3.49157 3.73723 3.94923 4.01577 4.15715 4.19873 4.37393 4.41924 4.56655 4.65961 4.85068 4.88190 4.93211 4.97114 5.06560 5.13113 5.15256 5.36901 5.40444 5.62496 5.87841 6.07746 6.14770 6.66294 6.72171 6.83451 7.09245 7.34309 7.48731 8.90281 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.012749 B = 0.006195 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.662403 B = 4518.330038 C = 5774.970801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.604 5.604 3 C 0.505 3.495 4 O -0.583 6.583 5 C -0.139 4.139 6 C -0.119 4.119 7 C 0.113 3.887 8 H 0.147 0.853 9 C 0.497 3.503 10 O -0.576 6.576 11 N -0.589 5.589 12 C 0.260 3.740 13 C -0.536 4.536 14 H 0.058 0.942 15 C 0.011 3.989 16 N -0.926 5.926 17 Si 0.953 3.047 18 H -0.287 1.287 19 H -0.282 1.282 20 H -0.260 1.260 21 C 0.106 3.894 22 C -0.041 4.041 23 C 0.246 3.754 24 N -0.488 5.488 25 H 0.038 0.962 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.112 0.888 29 H 0.144 0.856 30 H 0.070 0.930 31 H 0.144 0.856 32 H 0.003 0.997 33 H 0.038 0.962 34 H 0.264 0.736 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.520 6.626 -12.376 15.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.337 5.337 3 C 0.295 3.705 4 O -0.464 6.464 5 C -0.179 4.179 6 C -0.157 4.157 7 C 0.006 3.994 8 H 0.164 0.836 9 C 0.284 3.716 10 O -0.455 6.455 11 N -0.319 5.319 12 C 0.139 3.861 13 C -0.575 4.575 14 H 0.076 0.924 15 C -0.188 4.188 16 N -0.567 5.567 17 Si 0.779 3.221 18 H -0.214 1.214 19 H -0.207 1.207 20 H -0.184 1.184 21 C -0.018 4.018 22 C -0.082 4.082 23 C -0.071 4.071 24 N -0.166 5.166 25 H 0.057 0.943 26 H 0.094 0.906 27 H 0.105 0.895 28 H 0.130 0.870 29 H 0.161 0.839 30 H 0.088 0.912 31 H 0.162 0.838 32 H 0.021 0.979 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.796 6.732 -13.023 15.764 hybrid contribution -0.517 -0.338 1.773 1.878 sum 5.279 6.394 -11.250 13.975 Atomic orbital electron populations 1.21506 0.77907 1.03149 1.01489 1.48070 1.07011 1.06624 1.71968 1.21682 0.91281 0.83512 0.74009 1.90677 1.79987 1.22656 1.53055 1.22402 0.91474 0.96865 1.07131 1.22766 0.93877 0.95745 1.03335 1.22059 0.92160 0.84789 1.00406 0.83580 1.21177 0.81585 0.83422 0.85374 1.90714 1.36539 1.79125 1.39122 1.48033 1.43984 1.08027 1.31864 1.18821 0.93400 0.86973 0.86890 1.21769 1.10738 1.21756 1.03214 0.92378 1.25685 0.96567 0.95375 1.01148 1.70017 1.27294 1.25676 1.33676 0.85633 0.79784 0.77097 0.79623 1.21364 1.20733 1.18380 1.21701 0.90912 1.03331 0.85873 1.19868 0.94104 1.05366 0.88873 1.29073 0.93121 0.91781 0.93150 1.81261 1.11720 1.10982 1.12664 0.94321 0.90640 0.89536 0.87000 0.83858 0.91151 0.83782 0.97912 0.94420 0.92709 0.89191 0.86855 0.86187 0.84531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.70 9.56 127.77 1.22 3.92 16 2 N -0.60 -15.62 3.01 -823.09 -2.48 -18.09 16 3 C 0.51 13.57 8.02 87.90 0.71 14.28 16 4 O -0.58 -20.61 17.59 -3.02 -0.05 -20.67 16 5 C -0.14 -2.20 6.86 30.59 0.21 -1.99 16 6 C -0.12 -1.88 6.07 31.65 0.19 -1.68 16 7 C 0.11 2.31 2.76 44.70 0.12 2.43 16 8 H 0.15 1.65 6.29 -2.39 -0.02 1.64 16 9 C 0.50 15.79 6.58 87.65 0.58 16.37 16 10 O -0.58 -25.28 14.51 -3.06 -0.04 -25.33 16 11 N -0.59 -18.14 2.46 -826.16 -2.03 -20.17 16 12 C 0.26 11.54 5.16 85.63 0.44 11.98 16 13 C -0.54 -27.09 9.39 25.60 0.24 -26.85 16 14 H 0.06 2.88 7.81 -2.91 -0.02 2.85 16 15 C 0.01 0.60 5.46 84.66 0.46 1.07 16 16 N -0.93 -52.05 13.29 21.45 0.28 -51.77 16 17 Si 0.95 42.07 29.54 68.60 2.03 44.10 16 18 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 20 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 21 C 0.11 2.00 4.99 86.38 0.43 2.43 16 22 C -0.04 -0.55 5.90 28.79 0.17 -0.38 16 23 C 0.25 4.31 15.43 89.45 1.38 5.69 16 24 N -0.49 -11.73 18.53 20.00 0.37 -11.36 16 25 H 0.04 1.26 7.46 -2.39 -0.02 1.24 16 26 H 0.07 1.88 7.92 -2.39 -0.02 1.86 16 27 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 28 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.50 7.90 -2.39 -0.02 1.48 16 31 H 0.14 1.01 7.00 -2.38 -0.02 1.00 16 32 H 0.00 0.15 7.42 -2.39 -0.02 0.13 16 33 H 0.04 1.66 8.07 -2.39 -0.02 1.64 16 34 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 35 H 0.09 1.93 8.07 -2.39 -0.02 1.91 16 36 H 0.11 1.33 5.09 -2.39 -0.01 1.31 16 37 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.14 1.09 7.16 -2.39 -0.02 1.07 16 Total: -1.00 -79.09 327.51 5.31 -73.78 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: 1.08 Total: 2.26 kcal Atomic # 6 Polarization: 21.10 SS G_CDS: 6.15 Total: 27.26 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -3.85 Total: -101.39 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -0.10 Total: -45.99 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -79.09 5.31 -73.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331109763.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.066 kcal (2) G-P(sol) polarization free energy of solvation -79.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds