Wall clock time and date at job start Tue Mar 31 2020 01:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34953 * 126.03360 * 2 1 4 4 C 1.35318 * 107.74381 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.03905 * 179.74188 * 4 3 2 6 6 C 1.53002 * 109.46979 * 89.99947 * 5 4 3 7 7 H 1.09004 * 109.47237 * 54.99884 * 6 5 4 8 8 O 1.42900 * 109.47352 * 294.99847 * 6 5 4 9 9 C 1.50697 * 109.47071 * 174.99794 * 6 5 4 10 10 O 1.21294 * 119.99848 * 114.99572 * 9 6 5 11 11 N 1.34777 * 120.00082 * 295.00473 * 9 6 5 12 12 C 1.37101 * 119.99908 * 179.97438 * 11 9 6 13 13 H 1.08002 * 119.99993 * 222.95486 * 12 11 9 14 14 C 1.38952 * 119.99691 * 42.95870 * 12 11 9 15 15 N 1.31411 * 120.00307 * 19.07973 * 14 12 11 16 16 Si 1.86805 * 119.99486 * 199.08137 * 14 12 11 17 17 H 1.48503 * 109.47308 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47271 * 119.99969 * 16 14 12 19 19 H 1.48503 * 109.47168 * 240.00065 * 16 14 12 20 20 C 1.46498 * 120.00100 * 359.97438 * 11 9 6 21 21 C 1.52994 * 117.50036 * 191.82025 * 20 11 9 22 22 C 1.53004 * 117.49634 * 123.15762 * 20 11 9 23 23 C 1.39868 * 107.91950 * 0.02562 * 4 3 2 24 24 N 1.30840 * 108.20654 * 0.02562 * 23 4 3 25 25 H 1.09004 * 109.47746 * 89.99546 * 1 2 3 26 26 H 1.08996 * 109.46913 * 209.99359 * 1 2 3 27 27 H 1.09002 * 109.47248 * 329.99221 * 1 2 3 28 28 H 1.07994 * 126.12792 * 0.05223 * 3 2 1 29 29 H 1.08996 * 109.47036 * 210.00017 * 5 4 3 30 30 H 1.08998 * 109.47106 * 330.00129 * 5 4 3 31 31 H 0.96694 * 114.00114 * 300.00453 * 8 6 5 32 32 H 0.96998 * 119.99297 * 174.96187 * 15 14 12 33 33 H 1.09004 * 115.54921 * 337.49285 * 20 11 9 34 34 H 1.09001 * 117.49606 * 359.97438 * 21 20 11 35 35 H 1.09003 * 117.50055 * 145.02349 * 21 20 11 36 36 H 1.09001 * 117.49429 * 214.97824 * 22 20 11 37 37 H 1.08998 * 117.50105 * 359.97438 * 22 20 11 38 38 H 1.07998 * 125.89842 * 179.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 -0.0006 5 6 4.7680 1.5454 -0.0063 6 6 5.1848 1.8486 1.4343 7 1 5.3235 0.9135 1.9769 8 8 4.1668 2.6227 2.0719 9 6 6.4771 2.6238 1.4307 10 8 6.5013 3.7643 1.8429 11 7 7.6059 2.0498 0.9694 12 6 8.7815 2.7552 0.9657 13 1 9.4373 2.7074 0.1089 14 6 9.1293 3.5316 2.0644 15 7 8.5597 3.3152 3.2287 16 14 10.4066 4.8831 1.8861 17 1 10.8935 4.9222 0.4838 18 1 9.7957 6.1907 2.2352 19 1 11.5466 4.6102 2.7979 20 6 7.5768 0.6722 0.4720 21 6 8.9195 -0.0176 0.2231 22 6 8.0566 0.4279 -0.9602 23 6 3.5347 -0.7320 -0.0015 24 7 2.2892 -1.1327 -0.0021 25 1 -0.3635 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3634 0.8899 0.5140 28 1 1.9281 2.1193 0.0008 29 1 5.5811 1.0323 -0.5195 30 1 4.5432 2.4782 -0.5234 31 1 3.9898 3.4704 1.6417 32 1 8.8541 3.8068 4.0113 33 1 6.7554 0.0570 0.8394 34 1 9.8246 0.5537 0.4291 35 1 8.9815 -1.0868 0.4264 36 1 7.5512 -0.3483 -1.5347 37 1 8.3936 1.2923 -1.5324 38 1 4.4054 -1.3709 -0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331617536.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:18 Heat of formation + Delta-G solvation = 39.061390 kcal Electronic energy + Delta-G solvation = -22351.337960 eV Core-core repulsion = 19004.561625 eV Total energy + Delta-G solvation = -3346.776335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.07433 -38.94985 -36.62736 -35.41978 -33.46258 -32.69318 -31.74598 -30.78219 -28.77076 -26.65485 -24.87164 -23.18563 -21.70053 -21.19335 -20.89411 -20.01730 -19.49012 -17.24662 -16.56710 -16.07289 -15.58330 -15.27325 -14.83881 -14.55869 -14.33252 -14.08493 -13.69960 -13.26678 -13.08962 -12.98073 -12.61430 -12.52783 -12.28252 -11.87462 -11.40504 -11.22392 -10.91168 -10.86094 -10.79776 -10.58735 -10.40777 -10.12372 -10.01575 -9.93653 -9.70007 -9.30264 -8.69778 -8.26466 -7.78143 -7.00176 -6.09604 -3.84872 2.00820 2.59997 2.94897 3.30288 3.39585 3.42057 4.08148 4.26944 4.52617 4.78243 4.82436 4.95290 5.01485 5.03377 5.17007 5.25273 5.27277 5.51058 5.51888 5.61128 5.64642 5.76142 5.86435 5.97998 6.01472 6.14699 6.24416 6.38808 6.47179 6.55396 6.73969 6.80846 6.96922 7.10995 7.62977 7.79941 8.16769 8.30828 9.06048 9.16082 9.66583 10.27399 10.99007 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.026949 B = 0.005058 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.747293 B = 5534.892654 C = 6263.446905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.383 5.383 3 C 0.062 3.938 4 C -0.217 4.217 5 C -0.073 4.073 6 C 0.102 3.898 7 H 0.102 0.898 8 O -0.544 6.544 9 C 0.453 3.547 10 O -0.527 6.527 11 N -0.422 5.422 12 C -0.352 4.352 13 H 0.079 0.921 14 C 0.073 3.927 15 N -0.828 5.828 16 Si 0.911 3.089 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.286 1.286 20 C 0.072 3.928 21 C -0.178 4.178 22 C -0.206 4.206 23 C 0.052 3.948 24 N -0.305 5.305 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.170 0.830 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.371 0.629 32 H 0.264 0.736 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.155 -6.602 -7.743 15.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.166 5.166 3 C -0.083 4.083 4 C -0.228 4.228 5 C -0.112 4.112 6 C 0.039 3.961 7 H 0.119 0.881 8 O -0.348 6.348 9 C 0.240 3.760 10 O -0.405 6.405 11 N -0.144 5.144 12 C -0.479 4.479 13 H 0.096 0.904 14 C -0.138 4.138 15 N -0.461 5.461 16 Si 0.738 3.262 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.212 1.212 20 C -0.034 4.034 21 C -0.216 4.216 22 C -0.245 4.245 23 C -0.134 4.134 24 N -0.126 5.126 25 H 0.088 0.912 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.187 0.813 29 H 0.112 0.888 30 H 0.089 0.911 31 H 0.218 0.782 32 H 0.074 0.926 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -12.200 -7.393 -6.911 15.851 hybrid contribution 1.236 1.664 -0.279 2.091 sum -10.963 -5.730 -7.190 14.308 Atomic orbital electron populations 1.21772 0.74721 1.04271 1.02909 1.48364 1.06334 1.03985 1.57905 1.22274 0.90889 0.93075 1.02063 1.20004 0.94421 0.93749 1.14664 1.20722 0.94711 0.98718 0.97071 1.21778 0.87212 0.94502 0.92600 0.88064 1.86497 1.56261 1.34445 1.57554 1.20588 0.84497 0.87902 0.82972 1.90536 1.84618 1.18687 1.46637 1.42843 1.07278 1.07460 1.56802 1.18902 0.99456 1.27643 1.01859 0.90357 1.25235 0.96324 0.97911 0.94310 1.69851 1.39109 1.38377 0.98810 0.86179 0.79780 0.82104 0.78151 1.19577 1.20697 1.21219 1.21779 0.97646 0.87949 0.96041 1.23121 0.96994 0.99302 1.02136 1.23322 1.05853 1.03038 0.92297 1.23790 0.95074 0.94727 0.99818 1.77278 1.01754 1.08390 1.25209 0.91153 0.89611 0.89655 0.81254 0.88828 0.91132 0.78182 0.92609 0.87655 0.87504 0.89838 0.89687 0.88975 0.80196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.82 11.47 59.85 0.69 1.51 16 2 N -0.38 -4.85 4.01 -68.16 -0.27 -5.12 16 3 C 0.06 0.80 11.38 -17.22 -0.20 0.61 16 4 C -0.22 -3.11 5.13 -105.05 -0.54 -3.65 16 5 C -0.07 -1.13 5.06 -27.88 -0.14 -1.27 16 6 C 0.10 1.99 2.55 -27.88 -0.07 1.92 16 7 H 0.10 2.00 7.32 -51.93 -0.38 1.62 16 8 O -0.54 -10.62 12.72 -55.09 -0.70 -11.32 16 9 C 0.45 11.23 6.38 -10.99 -0.07 11.16 16 10 O -0.53 -15.37 13.99 -14.32 -0.20 -15.57 16 11 N -0.42 -10.21 2.86 -107.73 -0.31 -10.51 16 12 C -0.35 -9.42 7.70 -14.93 -0.12 -9.54 16 13 H 0.08 2.03 7.57 -52.49 -0.40 1.63 16 14 C 0.07 2.05 4.36 -17.47 -0.08 1.98 16 15 N -0.83 -24.76 11.68 55.50 0.65 -24.11 16 16 Si 0.91 21.84 29.60 -169.99 -5.03 16.81 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 C 0.07 1.37 4.40 -67.93 -0.30 1.07 16 21 C -0.18 -3.11 9.83 -26.69 -0.26 -3.37 16 22 C -0.21 -3.33 9.61 -26.69 -0.26 -3.59 16 23 C 0.05 0.73 11.96 -17.36 -0.21 0.52 16 24 N -0.30 -4.50 12.58 30.62 0.39 -4.12 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.17 1.73 8.06 -52.49 -0.42 1.30 16 29 H 0.09 1.43 5.14 -51.93 -0.27 1.16 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.37 6.33 8.79 45.56 0.40 6.73 16 32 H 0.26 7.56 8.32 -40.82 -0.34 7.22 16 33 H 0.11 1.78 6.13 -51.93 -0.32 1.46 16 34 H 0.11 2.11 6.97 -51.93 -0.36 1.75 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 38 H 0.18 2.09 8.06 -52.49 -0.42 1.66 16 LS Contribution 321.92 15.07 4.85 4.85 Total: -1.00 -35.80 321.92 -6.44 -42.24 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -4.26 Total: 9.52 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -1.55 Total: -2.65 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.45 Total: -43.86 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.90 Total: -26.90 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.80 -6.44 -42.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331617536.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.298 kcal (2) G-P(sol) polarization free energy of solvation -35.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds