Wall clock time and date at job start Tue Mar 31 2020 01:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34953 * 126.03360 * 2 1 4 4 C 1.35318 * 107.74381 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.03905 * 179.74188 * 4 3 2 6 6 C 1.53002 * 109.46979 * 89.99947 * 5 4 3 7 7 H 1.09004 * 109.47237 * 54.99884 * 6 5 4 8 8 O 1.42900 * 109.47352 * 294.99847 * 6 5 4 9 9 C 1.50697 * 109.47071 * 174.99794 * 6 5 4 10 10 O 1.21294 * 119.99848 * 114.99572 * 9 6 5 11 11 N 1.34777 * 120.00082 * 295.00473 * 9 6 5 12 12 C 1.37101 * 119.99908 * 179.97438 * 11 9 6 13 13 H 1.08002 * 119.99993 * 222.95486 * 12 11 9 14 14 C 1.38952 * 119.99691 * 42.95870 * 12 11 9 15 15 N 1.31411 * 120.00307 * 19.07973 * 14 12 11 16 16 Si 1.86805 * 119.99486 * 199.08137 * 14 12 11 17 17 H 1.48503 * 109.47308 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47271 * 119.99969 * 16 14 12 19 19 H 1.48503 * 109.47168 * 240.00065 * 16 14 12 20 20 C 1.46498 * 120.00100 * 359.97438 * 11 9 6 21 21 C 1.52994 * 117.50036 * 191.82025 * 20 11 9 22 22 C 1.53004 * 117.49634 * 123.15762 * 20 11 9 23 23 C 1.39868 * 107.91950 * 0.02562 * 4 3 2 24 24 N 1.30840 * 108.20654 * 0.02562 * 23 4 3 25 25 H 1.09004 * 109.47746 * 89.99546 * 1 2 3 26 26 H 1.08996 * 109.46913 * 209.99359 * 1 2 3 27 27 H 1.09002 * 109.47248 * 329.99221 * 1 2 3 28 28 H 1.07994 * 126.12792 * 0.05223 * 3 2 1 29 29 H 1.08996 * 109.47036 * 210.00017 * 5 4 3 30 30 H 1.08998 * 109.47106 * 330.00129 * 5 4 3 31 31 H 0.96694 * 114.00114 * 300.00453 * 8 6 5 32 32 H 0.96998 * 119.99297 * 174.96187 * 15 14 12 33 33 H 1.09004 * 115.54921 * 337.49285 * 20 11 9 34 34 H 1.09001 * 117.49606 * 359.97438 * 21 20 11 35 35 H 1.09003 * 117.50055 * 145.02349 * 21 20 11 36 36 H 1.09001 * 117.49429 * 214.97824 * 22 20 11 37 37 H 1.08998 * 117.50105 * 359.97438 * 22 20 11 38 38 H 1.07998 * 125.89842 * 179.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 -0.0006 5 6 4.7680 1.5454 -0.0063 6 6 5.1848 1.8486 1.4343 7 1 5.3235 0.9135 1.9769 8 8 4.1668 2.6227 2.0719 9 6 6.4771 2.6238 1.4307 10 8 6.5013 3.7643 1.8429 11 7 7.6059 2.0498 0.9694 12 6 8.7815 2.7552 0.9657 13 1 9.4373 2.7074 0.1089 14 6 9.1293 3.5316 2.0644 15 7 8.5597 3.3152 3.2287 16 14 10.4066 4.8831 1.8861 17 1 10.8935 4.9222 0.4838 18 1 9.7957 6.1907 2.2352 19 1 11.5466 4.6102 2.7979 20 6 7.5768 0.6722 0.4720 21 6 8.9195 -0.0176 0.2231 22 6 8.0566 0.4279 -0.9602 23 6 3.5347 -0.7320 -0.0015 24 7 2.2892 -1.1327 -0.0021 25 1 -0.3635 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3634 0.8899 0.5140 28 1 1.9281 2.1193 0.0008 29 1 5.5811 1.0323 -0.5195 30 1 4.5432 2.4782 -0.5234 31 1 3.9898 3.4704 1.6417 32 1 8.8541 3.8068 4.0113 33 1 6.7554 0.0570 0.8394 34 1 9.8246 0.5537 0.4291 35 1 8.9815 -1.0868 0.4264 36 1 7.5512 -0.3483 -1.5347 37 1 8.3936 1.2923 -1.5324 38 1 4.4054 -1.3709 -0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331617536.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:18 Heat of formation + Delta-G solvation = 13.425069 kcal Electronic energy + Delta-G solvation = -22352.449634 eV Core-core repulsion = 19004.561625 eV Total energy + Delta-G solvation = -3347.888009 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.07675 -40.66207 -38.17938 -37.10614 -34.65804 -34.44424 -33.13692 -32.40340 -29.98217 -27.82639 -26.52527 -24.63676 -23.06976 -22.71026 -21.89332 -21.30501 -21.06494 -18.93262 -17.88625 -17.56740 -17.00193 -16.75072 -16.41920 -16.00511 -15.53725 -15.45497 -15.25710 -14.69274 -14.60371 -14.13298 -13.80932 -13.61537 -13.44267 -13.21138 -13.09344 -12.79600 -12.72528 -12.49409 -12.40631 -12.16553 -11.99109 -11.64926 -11.51613 -11.43258 -11.11760 -10.66873 -10.26350 -9.83359 -9.16309 -8.89576 -8.18106 -5.95127 1.04021 1.36847 1.44135 1.52152 1.78048 1.88115 2.25091 2.42698 3.08072 3.16671 3.40678 3.57751 3.72601 4.04913 4.06294 4.19655 4.28849 4.30217 4.33921 4.42172 4.48703 4.51739 4.65690 4.72543 4.81943 4.97695 4.98310 5.10717 5.15588 5.34554 5.36701 5.51679 5.55932 5.79020 6.21064 6.22614 6.76193 6.81330 7.06096 7.23461 7.72495 8.36593 8.90362 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.026949 B = 0.005058 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.747293 B = 5534.892654 C = 6263.446905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.384 5.384 3 C 0.067 3.933 4 C -0.239 4.239 5 C -0.052 4.052 6 C 0.118 3.882 7 H 0.099 0.901 8 O -0.554 6.554 9 C 0.438 3.562 10 O -0.585 6.585 11 N -0.435 5.435 12 C -0.355 4.355 13 H 0.081 0.919 14 C 0.020 3.980 15 N -0.872 5.872 16 Si 0.968 3.032 17 H -0.255 1.255 18 H -0.296 1.296 19 H -0.275 1.275 20 C 0.044 3.956 21 C -0.179 4.179 22 C -0.174 4.174 23 C 0.045 3.955 24 N -0.334 5.334 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.108 0.892 28 H 0.195 0.805 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.381 0.619 32 H 0.258 0.742 33 H 0.129 0.871 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.127 0.873 37 H 0.077 0.923 38 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.102 -7.871 -9.516 17.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.166 5.166 3 C -0.080 4.080 4 C -0.250 4.250 5 C -0.091 4.091 6 C 0.055 3.945 7 H 0.116 0.884 8 O -0.359 6.359 9 C 0.227 3.773 10 O -0.466 6.466 11 N -0.156 5.156 12 C -0.482 4.482 13 H 0.099 0.901 14 C -0.186 4.186 15 N -0.508 5.508 16 Si 0.793 3.207 17 H -0.179 1.179 18 H -0.223 1.223 19 H -0.201 1.201 20 C -0.061 4.061 21 C -0.217 4.217 22 C -0.213 4.213 23 C -0.140 4.140 24 N -0.156 5.156 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.127 0.873 28 H 0.212 0.788 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.229 0.771 32 H 0.067 0.933 33 H 0.146 0.854 34 H 0.096 0.904 35 H 0.134 0.866 36 H 0.145 0.855 37 H 0.095 0.905 38 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -13.143 -8.718 -8.729 18.027 hybrid contribution 1.445 2.010 0.207 2.484 sum -11.698 -6.709 -8.522 15.953 Atomic orbital electron populations 1.22147 0.72253 1.05645 1.04522 1.48747 1.07814 1.03362 1.56672 1.22706 0.90719 0.94247 1.00333 1.19910 0.94398 0.93779 1.16942 1.20440 0.95540 0.99218 0.93878 1.21643 0.84518 0.93099 0.95221 0.88374 1.86455 1.55858 1.35170 1.58403 1.21590 0.86237 0.87761 0.81699 1.90487 1.85858 1.21248 1.49041 1.43041 1.06452 1.09561 1.56535 1.19170 0.99955 1.27664 1.01428 0.90101 1.26051 0.98478 0.99913 0.94161 1.69972 1.41466 1.39880 0.99445 0.85285 0.77803 0.78584 0.78993 1.17870 1.22329 1.20116 1.22082 0.99622 0.85767 0.98645 1.23176 0.94968 1.00611 1.02896 1.23337 1.03936 1.03164 0.90835 1.24130 0.95594 0.94936 0.99327 1.77232 1.02305 1.09749 1.26311 0.89395 0.89280 0.87329 0.78824 0.88374 0.90875 0.77059 0.93320 0.85383 0.90368 0.86589 0.85453 0.90486 0.78456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.21 11.47 127.77 1.47 2.68 16 2 N -0.38 -8.74 4.01 -369.56 -1.48 -10.22 16 3 C 0.07 1.54 11.38 83.54 0.95 2.49 16 4 C -0.24 -6.30 5.13 -20.14 -0.10 -6.41 16 5 C -0.05 -1.51 5.06 29.85 0.15 -1.36 16 6 C 0.12 4.53 2.55 29.85 0.08 4.61 16 7 H 0.10 3.81 7.32 -2.39 -0.02 3.79 16 8 O -0.55 -21.43 12.72 -129.99 -1.65 -23.08 16 9 C 0.44 22.01 6.38 87.66 0.56 22.57 16 10 O -0.58 -35.19 13.99 15.92 0.22 -34.96 16 11 N -0.43 -21.09 2.86 -613.13 -1.76 -22.85 16 12 C -0.35 -19.22 7.70 84.04 0.65 -18.58 16 13 H 0.08 4.22 7.57 -2.91 -0.02 4.20 16 14 C 0.02 1.14 4.36 84.93 0.37 1.51 16 15 N -0.87 -53.95 11.68 21.66 0.25 -53.69 16 16 Si 0.97 45.81 29.60 68.60 2.03 47.84 16 17 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 18 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 20 C 0.04 1.59 4.40 44.99 0.20 1.79 16 21 C -0.18 -5.88 9.83 30.62 0.30 -5.58 16 22 C -0.17 -5.10 9.61 30.62 0.29 -4.81 16 23 C 0.05 1.18 11.96 85.24 1.02 2.19 16 24 N -0.33 -9.18 12.58 -57.02 -0.72 -9.90 16 25 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.19 3.35 8.06 -2.91 -0.02 3.32 16 29 H 0.10 2.75 5.14 -2.39 -0.01 2.74 16 30 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.38 12.93 8.79 -74.06 -0.65 12.28 16 32 H 0.26 15.42 8.32 -92.71 -0.77 14.65 16 33 H 0.13 4.03 6.13 -2.38 -0.01 4.02 16 34 H 0.08 3.05 6.97 -2.39 -0.02 3.03 16 35 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 36 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.20 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -80.04 321.92 3.26 -76.78 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.43 Total: 28.97 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 5.93 Total: 1.11 kcal Atomic # 7 Polarization: -92.96 SS G_CDS: -3.70 Total: -96.66 kcal Atomic # 8 Polarization: -56.62 SS G_CDS: -1.43 Total: -58.05 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -80.04 3.26 -76.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331617536.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.210 kcal (2) G-P(sol) polarization free energy of solvation -80.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds