Wall clock time and date at job start Tue Mar 31 2020 00:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47332 * 2 1 4 4 C 1.36975 * 119.99895 * 273.98895 * 3 2 1 5 5 H 1.08003 * 120.00179 * 185.14365 * 4 3 2 6 6 C 1.38977 * 120.00188 * 5.14311 * 4 3 2 7 7 N 1.31417 * 119.99957 * 16.21997 * 6 4 3 8 8 Si 1.86807 * 120.00265 * 196.21872 * 6 4 3 9 9 H 1.48502 * 109.46543 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47029 * 119.99740 * 8 6 4 11 11 H 1.48498 * 109.47036 * 240.00342 * 8 6 4 12 12 C 1.34772 * 119.99575 * 93.98364 * 3 2 1 13 13 O 1.21630 * 119.99576 * 184.79486 * 12 3 2 14 14 C 1.47350 * 120.00833 * 4.79778 * 12 3 2 15 15 C 1.38115 * 126.42046 * 50.30471 * 14 12 3 16 16 N 1.34281 * 107.40328 * 179.70606 * 15 14 12 17 17 H 0.97001 * 125.75121 * 180.27866 * 16 15 14 18 18 N 1.39933 * 108.50134 * 0.26785 * 16 15 14 19 19 C 1.30450 * 108.91035 * 359.97438 * 18 16 15 20 20 C 1.50695 * 125.98357 * 180.02562 * 19 18 16 21 21 H 1.09003 * 110.80703 * 183.65717 * 20 19 18 22 22 C 1.54810 * 110.91051 * 60.02407 * 20 19 18 23 23 C 1.54098 * 104.19210 * 220.91998 * 22 20 19 24 24 O 1.43745 * 107.29085 * 357.97044 * 23 22 20 25 25 C 1.44383 * 106.97827 * 26.51466 * 24 23 22 26 26 H 1.09002 * 109.46915 * 179.97438 * 1 2 3 27 27 H 1.08987 * 109.47493 * 300.00216 * 1 2 3 28 28 H 1.09000 * 109.46667 * 60.00592 * 1 2 3 29 29 H 1.09004 * 109.47402 * 239.99932 * 2 1 3 30 30 H 1.09004 * 109.47009 * 119.99773 * 2 1 3 31 31 H 0.96995 * 119.99716 * 180.02562 * 7 6 4 32 32 H 1.07999 * 126.29188 * 359.97346 * 15 14 12 33 33 H 1.09004 * 110.48644 * 339.59795 * 22 20 19 34 34 H 1.08994 * 110.48733 * 102.24217 * 22 20 19 35 35 H 1.09003 * 109.87653 * 117.39082 * 23 22 20 36 36 H 1.08998 * 109.88101 * 238.39384 * 23 22 20 37 37 H 1.08996 * 110.61962 * 201.43866 * 25 24 23 38 38 H 1.08997 * 110.61681 * 78.43807 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1689 2.0544 -1.1834 5 1 2.6066 3.0418 -1.1911 6 6 1.7584 1.4670 -2.3741 7 7 0.9507 0.4306 -2.3513 8 14 2.3547 2.1506 -4.0072 9 1 3.2479 3.3112 -3.7613 10 1 3.1013 1.0977 -4.7415 11 1 1.1887 2.5866 -4.8167 12 6 2.3195 1.9894 1.1644 13 8 2.6412 3.1624 1.1723 14 6 2.2590 1.2336 2.4278 15 6 2.8452 0.0085 2.6793 16 7 2.5545 -0.3230 3.9477 17 1 2.8385 -1.1319 4.4014 18 7 1.7729 0.6953 4.5048 19 6 1.5884 1.6250 3.6085 20 6 0.8027 2.8966 3.8006 21 1 0.7541 3.4656 2.8722 22 6 1.4056 3.7515 4.9417 23 6 0.1770 4.2871 5.7021 24 8 -0.9920 3.8139 5.0123 25 6 -0.6187 2.5926 4.3388 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8898 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.6645 0.0204 -3.1824 32 1 3.4331 -0.5734 1.9850 33 1 2.0205 3.1343 5.5968 34 1 1.9903 4.5756 4.5329 35 1 0.1813 3.9110 6.7251 36 1 0.1908 5.3770 5.7080 37 1 -1.3035 2.3826 3.5172 38 1 -0.5931 1.7594 5.0411 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332384569.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:36 Heat of formation + Delta-G solvation = 14.680925 kcal Electronic energy + Delta-G solvation = -22629.379997 eV Core-core repulsion = 19281.546446 eV Total energy + Delta-G solvation = -3347.833551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.08730 -38.94360 -38.09320 -35.06441 -33.24178 -31.81467 -30.37466 -29.77373 -29.29293 -28.64982 -25.03387 -23.26951 -22.57413 -21.94250 -21.48933 -19.64691 -18.99405 -17.39119 -16.60962 -16.23788 -15.82963 -15.66233 -14.91458 -14.48850 -14.46811 -13.95537 -13.73232 -13.32563 -13.13286 -12.78999 -12.68026 -12.49972 -11.73679 -11.63209 -11.35974 -11.25730 -11.18911 -11.07781 -10.79475 -10.61545 -10.37657 -10.25316 -10.13460 -9.87379 -9.55613 -9.11513 -8.86181 -8.51158 -8.12547 -7.69812 -6.26076 -3.79212 2.03447 2.72907 3.01039 3.15816 3.25305 3.32785 4.02634 4.07987 4.16106 4.73208 4.86004 4.97077 5.06716 5.15218 5.19639 5.29776 5.33786 5.49885 5.79217 5.83726 5.94049 5.98633 6.00694 6.12085 6.20063 6.28957 6.44358 6.68864 6.77789 6.83551 6.91551 6.98933 7.35623 7.44064 7.52484 7.86890 7.91441 8.10789 8.54765 9.19290 9.45437 10.02696 10.64852 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021674 B = 0.005533 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.554400 B = 5059.059736 C = 5490.428570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.122 3.878 3 N -0.435 5.435 4 C -0.292 4.292 5 H 0.106 0.894 6 C 0.022 3.978 7 N -0.872 5.872 8 Si 0.926 3.074 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.282 1.282 12 C 0.508 3.492 13 O -0.591 6.591 14 C -0.229 4.229 15 C 0.076 3.924 16 N -0.471 5.471 17 H 0.437 0.563 18 N -0.304 5.304 19 C 0.124 3.876 20 C -0.039 4.039 21 H 0.114 0.886 22 C -0.142 4.142 23 C 0.050 3.950 24 O -0.379 6.379 25 C 0.058 3.942 26 H 0.030 0.970 27 H 0.014 0.986 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.033 0.967 31 H 0.264 0.736 32 H 0.182 0.818 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.667 -3.415 10.301 10.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.001 4.001 3 N -0.152 5.152 4 C -0.419 4.419 5 H 0.123 0.877 6 C -0.179 4.179 7 N -0.513 5.513 8 Si 0.753 3.247 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.209 1.209 12 C 0.296 3.704 13 O -0.476 6.476 14 C -0.244 4.244 15 C -0.074 4.074 16 N -0.177 5.177 17 H 0.281 0.719 18 N -0.127 5.127 19 C -0.043 4.043 20 C -0.060 4.060 21 H 0.132 0.868 22 C -0.181 4.181 23 C -0.027 4.027 24 O -0.298 6.298 25 C -0.019 4.019 26 H 0.049 0.951 27 H 0.033 0.967 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.199 0.801 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.290 -3.221 11.284 11.738 hybrid contribution 0.820 -0.431 -1.488 1.753 sum 1.110 -3.652 9.796 10.513 Atomic orbital electron populations 1.22235 0.96565 0.99354 1.01934 1.21655 0.95038 0.83378 1.00022 1.43766 1.54794 1.11940 1.04739 1.19867 1.37263 1.02464 0.82347 0.87657 1.25262 0.95950 0.97024 0.99678 1.70195 1.30647 1.23401 1.27102 0.85852 0.78710 0.78849 0.81289 1.19296 1.20737 1.20866 1.16932 0.85176 0.86411 0.81889 1.90598 1.54513 1.16208 1.86315 1.20585 1.08967 0.97185 0.97618 1.23052 1.00525 0.96528 0.87295 1.45894 1.42350 1.19386 1.10101 0.71918 1.76869 1.15292 0.98801 1.21748 1.21769 0.97063 0.94894 0.90581 1.21178 0.92966 0.90772 1.01092 0.86790 1.22957 0.98275 1.00145 0.96688 1.23142 0.84566 0.99570 0.95447 1.88843 1.33014 1.40218 1.67683 1.23628 0.94540 0.87459 0.96262 0.95128 0.96708 0.87963 0.88213 0.94878 0.92494 0.80126 0.90396 0.89818 0.92606 0.89911 0.88646 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 9.54 37.16 0.35 -2.74 16 2 C 0.12 2.68 5.30 -4.04 -0.02 2.65 16 3 N -0.44 -10.82 2.63 -116.05 -0.30 -11.12 16 4 C -0.29 -7.82 9.50 -14.98 -0.14 -7.96 16 5 H 0.11 3.00 7.24 -52.48 -0.38 2.62 16 6 C 0.02 0.55 5.18 -17.46 -0.09 0.46 16 7 N -0.87 -21.50 7.47 55.50 0.41 -21.09 16 8 Si 0.93 20.01 29.58 -169.99 -5.03 14.98 16 9 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 10 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 C 0.51 12.43 7.05 -12.56 -0.09 12.34 16 13 O -0.59 -16.36 16.14 5.25 0.08 -16.27 16 14 C -0.23 -4.57 5.19 -105.06 -0.54 -5.11 16 15 C 0.08 1.19 9.83 -16.53 -0.16 1.02 16 16 N -0.47 -6.37 7.29 30.87 0.22 -6.14 16 17 H 0.44 4.01 8.96 -182.72 -1.64 2.37 16 18 N -0.30 -4.96 12.29 33.90 0.42 -4.54 16 19 C 0.12 2.27 5.84 -82.01 -0.48 1.79 16 20 C -0.04 -0.68 3.54 -89.76 -0.32 -1.00 16 21 H 0.11 2.29 7.19 -51.93 -0.37 1.92 16 22 C -0.14 -2.08 6.59 -25.20 -0.17 -2.25 16 23 C 0.05 0.65 7.70 37.73 0.29 0.94 16 24 O -0.38 -6.00 11.52 -35.23 -0.41 -6.41 16 25 C 0.06 0.91 7.16 38.21 0.27 1.19 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.01 0.30 8.14 -51.94 -0.42 -0.12 16 28 H 0.10 2.51 5.82 -51.93 -0.30 2.21 16 29 H 0.10 2.33 6.03 -51.93 -0.31 2.01 16 30 H 0.03 0.62 4.29 -51.93 -0.22 0.40 16 31 H 0.26 6.20 8.31 -40.82 -0.34 5.87 16 32 H 0.18 2.37 7.46 -52.49 -0.39 1.98 16 33 H 0.08 1.11 7.78 -51.93 -0.40 0.71 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.07 1.00 7.84 -51.93 -0.41 0.60 16 LS Contribution 310.42 15.07 4.68 4.68 Total: -1.00 -30.93 310.42 -7.12 -38.05 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -6.10 Total: 6.53 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -1.09 Total: 1.33 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.75 Total: -42.89 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.32 Total: -22.68 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.03 Total: 14.98 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.93 -7.12 -38.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332384569.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.732 kcal (2) G-P(sol) polarization free energy of solvation -30.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds