Wall clock time and date at job start Tue Mar 31 2020 00:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47332 * 2 1 4 4 C 1.36975 * 119.99895 * 273.98895 * 3 2 1 5 5 H 1.08003 * 120.00179 * 185.14365 * 4 3 2 6 6 C 1.38977 * 120.00188 * 5.14311 * 4 3 2 7 7 N 1.31417 * 119.99957 * 16.21997 * 6 4 3 8 8 Si 1.86807 * 120.00265 * 196.21872 * 6 4 3 9 9 H 1.48502 * 109.46543 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47029 * 119.99740 * 8 6 4 11 11 H 1.48498 * 109.47036 * 240.00342 * 8 6 4 12 12 C 1.34772 * 119.99575 * 93.98364 * 3 2 1 13 13 O 1.21630 * 119.99576 * 184.79486 * 12 3 2 14 14 C 1.47350 * 120.00833 * 4.79778 * 12 3 2 15 15 C 1.38115 * 126.42046 * 50.30471 * 14 12 3 16 16 N 1.34281 * 107.40328 * 179.70606 * 15 14 12 17 17 H 0.97001 * 125.75121 * 180.27866 * 16 15 14 18 18 N 1.39933 * 108.50134 * 0.26785 * 16 15 14 19 19 C 1.30450 * 108.91035 * 359.97438 * 18 16 15 20 20 C 1.50695 * 125.98357 * 180.02562 * 19 18 16 21 21 H 1.09003 * 110.80703 * 183.65717 * 20 19 18 22 22 C 1.54810 * 110.91051 * 60.02407 * 20 19 18 23 23 C 1.54098 * 104.19210 * 220.91998 * 22 20 19 24 24 O 1.43745 * 107.29085 * 357.97044 * 23 22 20 25 25 C 1.44383 * 106.97827 * 26.51466 * 24 23 22 26 26 H 1.09002 * 109.46915 * 179.97438 * 1 2 3 27 27 H 1.08987 * 109.47493 * 300.00216 * 1 2 3 28 28 H 1.09000 * 109.46667 * 60.00592 * 1 2 3 29 29 H 1.09004 * 109.47402 * 239.99932 * 2 1 3 30 30 H 1.09004 * 109.47009 * 119.99773 * 2 1 3 31 31 H 0.96995 * 119.99716 * 180.02562 * 7 6 4 32 32 H 1.07999 * 126.29188 * 359.97346 * 15 14 12 33 33 H 1.09004 * 110.48644 * 339.59795 * 22 20 19 34 34 H 1.08994 * 110.48733 * 102.24217 * 22 20 19 35 35 H 1.09003 * 109.87653 * 117.39082 * 23 22 20 36 36 H 1.08998 * 109.88101 * 238.39384 * 23 22 20 37 37 H 1.08996 * 110.61962 * 201.43866 * 25 24 23 38 38 H 1.08997 * 110.61681 * 78.43807 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1689 2.0544 -1.1834 5 1 2.6066 3.0418 -1.1911 6 6 1.7584 1.4670 -2.3741 7 7 0.9507 0.4306 -2.3513 8 14 2.3547 2.1506 -4.0072 9 1 3.2479 3.3112 -3.7613 10 1 3.1013 1.0977 -4.7415 11 1 1.1887 2.5866 -4.8167 12 6 2.3195 1.9894 1.1644 13 8 2.6412 3.1624 1.1723 14 6 2.2590 1.2336 2.4278 15 6 2.8452 0.0085 2.6793 16 7 2.5545 -0.3230 3.9477 17 1 2.8385 -1.1319 4.4014 18 7 1.7729 0.6953 4.5048 19 6 1.5884 1.6250 3.6085 20 6 0.8027 2.8966 3.8006 21 1 0.7541 3.4656 2.8722 22 6 1.4056 3.7515 4.9417 23 6 0.1770 4.2871 5.7021 24 8 -0.9920 3.8139 5.0123 25 6 -0.6187 2.5926 4.3388 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8898 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.6645 0.0204 -3.1824 32 1 3.4331 -0.5734 1.9850 33 1 2.0205 3.1343 5.5968 34 1 1.9903 4.5756 4.5329 35 1 0.1813 3.9110 6.7251 36 1 0.1908 5.3770 5.7080 37 1 -1.3035 2.3826 3.5172 38 1 -0.5931 1.7594 5.0411 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332384569.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:36 Heat of formation + Delta-G solvation = -6.673791 kcal Electronic energy + Delta-G solvation = -22630.306006 eV Core-core repulsion = 19281.546446 eV Total energy + Delta-G solvation = -3348.759561 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.44471 -40.18028 -39.89032 -36.97988 -34.53267 -33.72224 -31.61478 -31.35920 -30.99439 -29.86051 -26.91751 -24.57785 -24.20129 -23.18453 -23.08087 -21.15043 -20.32883 -19.04553 -18.37214 -17.61900 -17.41103 -16.86574 -16.30832 -16.11182 -16.02801 -15.62359 -15.26061 -14.69224 -14.62034 -14.41568 -14.28284 -14.00730 -13.54555 -13.07081 -12.91264 -12.77533 -12.58970 -12.54119 -12.40663 -12.15420 -12.02857 -11.95864 -11.71859 -11.58082 -10.76398 -10.70716 -10.39494 -10.36515 -9.76278 -9.44785 -8.18242 -5.79803 0.72651 1.22380 1.44568 1.46856 1.59406 1.85820 2.25149 2.35515 2.90424 3.14590 3.23171 3.50634 3.62116 3.79485 4.03149 4.03281 4.18952 4.27475 4.37331 4.49035 4.62173 4.68614 4.73389 4.82007 4.85446 4.93922 5.01186 5.06282 5.13799 5.18807 5.37650 5.46834 5.60537 5.82452 6.05465 6.13615 6.34564 6.58447 6.65891 7.25080 7.56935 8.14052 8.70344 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021674 B = 0.005533 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.554400 B = 5059.059736 C = 5490.428570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.126 3.874 3 N -0.445 5.445 4 C -0.335 4.335 5 H 0.073 0.927 6 C -0.001 4.001 7 N -0.873 5.873 8 Si 0.985 3.015 9 H -0.280 1.280 10 H -0.266 1.266 11 H -0.278 1.278 12 C 0.503 3.497 13 O -0.639 6.639 14 C -0.277 4.277 15 C 0.105 3.895 16 N -0.441 5.441 17 H 0.461 0.539 18 N -0.300 5.300 19 C 0.117 3.883 20 C -0.047 4.047 21 H 0.073 0.927 22 C -0.136 4.136 23 C 0.050 3.950 24 O -0.395 6.395 25 C 0.068 3.932 26 H 0.056 0.944 27 H 0.009 0.991 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.271 0.729 32 H 0.213 0.787 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.876 -5.572 11.406 12.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.004 3.996 3 N -0.161 5.161 4 C -0.463 4.463 5 H 0.091 0.909 6 C -0.202 4.202 7 N -0.512 5.512 8 Si 0.810 3.190 9 H -0.205 1.205 10 H -0.191 1.191 11 H -0.203 1.203 12 C 0.293 3.707 13 O -0.528 6.528 14 C -0.291 4.291 15 C -0.047 4.047 16 N -0.150 5.150 17 H 0.310 0.690 18 N -0.124 5.124 19 C -0.049 4.049 20 C -0.068 4.068 21 H 0.092 0.908 22 C -0.174 4.174 23 C -0.027 4.027 24 O -0.314 6.314 25 C -0.010 4.010 26 H 0.075 0.925 27 H 0.028 0.972 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.230 0.770 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.481 -5.446 12.424 13.574 hybrid contribution 0.761 0.190 -1.804 1.967 sum 1.242 -5.256 10.620 11.915 Atomic orbital electron populations 1.22078 0.96522 1.00389 1.00121 1.21687 0.94978 0.81998 1.00937 1.43932 1.54871 1.12925 1.04421 1.19693 1.39975 1.02332 0.84283 0.90936 1.25866 0.95357 0.97286 1.01705 1.70285 1.29614 1.23217 1.28113 0.84992 0.78121 0.78184 0.77696 1.20530 1.19089 1.20342 1.17567 0.83785 0.86193 0.83169 1.90541 1.56371 1.18610 1.87311 1.20324 1.12950 0.99436 0.96433 1.23308 0.98500 0.94762 0.88114 1.45904 1.40362 1.19386 1.09322 0.69008 1.76841 1.15620 0.98853 1.21124 1.21780 0.97306 0.95488 0.90328 1.21097 0.94552 0.90892 1.00244 0.90834 1.22924 0.98964 0.99613 0.95928 1.23319 0.82768 1.00668 0.95903 1.88819 1.34230 1.40316 1.68025 1.23537 0.93265 0.87859 0.96299 0.92526 0.97225 0.90960 0.89537 0.91494 0.91858 0.77036 0.89668 0.90471 0.90220 0.88242 0.89199 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.69 9.54 71.98 0.69 -5.00 16 2 C 0.13 5.44 5.30 86.38 0.46 5.89 16 3 N -0.44 -22.70 2.63 -639.30 -1.68 -24.38 16 4 C -0.33 -18.72 9.50 84.07 0.80 -17.92 16 5 H 0.07 4.43 7.24 -2.91 -0.02 4.41 16 6 C 0.00 -0.04 5.18 84.93 0.44 0.40 16 7 N -0.87 -42.80 7.47 21.67 0.16 -42.64 16 8 Si 0.99 41.38 29.58 68.60 2.03 43.41 16 9 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 11 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 12 C 0.50 25.51 7.05 86.64 0.61 26.12 16 13 O -0.64 -37.64 16.14 -4.13 -0.07 -37.71 16 14 C -0.28 -10.92 5.19 -20.15 -0.10 -11.03 16 15 C 0.11 2.99 9.83 84.29 0.83 3.82 16 16 N -0.44 -10.27 7.29 -56.26 -0.41 -10.68 16 17 H 0.46 6.25 8.96 -213.43 -1.91 4.34 16 18 N -0.30 -9.05 12.29 -46.66 -0.57 -9.62 16 19 C 0.12 4.23 5.84 43.52 0.25 4.48 16 20 C -0.05 -1.66 3.54 -10.24 -0.04 -1.70 16 21 H 0.07 3.18 7.19 -2.39 -0.02 3.17 16 22 C -0.14 -3.94 6.59 31.58 0.21 -3.73 16 23 C 0.05 1.23 7.70 72.35 0.56 1.79 16 24 O -0.39 -12.23 11.52 -148.98 -1.72 -13.95 16 25 C 0.07 2.10 7.16 72.67 0.52 2.62 16 26 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.07 3.56 5.82 -2.39 -0.01 3.55 16 29 H 0.09 3.95 6.03 -2.38 -0.01 3.94 16 30 H 0.07 2.37 4.29 -2.38 -0.01 2.36 16 31 H 0.27 12.44 8.31 -92.71 -0.77 11.67 16 32 H 0.21 4.66 7.46 -2.91 -0.02 4.64 16 33 H 0.08 2.32 7.78 -2.38 -0.02 2.31 16 34 H 0.08 2.29 8.14 -2.39 -0.02 2.28 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 38 H 0.08 2.25 7.84 -2.39 -0.02 2.23 16 Total: -1.00 -70.15 310.42 2.15 -68.00 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -0.82 Total: 21.81 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 5.22 Total: 5.76 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -2.50 Total: -87.32 kcal Atomic # 8 Polarization: -49.88 SS G_CDS: -1.78 Total: -51.66 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -70.15 2.15 -68.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332384569.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.326 kcal (2) G-P(sol) polarization free energy of solvation -70.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds