Wall clock time and date at job start Tue Mar 31 2020 01:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 120.00004 * 2 1 4 4 C 1.50694 * 109.47227 * 89.99921 * 3 2 1 5 5 H 1.08006 * 119.99655 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99931 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00533 * 0.02562 * 6 4 3 8 8 Si 1.86808 * 119.99755 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47024 * 60.00148 * 8 6 4 10 10 H 1.48500 * 109.47014 * 299.99921 * 8 6 4 11 11 H 1.48501 * 109.46802 * 180.02562 * 8 6 4 12 12 C 1.34772 * 120.00088 * 180.02562 * 2 1 3 13 13 O 1.21604 * 119.99830 * 186.51608 * 12 2 1 14 14 C 1.47425 * 120.00108 * 6.51101 * 12 2 1 15 15 C 1.38047 * 126.41600 * 8.02898 * 14 12 2 16 16 N 1.34257 * 107.42129 * 179.97438 * 15 14 12 17 17 H 0.96998 * 125.75935 * 179.97438 * 16 15 14 18 18 N 1.39931 * 108.48843 * 0.02562 * 16 15 14 19 19 C 1.30450 * 108.90021 * 359.75046 * 18 16 15 20 20 C 1.50704 * 125.99051 * 180.25953 * 19 18 16 21 21 H 1.08999 * 110.75326 * 182.16727 * 20 19 18 22 22 C 1.55310 * 110.84862 * 305.86483 * 20 19 18 23 23 C 1.54939 * 100.94297 * 152.32440 * 22 20 19 24 24 O 1.43647 * 105.13680 * 323.55221 * 23 22 20 25 25 C 1.43240 * 109.97241 * 24.42903 * 24 23 22 26 26 H 1.09000 * 109.47066 * 95.89569 * 1 2 3 27 27 H 1.09001 * 109.46917 * 215.90037 * 1 2 3 28 28 H 1.09001 * 109.47282 * 335.89807 * 1 2 3 29 29 H 1.09000 * 109.46897 * 329.99854 * 3 2 1 30 30 H 1.08996 * 109.46868 * 210.00387 * 3 2 1 31 31 H 0.97006 * 119.99512 * 359.97438 * 7 6 4 32 32 H 1.08005 * 126.28789 * 359.97438 * 15 14 12 33 33 H 1.08996 * 111.11987 * 270.24365 * 22 20 19 34 34 H 1.09004 * 111.12653 * 34.39880 * 22 20 19 35 35 H 1.09000 * 110.30785 * 204.63848 * 23 22 20 36 36 H 1.08997 * 110.39724 * 82.51211 * 23 22 20 37 37 H 1.09000 * 109.83165 * 238.77892 * 25 24 23 38 38 H 1.09002 * 109.90651 * 117.83985 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 1.4207 5 1 2.0981 1.0958 2.2417 6 6 3.1269 2.8775 1.6726 7 7 3.5542 3.6176 0.6731 8 14 3.4388 3.4164 3.4339 9 1 4.2412 2.3811 4.1335 10 1 2.1415 3.5943 4.1342 11 1 4.1812 4.7025 3.4338 12 6 2.1389 -1.1672 -0.0005 13 8 3.3490 -1.1706 0.1190 14 6 1.4089 -2.4397 -0.1459 15 6 0.0688 -2.5865 -0.4429 16 7 -0.1921 -3.9028 -0.4836 17 1 -1.0552 -4.3041 -0.6704 18 7 0.9909 -4.5983 -0.2097 19 6 1.9510 -3.7376 -0.0121 20 6 3.3863 -4.0694 0.3057 21 1 3.9679 -3.1605 0.4595 22 6 3.4767 -5.0046 1.5423 23 6 4.8003 -5.7543 1.2480 24 8 4.8197 -5.9360 -0.1768 25 6 4.0089 -4.9383 -0.8083 26 1 -0.3633 -0.1056 -1.0222 27 1 -0.3633 -0.8325 0.6026 28 1 -0.3634 0.9381 0.4197 29 1 1.6084 2.0284 -0.5139 30 1 3.1499 1.1384 -0.5139 31 1 3.3925 3.3375 -0.2415 32 1 -0.6396 -1.7889 -0.6117 33 1 3.5478 -4.4294 2.4654 34 1 2.6334 -5.6946 1.5756 35 1 4.8083 -6.7203 1.7528 36 1 5.6544 -5.1557 1.5647 37 1 3.2199 -5.4161 -1.3891 38 1 4.6242 -4.3183 -1.4604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332404753.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:26 Heat of formation + Delta-G solvation = 5.105901 kcal Electronic energy + Delta-G solvation = -22077.668242 eV Core-core repulsion = 18729.419487 eV Total energy + Delta-G solvation = -3348.248755 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.54284 -39.11003 -38.54945 -35.13736 -33.44686 -32.95458 -30.66893 -30.43440 -28.90202 -27.37330 -26.07205 -23.36611 -23.26820 -22.31015 -21.60604 -19.83941 -19.32500 -17.35891 -16.93343 -16.46203 -16.04802 -15.93552 -15.21125 -14.95870 -14.76530 -14.13871 -13.89053 -13.70597 -13.46145 -13.15384 -12.99648 -12.51622 -12.29357 -11.88413 -11.67165 -11.52422 -11.40460 -11.30067 -10.97851 -10.88358 -10.68036 -10.54312 -10.09904 -9.62116 -9.37814 -9.14824 -9.03323 -8.70885 -8.38943 -7.65600 -6.38475 -4.10453 1.57820 2.20097 2.64011 3.42531 3.47410 3.64424 3.80068 3.91219 3.97685 4.42492 4.54006 4.58258 4.69707 4.92950 5.03236 5.23507 5.26124 5.34724 5.37792 5.42722 5.51755 5.61517 5.63387 5.70298 5.82486 5.91556 5.98077 6.00083 6.28851 6.42880 6.78426 6.99008 7.05369 7.09959 7.36658 7.51190 8.02767 8.26772 8.42981 8.77670 9.01883 9.58875 10.98797 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018149 B = 0.005080 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.404195 B = 5510.826443 C = 6447.762687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.594 5.594 3 C 0.238 3.762 4 C -0.604 4.604 5 H 0.051 0.949 6 C 0.020 3.980 7 N -0.910 5.910 8 Si 1.071 2.929 9 H -0.287 1.287 10 H -0.289 1.289 11 H -0.281 1.281 12 C 0.580 3.420 13 O -0.537 6.537 14 C -0.268 4.268 15 C 0.078 3.922 16 N -0.467 5.467 17 H 0.441 0.559 18 N -0.298 5.298 19 C 0.141 3.859 20 C -0.055 4.055 21 H 0.134 0.866 22 C -0.145 4.145 23 C 0.053 3.947 24 O -0.385 6.385 25 C 0.066 3.934 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.022 0.978 30 H 0.034 0.966 31 H 0.267 0.733 32 H 0.202 0.798 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.742 -15.227 -1.754 17.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.325 5.325 3 C 0.119 3.881 4 C -0.643 4.643 5 H 0.070 0.930 6 C -0.184 4.184 7 N -0.546 5.546 8 Si 0.899 3.101 9 H -0.214 1.214 10 H -0.215 1.215 11 H -0.207 1.207 12 C 0.367 3.633 13 O -0.415 6.415 14 C -0.283 4.283 15 C -0.072 4.072 16 N -0.172 5.172 17 H 0.285 0.715 18 N -0.120 5.120 19 C -0.027 4.027 20 C -0.076 4.076 21 H 0.152 0.848 22 C -0.184 4.184 23 C -0.024 4.024 24 O -0.304 6.304 25 C -0.011 4.011 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.219 0.781 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.601 -15.370 -0.936 17.172 hybrid contribution -1.497 -0.272 -0.869 1.752 sum -9.098 -15.642 -1.805 18.185 Atomic orbital electron populations 1.22089 0.82175 1.03382 0.99531 1.47759 1.05715 1.07298 1.71773 1.19358 0.91896 0.78671 0.98213 1.22234 1.40699 1.09451 0.91909 0.93050 1.25790 0.93303 0.93334 1.05988 1.70811 1.44083 1.39621 1.00074 0.83519 0.76415 0.76304 0.73902 1.21373 1.21520 1.20669 1.17170 0.86692 0.82077 0.77342 1.90681 1.13741 1.86439 1.50669 1.20593 0.93490 0.95174 1.19004 1.24259 0.97661 0.87557 0.97771 1.46114 1.10866 1.04654 1.55576 0.71452 1.77020 0.90845 1.19793 1.24358 1.21884 0.95036 0.89698 0.96060 1.21535 0.89214 1.01670 0.95133 0.84819 1.23328 0.98558 0.98171 0.98307 1.23365 0.96896 1.00294 0.81805 1.88364 1.70233 1.52999 1.18846 1.23135 0.94069 0.89248 0.94695 0.93523 0.91721 0.90295 0.96015 0.94803 0.92264 0.78141 0.89485 0.89990 0.89786 0.91742 0.91160 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.05 8.65 59.85 0.52 1.57 16 2 N -0.59 -12.36 2.86 -184.24 -0.53 -12.89 16 3 C 0.24 6.07 4.40 -5.19 -0.02 6.05 16 4 C -0.60 -17.10 9.38 -34.45 -0.32 -17.43 16 5 H 0.05 1.48 7.81 -52.48 -0.41 1.07 16 6 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 7 N -0.91 -27.47 13.65 55.43 0.76 -26.71 16 8 Si 1.07 25.42 29.90 -169.99 -5.08 20.34 16 9 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.58 12.26 7.64 -12.52 -0.10 12.16 16 13 O -0.54 -13.37 14.30 5.27 0.08 -13.29 16 14 C -0.27 -4.45 5.94 -105.07 -0.62 -5.07 16 15 C 0.08 0.93 9.91 -16.56 -0.16 0.76 16 16 N -0.47 -4.94 7.29 30.85 0.22 -4.72 16 17 H 0.44 2.79 8.96 -182.73 -1.64 1.16 16 18 N -0.30 -4.19 12.27 33.90 0.42 -3.78 16 19 C 0.14 2.24 5.81 -82.02 -0.48 1.77 16 20 C -0.06 -0.86 3.34 -89.82 -0.30 -1.16 16 21 H 0.13 2.43 5.78 -51.93 -0.30 2.13 16 22 C -0.15 -1.90 6.60 -24.48 -0.16 -2.06 16 23 C 0.05 0.65 7.78 38.18 0.30 0.94 16 24 O -0.39 -5.70 11.36 -35.23 -0.40 -6.10 16 25 C 0.07 0.96 7.39 37.88 0.28 1.24 16 26 H 0.05 0.53 7.27 -51.93 -0.38 0.15 16 27 H 0.06 0.79 5.46 -51.93 -0.28 0.50 16 28 H 0.08 1.19 8.03 -51.93 -0.42 0.78 16 29 H 0.02 0.55 7.94 -51.93 -0.41 0.14 16 30 H 0.03 0.96 7.39 -51.93 -0.38 0.58 16 31 H 0.27 7.99 7.22 -40.82 -0.29 7.69 16 32 H 0.20 1.71 4.47 -52.48 -0.23 1.47 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.08 1.05 7.86 -51.93 -0.41 0.64 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.01 7.68 -51.93 -0.40 0.61 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 313.70 15.07 4.73 4.73 Total: -1.00 -35.73 313.70 -7.03 -42.75 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -6.04 Total: 0.41 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -1.17 Total: -0.75 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.87 Total: -48.10 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.32 Total: -19.39 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.08 Total: 20.34 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -35.73 -7.03 -42.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332404753.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.858 kcal (2) G-P(sol) polarization free energy of solvation -35.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds