Wall clock time and date at job start Tue Mar 31 2020 01:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 120.00004 * 2 1 4 4 C 1.50694 * 109.47227 * 89.99921 * 3 2 1 5 5 H 1.08006 * 119.99655 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99931 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00533 * 0.02562 * 6 4 3 8 8 Si 1.86808 * 119.99755 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47024 * 60.00148 * 8 6 4 10 10 H 1.48500 * 109.47014 * 299.99921 * 8 6 4 11 11 H 1.48501 * 109.46802 * 180.02562 * 8 6 4 12 12 C 1.34772 * 120.00088 * 180.02562 * 2 1 3 13 13 O 1.21604 * 119.99830 * 186.51608 * 12 2 1 14 14 C 1.47425 * 120.00108 * 6.51101 * 12 2 1 15 15 C 1.38047 * 126.41600 * 8.02898 * 14 12 2 16 16 N 1.34257 * 107.42129 * 179.97438 * 15 14 12 17 17 H 0.96998 * 125.75935 * 179.97438 * 16 15 14 18 18 N 1.39931 * 108.48843 * 0.02562 * 16 15 14 19 19 C 1.30450 * 108.90021 * 359.75046 * 18 16 15 20 20 C 1.50704 * 125.99051 * 180.25953 * 19 18 16 21 21 H 1.08999 * 110.75326 * 182.16727 * 20 19 18 22 22 C 1.55310 * 110.84862 * 305.86483 * 20 19 18 23 23 C 1.54939 * 100.94297 * 152.32440 * 22 20 19 24 24 O 1.43647 * 105.13680 * 323.55221 * 23 22 20 25 25 C 1.43240 * 109.97241 * 24.42903 * 24 23 22 26 26 H 1.09000 * 109.47066 * 95.89569 * 1 2 3 27 27 H 1.09001 * 109.46917 * 215.90037 * 1 2 3 28 28 H 1.09001 * 109.47282 * 335.89807 * 1 2 3 29 29 H 1.09000 * 109.46897 * 329.99854 * 3 2 1 30 30 H 1.08996 * 109.46868 * 210.00387 * 3 2 1 31 31 H 0.97006 * 119.99512 * 359.97438 * 7 6 4 32 32 H 1.08005 * 126.28789 * 359.97438 * 15 14 12 33 33 H 1.08996 * 111.11987 * 270.24365 * 22 20 19 34 34 H 1.09004 * 111.12653 * 34.39880 * 22 20 19 35 35 H 1.09000 * 110.30785 * 204.63848 * 23 22 20 36 36 H 1.08997 * 110.39724 * 82.51211 * 23 22 20 37 37 H 1.09000 * 109.83165 * 238.77892 * 25 24 23 38 38 H 1.09002 * 109.90651 * 117.83985 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 1.4207 5 1 2.0981 1.0958 2.2417 6 6 3.1269 2.8775 1.6726 7 7 3.5542 3.6176 0.6731 8 14 3.4388 3.4164 3.4339 9 1 4.2412 2.3811 4.1335 10 1 2.1415 3.5943 4.1342 11 1 4.1812 4.7025 3.4338 12 6 2.1389 -1.1672 -0.0005 13 8 3.3490 -1.1706 0.1190 14 6 1.4089 -2.4397 -0.1459 15 6 0.0688 -2.5865 -0.4429 16 7 -0.1921 -3.9028 -0.4836 17 1 -1.0552 -4.3041 -0.6704 18 7 0.9909 -4.5983 -0.2097 19 6 1.9510 -3.7376 -0.0121 20 6 3.3863 -4.0694 0.3057 21 1 3.9679 -3.1605 0.4595 22 6 3.4767 -5.0046 1.5423 23 6 4.8003 -5.7543 1.2480 24 8 4.8197 -5.9360 -0.1768 25 6 4.0089 -4.9383 -0.8083 26 1 -0.3633 -0.1056 -1.0222 27 1 -0.3633 -0.8325 0.6026 28 1 -0.3634 0.9381 0.4197 29 1 1.6084 2.0284 -0.5139 30 1 3.1499 1.1384 -0.5139 31 1 3.3925 3.3375 -0.2415 32 1 -0.6396 -1.7889 -0.6117 33 1 3.5478 -4.4294 2.4654 34 1 2.6334 -5.6946 1.5756 35 1 4.8083 -6.7203 1.7528 36 1 5.6544 -5.1557 1.5647 37 1 3.2199 -5.4161 -1.3891 38 1 4.6242 -4.3183 -1.4604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332404753.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:25 Heat of formation + Delta-G solvation = -22.069784 kcal Electronic energy + Delta-G solvation = -22078.846668 eV Core-core repulsion = 18729.419487 eV Total energy + Delta-G solvation = -3349.427181 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.67303 -40.26011 -40.09274 -36.82370 -35.06372 -34.53452 -31.85821 -31.68367 -29.99924 -29.03850 -27.63179 -25.31642 -24.40200 -23.39077 -22.95534 -21.19886 -20.47252 -19.09420 -18.55372 -17.57119 -17.42853 -17.07233 -16.80691 -16.41532 -15.87825 -15.66182 -15.46921 -15.00351 -14.75397 -14.57013 -14.20747 -14.12807 -13.82797 -13.49021 -13.25588 -12.93472 -12.76156 -12.55808 -12.47041 -12.33664 -12.08020 -11.94869 -11.79964 -11.17649 -10.71901 -10.64356 -10.58754 -10.44313 -9.91459 -9.41316 -8.65283 -6.41333 0.51279 0.94730 1.50774 1.59687 1.71175 1.79163 2.29595 2.47854 2.56763 2.83045 3.13019 3.30765 3.50446 3.58259 3.90520 3.97736 4.09131 4.18699 4.23186 4.26740 4.36654 4.52357 4.54409 4.65562 4.77467 4.79660 4.84939 4.87163 4.89166 4.97728 5.12116 5.25755 5.58842 5.85590 5.90659 6.17872 6.21438 6.44051 6.49069 6.72818 7.32454 7.46022 8.69229 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018149 B = 0.005080 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.404195 B = 5510.826443 C = 6447.762687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.603 5.603 3 C 0.249 3.751 4 C -0.613 4.613 5 H 0.042 0.958 6 C -0.030 4.030 7 N -0.932 5.932 8 Si 1.116 2.884 9 H -0.282 1.282 10 H -0.261 1.261 11 H -0.280 1.280 12 C 0.572 3.428 13 O -0.594 6.594 14 C -0.310 4.310 15 C 0.120 3.880 16 N -0.439 5.439 17 H 0.464 0.536 18 N -0.304 5.304 19 C 0.131 3.869 20 C -0.061 4.061 21 H 0.099 0.901 22 C -0.137 4.137 23 C 0.050 3.950 24 O -0.398 6.398 25 C 0.072 3.928 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.025 0.975 30 H -0.008 1.008 31 H 0.256 0.744 32 H 0.243 0.757 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.608 -16.668 -1.046 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.333 5.333 3 C 0.127 3.873 4 C -0.652 4.652 5 H 0.061 0.939 6 C -0.229 4.229 7 N -0.569 5.569 8 Si 0.937 3.063 9 H -0.208 1.208 10 H -0.186 1.186 11 H -0.205 1.205 12 C 0.362 3.638 13 O -0.476 6.476 14 C -0.325 4.325 15 C -0.033 4.033 16 N -0.146 5.146 17 H 0.314 0.686 18 N -0.127 5.127 19 C -0.036 4.036 20 C -0.082 4.082 21 H 0.117 0.883 22 C -0.175 4.175 23 C -0.025 4.025 24 O -0.318 6.318 25 C -0.005 4.005 26 H 0.108 0.892 27 H 0.113 0.887 28 H 0.091 0.909 29 H 0.043 0.957 30 H 0.010 0.990 31 H 0.065 0.935 32 H 0.258 0.742 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.130 0.870 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.558 -16.868 -0.247 19.901 hybrid contribution -0.685 0.116 -1.150 1.344 sum -11.243 -16.753 -1.397 20.224 Atomic orbital electron populations 1.22498 0.78229 1.04443 1.02828 1.47763 1.08220 1.05536 1.71809 1.18886 0.90909 0.81117 0.96351 1.22520 1.40387 1.09291 0.92962 0.93918 1.27275 0.92691 0.93691 1.09201 1.70928 1.45606 1.40415 0.99997 0.82953 0.77654 0.75985 0.69694 1.20840 1.18574 1.20467 1.17838 0.86404 0.83434 0.76126 1.90646 1.16358 1.87394 1.53185 1.20265 0.95576 0.93115 1.23528 1.24612 0.96065 0.88632 0.93992 1.46146 1.11044 1.04222 1.53216 0.68597 1.76989 0.91419 1.19705 1.24554 1.21853 0.95344 0.89828 0.96580 1.21403 0.89366 1.00720 0.96717 0.88315 1.23288 0.99247 0.97714 0.97246 1.23548 0.96504 1.01760 0.80726 1.88337 1.70360 1.52906 1.20219 1.23037 0.93968 0.89047 0.94454 0.89212 0.88721 0.90913 0.95714 0.98994 0.93490 0.74186 0.89383 0.89275 0.86996 0.91606 0.90667 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.61 8.65 127.77 1.11 2.72 16 2 N -0.60 -25.09 2.86 -855.06 -2.44 -27.53 16 3 C 0.25 13.16 4.40 85.63 0.38 13.53 16 4 C -0.61 -35.50 9.38 25.60 0.24 -35.26 16 5 H 0.04 2.49 7.81 -2.91 -0.02 2.47 16 6 C -0.03 -1.77 5.46 84.65 0.46 -1.31 16 7 N -0.93 -57.75 13.65 21.44 0.29 -57.46 16 8 Si 1.12 51.19 29.90 68.60 2.05 53.24 16 9 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 10 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 12 C 0.57 24.68 7.64 86.66 0.66 25.35 16 13 O -0.59 -31.48 14.30 -4.04 -0.06 -31.54 16 14 C -0.31 -9.91 5.94 -20.15 -0.12 -10.03 16 15 C 0.12 2.35 9.91 84.28 0.84 3.19 16 16 N -0.44 -7.38 7.29 -56.31 -0.41 -7.79 16 17 H 0.46 3.40 8.96 -213.43 -1.91 1.49 16 18 N -0.30 -7.77 12.27 -46.67 -0.57 -8.34 16 19 C 0.13 4.08 5.81 43.52 0.25 4.33 16 20 C -0.06 -1.96 3.34 -10.27 -0.03 -2.00 16 21 H 0.10 3.89 5.78 -2.39 -0.01 3.87 16 22 C -0.14 -3.52 6.60 32.05 0.21 -3.31 16 23 C 0.05 1.20 7.78 72.64 0.56 1.76 16 24 O -0.40 -11.69 11.36 -148.98 -1.69 -13.38 16 25 C 0.07 2.15 7.39 72.45 0.54 2.69 16 26 H 0.09 1.60 7.27 -2.39 -0.02 1.59 16 27 H 0.09 1.89 5.46 -2.39 -0.01 1.88 16 28 H 0.07 2.03 8.03 -2.39 -0.02 2.01 16 29 H 0.02 1.28 7.94 -2.39 -0.02 1.26 16 30 H -0.01 -0.48 7.39 -2.39 -0.02 -0.50 16 31 H 0.26 15.95 7.22 -92.70 -0.67 15.28 16 32 H 0.24 2.62 4.47 -2.91 -0.01 2.61 16 33 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.09 2.16 7.86 -2.39 -0.02 2.14 16 35 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.08 2.14 7.68 -2.39 -0.02 2.12 16 38 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -82.71 313.70 1.55 -81.16 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -0.71 Total: 9.98 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 5.09 Total: 1.65 kcal Atomic # 7 Polarization: -97.99 SS G_CDS: -3.13 Total: -101.12 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -1.75 Total: -44.91 kcal Atomic # 14 Polarization: 51.19 SS G_CDS: 2.05 Total: 53.24 kcal Total: -82.71 1.55 -81.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332404753.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.089 kcal (2) G-P(sol) polarization free energy of solvation -82.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds