Wall clock time and date at job start Tue Mar 31 2020 01:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37105 * 120.00000 * 2 1 4 4 H 1.07997 * 119.99647 * 158.38633 * 3 2 1 5 5 C 1.38946 * 120.00171 * 338.37815 * 3 2 1 6 6 N 1.31411 * 119.99936 * 347.36030 * 5 3 2 7 7 Si 1.86800 * 120.00133 * 167.35188 * 5 3 2 8 8 H 1.48497 * 109.46796 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.46735 * 120.00510 * 7 5 3 10 10 H 1.48497 * 109.47165 * 240.00749 * 7 5 3 11 11 C 1.34777 * 120.00114 * 179.72371 * 2 1 3 12 12 O 1.21294 * 120.00201 * 180.27642 * 11 2 1 13 13 C 1.50702 * 119.99840 * 0.28016 * 11 2 1 14 14 H 1.09005 * 110.43402 * 302.53955 * 13 11 2 15 15 C 1.54807 * 110.48795 * 65.22954 * 13 11 2 16 16 C 1.54993 * 102.09025 * 97.80107 * 15 13 11 17 17 O 1.44377 * 103.49205 * 37.02319 * 16 15 13 18 18 C 1.43742 * 106.97394 * 319.93661 * 17 16 15 19 19 H 1.09006 * 110.00455 * 267.02323 * 18 17 16 20 20 C 1.50704 * 109.87644 * 145.94055 * 18 17 16 21 21 C 1.39868 * 126.04250 * 326.86441 * 20 18 17 22 22 N 1.30838 * 108.20361 * 179.81731 * 21 20 18 23 23 N 1.40090 * 108.20393 * 0.43937 * 22 21 20 24 24 C 1.46491 * 126.03557 * 179.69814 * 23 22 21 25 25 C 1.34947 * 107.92517 * 359.71563 * 23 22 21 26 26 H 1.09003 * 109.46898 * 90.29130 * 1 2 3 27 27 H 1.08995 * 109.47438 * 210.29700 * 1 2 3 28 28 H 1.09004 * 109.47022 * 330.29883 * 1 2 3 29 29 H 0.96997 * 120.00370 * 179.97438 * 6 5 3 30 30 H 1.09010 * 110.90258 * 215.99614 * 15 13 11 31 31 H 1.08997 * 110.91118 * 339.59558 * 15 13 11 32 32 H 1.08994 * 110.61661 * 278.51628 * 16 15 13 33 33 H 1.09011 * 110.75222 * 155.58830 * 16 15 13 34 34 H 1.08004 * 125.89527 * 359.97438 * 21 20 18 35 35 H 1.08998 * 109.47352 * 270.02063 * 24 23 22 36 36 H 1.09005 * 109.47011 * 30.02194 * 24 23 22 37 37 H 1.09004 * 109.46935 * 150.02206 * 24 23 22 38 38 H 1.08002 * 126.12551 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1735 1.2202 0.3445 5 6 1.5291 2.3484 -0.4434 6 7 0.3869 2.2767 -1.0892 7 14 2.3173 4.0110 -0.1213 8 1 3.5905 3.8202 0.6187 9 1 2.5933 4.6867 -1.4146 10 1 1.3948 4.8478 0.6874 11 6 2.1389 -1.1672 0.0056 12 8 3.3518 -1.1672 0.0107 13 6 1.3854 -2.4723 0.0055 14 1 0.7156 -2.5251 0.8640 15 6 0.5938 -2.6409 -1.3142 16 6 1.5407 -3.5412 -2.1479 17 8 2.1018 -4.4395 -1.1667 18 6 2.3658 -3.6612 0.0125 19 1 3.3924 -3.2951 -0.0044 20 6 2.1421 -4.5026 1.2426 21 6 1.1926 -5.5201 1.3822 22 7 1.3036 -6.0204 2.5860 23 7 2.3221 -5.3293 3.2550 24 6 2.7671 -5.5690 4.6299 25 6 2.8206 -4.4034 2.4092 26 1 -0.3633 -0.0052 -1.0277 27 1 -0.3634 -0.8872 0.5184 28 1 -0.3633 0.8927 0.5092 29 1 -0.0471 3.0872 -1.3984 30 1 -0.3591 -3.1391 -1.1352 31 1 0.4422 -1.6783 -1.8025 32 1 2.3244 -2.9450 -2.6151 33 1 0.9817 -4.0964 -2.9013 34 1 0.4908 -5.8394 0.6259 35 1 2.1895 -4.9459 5.3126 36 1 2.6182 -6.6190 4.8821 37 1 3.8248 -5.3206 4.7180 38 1 3.6179 -3.7076 2.6249 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332410006.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:25 Heat of formation + Delta-G solvation = 15.595738 kcal Electronic energy + Delta-G solvation = -22352.085465 eV Core-core repulsion = 19004.291583 eV Total energy + Delta-G solvation = -3347.793882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.13469 -39.52427 -37.49879 -34.71846 -33.26079 -32.22132 -31.24368 -30.76166 -28.21248 -26.51882 -26.06947 -24.60052 -22.60929 -21.80022 -20.77145 -20.04545 -18.73518 -17.09608 -16.89655 -16.10714 -15.42525 -15.31107 -15.22855 -14.64967 -14.39198 -14.07485 -13.92577 -13.79815 -13.03366 -12.79416 -12.64362 -12.48574 -12.27927 -12.05044 -11.66794 -11.46010 -11.21367 -10.96750 -10.84840 -10.78855 -10.63490 -10.40050 -10.31788 -10.21494 -9.29223 -9.27068 -9.04876 -8.47716 -8.08532 -7.72174 -6.35036 -3.89949 2.01019 2.61499 2.94670 3.12480 3.23471 3.29998 3.83386 4.09247 4.27809 4.64388 4.81776 5.00345 5.06179 5.07254 5.19196 5.20648 5.29824 5.34894 5.43935 5.62603 5.74542 5.84484 5.87885 5.94422 6.08285 6.24978 6.31405 6.37407 6.48110 6.60079 6.82715 6.85432 7.09318 7.19693 7.31635 7.54024 7.83411 8.10119 8.45408 9.15463 9.40160 9.95190 10.69065 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022185 B = 0.004974 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.819223 B = 5628.413998 C = 6284.900982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.442 5.442 3 C -0.306 4.306 4 H 0.099 0.901 5 C 0.030 3.970 6 N -0.882 5.882 7 Si 0.925 3.075 8 H -0.268 1.268 9 H -0.281 1.281 10 H -0.281 1.281 11 C 0.453 3.547 12 O -0.589 6.589 13 C -0.123 4.123 14 H 0.093 0.907 15 C -0.145 4.145 16 C 0.049 3.951 17 O -0.373 6.373 18 C 0.165 3.835 19 H 0.099 0.901 20 C -0.227 4.227 21 C 0.071 3.929 22 N -0.308 5.308 23 N -0.382 5.382 24 C 0.105 3.895 25 C 0.067 3.933 26 H 0.057 0.943 27 H 0.026 0.974 28 H 0.071 0.929 29 H 0.267 0.733 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.183 0.817 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.916 -11.019 5.275 12.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.160 5.160 3 C -0.434 4.434 4 H 0.117 0.883 5 C -0.173 4.173 6 N -0.522 5.522 7 Si 0.752 3.248 8 H -0.192 1.192 9 H -0.207 1.207 10 H -0.207 1.207 11 C 0.241 3.759 12 O -0.474 6.474 13 C -0.145 4.145 14 H 0.111 0.889 15 C -0.183 4.183 16 C -0.027 4.027 17 O -0.292 6.292 18 C 0.106 3.894 19 H 0.116 0.884 20 C -0.239 4.239 21 C -0.115 4.115 22 N -0.130 5.130 23 N -0.165 5.165 24 C -0.037 4.037 25 C -0.079 4.079 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.200 0.800 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.816 -11.966 6.177 13.491 hybrid contribution 0.295 1.869 -0.421 1.939 sum -0.521 -10.097 5.756 11.634 Atomic orbital electron populations 1.21559 0.81153 0.99221 1.01234 1.43540 1.05509 1.04677 1.62292 1.19720 0.99083 0.83650 1.40911 0.88286 1.25317 0.96504 1.00023 0.95421 1.70008 1.17448 1.29109 1.35602 0.85878 0.79238 0.81486 0.78209 1.19249 1.20726 1.20688 1.19741 0.87807 0.84581 0.83804 1.90478 1.13895 1.86665 1.56397 1.22481 0.97752 0.94836 0.99470 0.88882 1.23175 0.98486 1.01620 0.95068 1.23503 0.95629 0.91753 0.91832 1.88790 1.83656 1.33392 1.23411 1.20812 0.99928 0.86830 0.81792 0.88356 1.20020 1.02710 1.04530 0.96598 1.23686 0.98633 0.95133 0.94087 1.77300 1.07853 1.20139 1.07663 1.48398 1.28498 1.27484 1.12072 1.21794 1.00285 1.03526 0.78074 1.22281 1.00203 0.94839 0.90603 0.92498 0.95553 0.91059 0.92296 0.90465 0.89074 0.92003 0.89279 0.80043 0.90951 0.89556 0.89591 0.80663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.45 7.37 59.85 0.44 2.89 16 2 N -0.44 -11.06 3.00 -122.19 -0.37 -11.43 16 3 C -0.31 -8.36 9.30 -14.93 -0.14 -8.50 16 4 H 0.10 2.84 7.39 -52.49 -0.39 2.46 16 5 C 0.03 0.79 5.08 -17.47 -0.09 0.70 16 6 N -0.88 -22.99 10.64 55.50 0.59 -22.40 16 7 Si 0.93 20.43 29.57 -169.99 -5.03 15.41 16 8 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 C 0.45 10.73 6.93 -10.98 -0.08 10.65 16 12 O -0.59 -15.74 14.94 5.55 0.08 -15.66 16 13 C -0.12 -2.30 2.12 -90.25 -0.19 -2.49 16 14 H 0.09 1.68 6.84 -51.93 -0.36 1.32 16 15 C -0.15 -2.37 5.88 -24.73 -0.15 -2.52 16 16 C 0.05 0.78 7.72 38.21 0.29 1.07 16 17 O -0.37 -6.48 10.89 -35.23 -0.38 -6.87 16 18 C 0.17 2.98 3.50 -27.31 -0.10 2.88 16 19 H 0.10 2.01 6.44 -51.93 -0.33 1.68 16 20 C -0.23 -3.72 4.95 -105.05 -0.52 -4.24 16 21 C 0.07 1.09 11.62 -17.36 -0.20 0.89 16 22 N -0.31 -4.80 12.58 30.63 0.39 -4.42 16 23 N -0.38 -5.24 4.01 -68.16 -0.27 -5.51 16 24 C 0.10 0.91 11.47 59.84 0.69 1.60 16 25 C 0.07 0.99 11.40 -17.22 -0.20 0.79 16 26 H 0.06 1.26 6.76 -51.93 -0.35 0.91 16 27 H 0.03 0.49 6.26 -51.93 -0.32 0.16 16 28 H 0.07 1.66 6.86 -51.93 -0.36 1.31 16 29 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 30 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 31 H 0.09 1.64 6.13 -51.93 -0.32 1.32 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 34 H 0.18 2.44 8.06 -52.48 -0.42 2.01 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.18 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 314.24 15.07 4.74 4.74 Total: -1.00 -32.22 314.24 -5.43 -37.66 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -4.94 Total: 4.76 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -0.23 Total: 3.73 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.34 Total: -43.76 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.30 Total: -22.53 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.22 -5.43 -37.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332410006.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.252 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds