Wall clock time and date at job start Tue Mar 31 2020 01:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37105 * 120.00000 * 2 1 4 4 H 1.07997 * 119.99647 * 158.38633 * 3 2 1 5 5 C 1.38946 * 120.00171 * 338.37815 * 3 2 1 6 6 N 1.31411 * 119.99936 * 347.36030 * 5 3 2 7 7 Si 1.86800 * 120.00133 * 167.35188 * 5 3 2 8 8 H 1.48497 * 109.46796 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.46735 * 120.00510 * 7 5 3 10 10 H 1.48497 * 109.47165 * 240.00749 * 7 5 3 11 11 C 1.34777 * 120.00114 * 179.72371 * 2 1 3 12 12 O 1.21294 * 120.00201 * 180.27642 * 11 2 1 13 13 C 1.50702 * 119.99840 * 0.28016 * 11 2 1 14 14 H 1.09005 * 110.43402 * 302.53955 * 13 11 2 15 15 C 1.54807 * 110.48795 * 65.22954 * 13 11 2 16 16 C 1.54993 * 102.09025 * 97.80107 * 15 13 11 17 17 O 1.44377 * 103.49205 * 37.02319 * 16 15 13 18 18 C 1.43742 * 106.97394 * 319.93661 * 17 16 15 19 19 H 1.09006 * 110.00455 * 267.02323 * 18 17 16 20 20 C 1.50704 * 109.87644 * 145.94055 * 18 17 16 21 21 C 1.39868 * 126.04250 * 326.86441 * 20 18 17 22 22 N 1.30838 * 108.20361 * 179.81731 * 21 20 18 23 23 N 1.40090 * 108.20393 * 0.43937 * 22 21 20 24 24 C 1.46491 * 126.03557 * 179.69814 * 23 22 21 25 25 C 1.34947 * 107.92517 * 359.71563 * 23 22 21 26 26 H 1.09003 * 109.46898 * 90.29130 * 1 2 3 27 27 H 1.08995 * 109.47438 * 210.29700 * 1 2 3 28 28 H 1.09004 * 109.47022 * 330.29883 * 1 2 3 29 29 H 0.96997 * 120.00370 * 179.97438 * 6 5 3 30 30 H 1.09010 * 110.90258 * 215.99614 * 15 13 11 31 31 H 1.08997 * 110.91118 * 339.59558 * 15 13 11 32 32 H 1.08994 * 110.61661 * 278.51628 * 16 15 13 33 33 H 1.09011 * 110.75222 * 155.58830 * 16 15 13 34 34 H 1.08004 * 125.89527 * 359.97438 * 21 20 18 35 35 H 1.08998 * 109.47352 * 270.02063 * 24 23 22 36 36 H 1.09005 * 109.47011 * 30.02194 * 24 23 22 37 37 H 1.09004 * 109.46935 * 150.02206 * 24 23 22 38 38 H 1.08002 * 126.12551 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1735 1.2202 0.3445 5 6 1.5291 2.3484 -0.4434 6 7 0.3869 2.2767 -1.0892 7 14 2.3173 4.0110 -0.1213 8 1 3.5905 3.8202 0.6187 9 1 2.5933 4.6867 -1.4146 10 1 1.3948 4.8478 0.6874 11 6 2.1389 -1.1672 0.0056 12 8 3.3518 -1.1672 0.0107 13 6 1.3854 -2.4723 0.0055 14 1 0.7156 -2.5251 0.8640 15 6 0.5938 -2.6409 -1.3142 16 6 1.5407 -3.5412 -2.1479 17 8 2.1018 -4.4395 -1.1667 18 6 2.3658 -3.6612 0.0125 19 1 3.3924 -3.2951 -0.0044 20 6 2.1421 -4.5026 1.2426 21 6 1.1926 -5.5201 1.3822 22 7 1.3036 -6.0204 2.5860 23 7 2.3221 -5.3293 3.2550 24 6 2.7671 -5.5690 4.6299 25 6 2.8206 -4.4034 2.4092 26 1 -0.3633 -0.0052 -1.0277 27 1 -0.3634 -0.8872 0.5184 28 1 -0.3633 0.8927 0.5092 29 1 -0.0471 3.0872 -1.3984 30 1 -0.3591 -3.1391 -1.1352 31 1 0.4422 -1.6783 -1.8025 32 1 2.3244 -2.9450 -2.6151 33 1 0.9817 -4.0964 -2.9013 34 1 0.4908 -5.8394 0.6259 35 1 2.1895 -4.9459 5.3126 36 1 2.6182 -6.6190 4.8821 37 1 3.8248 -5.3206 4.7180 38 1 3.6179 -3.7076 2.6249 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332410006.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:24 Heat of formation + Delta-G solvation = -6.101933 kcal Electronic energy + Delta-G solvation = -22353.026346 eV Core-core repulsion = 19004.291583 eV Total energy + Delta-G solvation = -3348.734763 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.30702 -41.07806 -39.14936 -36.67372 -34.26449 -33.98507 -32.84399 -32.06544 -29.38878 -28.24606 -27.34830 -26.36837 -24.02862 -23.22136 -21.86572 -21.32042 -20.40594 -18.88949 -18.33065 -17.72242 -17.08706 -16.58961 -16.28314 -16.25588 -15.89109 -15.62429 -15.54987 -15.16600 -14.31687 -14.05017 -13.89474 -13.75759 -13.63781 -13.42333 -13.26918 -13.09382 -12.85265 -12.65327 -12.39690 -12.35747 -12.11531 -12.05811 -11.94717 -11.62310 -11.00237 -10.68682 -10.35863 -10.27685 -9.69721 -9.32965 -8.33411 -5.96846 0.88507 1.35814 1.41747 1.54921 1.66011 1.75544 2.00416 2.27410 2.90474 3.08845 3.15597 3.65324 3.69016 3.94489 3.97998 4.00320 4.21588 4.33906 4.39829 4.42835 4.44815 4.55086 4.68188 4.69213 4.74993 4.85787 4.96683 5.03915 5.05247 5.13582 5.23619 5.40989 5.45885 5.67391 5.93278 6.08334 6.11084 6.48384 6.70768 7.16759 7.47385 8.02798 8.68926 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022185 B = 0.004974 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.819223 B = 5628.413998 C = 6284.900982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.457 5.457 3 C -0.343 4.343 4 H 0.072 0.928 5 C 0.000 4.000 6 N -0.894 5.894 7 Si 0.987 3.013 8 H -0.274 1.274 9 H -0.276 1.276 10 H -0.266 1.266 11 C 0.446 3.554 12 O -0.629 6.629 13 C -0.113 4.113 14 H 0.105 0.895 15 C -0.138 4.138 16 C 0.048 3.952 17 O -0.375 6.375 18 C 0.175 3.825 19 H 0.066 0.934 20 C -0.251 4.251 21 C 0.069 3.931 22 N -0.325 5.325 23 N -0.377 5.377 24 C 0.093 3.907 25 C 0.066 3.934 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.273 0.727 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.128 0.872 34 H 0.199 0.801 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.079 -11.682 5.842 13.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.175 5.175 3 C -0.471 4.471 4 H 0.090 0.910 5 C -0.202 4.202 6 N -0.533 5.533 7 Si 0.811 3.189 8 H -0.199 1.199 9 H -0.201 1.201 10 H -0.191 1.191 11 C 0.236 3.764 12 O -0.517 6.517 13 C -0.135 4.135 14 H 0.123 0.877 15 C -0.176 4.176 16 C -0.028 4.028 17 O -0.295 6.295 18 C 0.116 3.884 19 H 0.083 0.917 20 C -0.263 4.263 21 C -0.116 4.116 22 N -0.147 5.147 23 N -0.159 5.159 24 C -0.047 4.047 25 C -0.082 4.082 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.131 0.869 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.146 0.854 34 H 0.215 0.785 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.128 0.872 38 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -2.014 -12.649 6.757 14.481 hybrid contribution 0.710 2.050 -0.575 2.244 sum -1.303 -10.599 6.182 12.339 Atomic orbital electron populations 1.21487 0.79390 0.99948 1.01108 1.43770 1.06694 1.04524 1.62491 1.19651 0.98778 0.85593 1.43122 0.91042 1.26020 0.96967 1.02642 0.94581 1.70066 1.17869 1.30252 1.35091 0.84971 0.78315 0.77427 0.78210 1.19901 1.20138 1.19129 1.20608 0.87689 0.85927 0.82192 1.90446 1.15937 1.87563 1.57733 1.22411 0.97766 0.91997 1.01337 0.87660 1.23191 0.99819 1.01247 0.93359 1.23638 0.95182 0.91879 0.92124 1.88794 1.83789 1.33433 1.23446 1.20503 0.97880 0.87008 0.83034 0.91667 1.19950 1.04355 1.05532 0.96414 1.23908 0.98653 0.94616 0.94449 1.77255 1.08749 1.20790 1.07926 1.48778 1.27483 1.26412 1.13259 1.22211 1.01963 1.04695 0.75782 1.22516 1.00117 0.94967 0.90581 0.92998 0.92102 0.92841 0.91689 0.86854 0.90846 0.94208 0.85389 0.78460 0.89638 0.88382 0.87201 0.79592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.36 7.37 127.77 0.94 6.30 16 2 N -0.46 -23.29 3.00 -658.89 -1.98 -25.26 16 3 C -0.34 -19.34 9.30 84.04 0.78 -18.56 16 4 H 0.07 4.32 7.39 -2.91 -0.02 4.30 16 5 C 0.00 -0.01 5.08 84.93 0.43 0.42 16 6 N -0.89 -46.40 10.64 21.66 0.23 -46.17 16 7 Si 0.99 41.97 29.57 68.60 2.03 43.99 16 8 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 9 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 10 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 11 C 0.45 21.63 6.93 87.66 0.61 22.24 16 12 O -0.63 -35.13 14.94 -3.07 -0.05 -35.17 16 13 C -0.11 -4.16 2.12 -10.55 -0.02 -4.18 16 14 H 0.11 3.62 6.84 -2.38 -0.02 3.60 16 15 C -0.14 -4.27 5.88 31.89 0.19 -4.08 16 16 C 0.05 1.44 7.72 72.66 0.56 2.00 16 17 O -0.38 -12.63 10.89 -148.98 -1.62 -14.25 16 18 C 0.18 6.29 3.50 30.22 0.11 6.39 16 19 H 0.07 2.78 6.44 -2.38 -0.02 2.77 16 20 C -0.25 -7.98 4.95 -20.14 -0.10 -8.08 16 21 C 0.07 2.01 11.62 85.24 0.99 3.01 16 22 N -0.33 -9.55 12.58 -57.02 -0.72 -10.26 16 23 N -0.38 -9.66 4.01 -369.57 -1.48 -11.14 16 24 C 0.09 1.39 11.47 127.77 1.47 2.86 16 25 C 0.07 1.88 11.40 83.54 0.95 2.83 16 26 H 0.05 2.28 6.76 -2.39 -0.02 2.26 16 27 H 0.06 2.16 6.26 -2.39 -0.01 2.15 16 28 H 0.05 2.48 6.86 -2.38 -0.02 2.46 16 29 H 0.27 13.26 8.31 -92.71 -0.77 12.49 16 30 H 0.11 2.72 8.14 -2.38 -0.02 2.70 16 31 H 0.07 2.57 6.13 -2.39 -0.01 2.56 16 32 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.13 2.85 8.14 -2.38 -0.02 2.83 16 34 H 0.20 4.84 8.06 -2.91 -0.02 4.82 16 35 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.19 4.76 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -70.93 314.24 4.39 -66.54 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 1.07 Total: 20.57 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 6.90 Total: 11.15 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -3.94 Total: -92.84 kcal Atomic # 8 Polarization: -47.76 SS G_CDS: -1.67 Total: -49.43 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 43.99 kcal Total: -70.93 4.39 -66.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332410006.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.438 kcal (2) G-P(sol) polarization free energy of solvation -70.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds