Wall clock time and date at job start Tue Mar 31 2020 01:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35893 * 117.00407 * 2 1 4 4 C 1.38757 * 120.05618 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94453 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05627 * 359.97438 * 5 4 3 7 7 C 1.38244 * 120.10979 * 0.04366 * 6 5 4 8 8 C 1.50700 * 119.97157 * 179.97438 * 7 6 5 9 9 F 1.39895 * 109.46258 * 134.97361 * 8 7 6 10 10 C 1.53042 * 109.45903 * 14.99941 * 8 7 6 11 11 C 1.53192 * 109.31216 * 178.61627 * 10 8 7 12 12 N 1.46930 * 108.77834 * 54.63480 * 11 10 8 13 13 C 1.36932 * 120.62872 * 126.36699 * 12 11 10 14 14 H 1.08002 * 120.00663 * 332.45264 * 13 12 11 15 15 C 1.38819 * 119.99763 * 152.17982 * 13 12 11 16 16 N 1.31619 * 119.99653 * 343.16079 * 15 13 12 17 17 Si 1.86799 * 120.00056 * 163.16209 * 15 13 12 18 18 H 1.48498 * 109.47033 * 89.99898 * 17 15 13 19 19 H 1.48497 * 109.46906 * 209.99748 * 17 15 13 20 20 H 1.48496 * 109.47329 * 330.00182 * 17 15 13 21 21 C 1.46922 * 118.73694 * 306.64373 * 12 11 10 22 22 C 1.52760 * 109.00877 * 53.30539 * 21 12 11 23 23 C 1.38159 * 120.05978 * 0.23261 * 7 6 5 24 24 H 1.09001 * 109.47143 * 300.00641 * 1 2 3 25 25 H 1.09004 * 109.46738 * 60.00048 * 1 2 3 26 26 H 1.08999 * 109.47812 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.02477 * 0.04103 * 4 3 2 28 28 H 1.07996 * 119.97212 * 179.97438 * 5 4 3 29 29 H 1.07998 * 119.94423 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.49976 * 58.66550 * 10 8 7 31 31 H 1.09004 * 109.52502 * 298.58124 * 10 8 7 32 32 H 1.08997 * 109.58711 * 294.84701 * 11 10 8 33 33 H 1.09000 * 109.58605 * 174.41989 * 11 10 8 34 34 H 0.97007 * 119.99830 * 179.97438 * 16 15 13 35 35 H 1.08996 * 109.58958 * 173.14351 * 21 12 11 36 36 H 1.09005 * 109.58698 * 293.56931 * 21 12 11 37 37 H 1.08996 * 109.56719 * 185.54717 * 22 21 12 38 38 H 1.09010 * 109.35781 * 65.50425 * 22 21 12 39 39 H 1.07997 * 120.03316 * 179.74069 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9211 3.6047 -0.0011 6 6 3.3021 3.6756 -0.0005 7 6 4.0561 2.5169 -0.0004 8 6 5.5609 2.5978 -0.0004 9 9 6.0764 1.6921 0.9329 10 6 5.9951 4.0171 0.3729 11 6 7.5251 4.0867 0.4056 12 7 8.0477 3.6153 -0.8841 13 6 8.9153 4.3875 -1.6095 14 1 8.8916 5.4629 -1.5127 15 6 9.8293 3.7876 -2.4651 16 7 10.0988 2.5049 -2.3455 17 14 10.6766 4.8010 -3.7859 18 1 11.9355 5.3702 -3.2416 19 1 10.9881 3.9344 -4.9508 20 1 9.7797 5.9039 -4.2151 21 6 7.6169 2.3025 -1.3836 22 6 6.0902 2.2505 -1.3937 23 6 3.4312 1.2847 -0.0056 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3635 -1.0276 -0.0005 27 1 0.2129 2.3204 -0.0003 28 1 1.3343 4.5113 -0.0019 29 1 3.7925 4.6379 -0.0005 30 1 5.5982 4.2725 1.3555 31 1 5.6147 4.7210 -0.3673 32 1 7.9027 3.4516 1.2070 33 1 7.8405 5.1165 0.5733 34 1 10.7372 2.0856 -2.9436 35 1 7.9929 2.1554 -2.3961 36 1 8.0022 1.5189 -0.7311 37 1 5.7609 1.2485 -1.6686 38 1 5.7089 2.9706 -2.1178 39 1 4.0206 0.3798 -0.0097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334239289.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:13 Heat of formation + Delta-G solvation = -56.102381 kcal Electronic energy + Delta-G solvation = -22140.172278 eV Core-core repulsion = 18769.349371 eV Total energy + Delta-G solvation = -3370.822907 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.70407 -41.11292 -39.20461 -38.05484 -34.95184 -33.04319 -32.03153 -31.57066 -30.19116 -28.16474 -26.98052 -24.46649 -24.40057 -23.02129 -22.12455 -20.64919 -19.14233 -18.68606 -17.34024 -16.95850 -16.77829 -16.65827 -16.42090 -16.25050 -16.13818 -15.31923 -15.23817 -14.94842 -14.64642 -14.40477 -13.66586 -13.55907 -13.30426 -13.24247 -13.17031 -13.06482 -12.70524 -12.57496 -12.45532 -12.30427 -12.06367 -11.94273 -11.80759 -11.74055 -11.20758 -11.17609 -10.56466 -9.88707 -9.19084 -8.72241 -7.87851 -5.34474 0.24913 0.45703 1.48340 1.49724 1.59927 2.33536 2.51762 2.72106 3.26299 3.36709 3.63038 3.65569 3.77250 3.89095 3.97570 4.12880 4.30171 4.34173 4.37927 4.41527 4.52366 4.59734 4.60738 4.73939 4.78311 4.82921 4.92108 4.95078 4.98615 5.15716 5.25349 5.29335 5.37133 5.46382 5.60395 5.64423 5.68873 5.76282 6.37228 6.45330 7.12250 7.82219 8.36191 9.19607 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.031734 B = 0.004175 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.110192 B = 6704.923677 C = 6826.734430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.341 6.341 3 C 0.116 3.884 4 C -0.201 4.201 5 C -0.075 4.075 6 C -0.148 4.148 7 C -0.079 4.079 8 C 0.169 3.831 9 F -0.220 7.220 10 C -0.138 4.138 11 C 0.138 3.862 12 N -0.609 5.609 13 C -0.265 4.265 14 H 0.075 0.925 15 C -0.053 4.053 16 N -0.938 5.938 17 Si 0.971 3.029 18 H -0.285 1.285 19 H -0.294 1.294 20 H -0.266 1.266 21 C 0.181 3.819 22 C -0.142 4.142 23 C -0.158 4.158 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.116 0.884 27 H 0.159 0.841 28 H 0.163 0.837 29 H 0.145 0.855 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.007 0.993 33 H 0.070 0.930 34 H 0.250 0.750 35 H 0.061 0.939 36 H -0.009 1.009 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.979 1.106 4.419 22.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.071 3.929 4 C -0.220 4.220 5 C -0.092 4.092 6 C -0.166 4.166 7 C -0.079 4.079 8 C 0.151 3.849 9 F -0.201 7.201 10 C -0.177 4.177 11 C 0.013 3.987 12 N -0.332 5.332 13 C -0.395 4.395 14 H 0.092 0.908 15 C -0.248 4.248 16 N -0.584 5.584 17 Si 0.799 3.201 18 H -0.212 1.212 19 H -0.220 1.220 20 H -0.190 1.190 21 C 0.055 3.945 22 C -0.181 4.181 23 C -0.176 4.176 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.134 0.866 27 H 0.176 0.824 28 H 0.180 0.820 29 H 0.163 0.837 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.025 0.975 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.009 0.991 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -21.773 0.804 4.362 22.221 hybrid contribution 0.987 -0.229 -0.568 1.161 sum -20.787 0.575 3.795 21.138 Atomic orbital electron populations 1.23371 0.76153 1.05584 1.02515 1.86055 1.23785 1.26908 1.88757 1.19031 0.91631 0.85364 0.96895 1.21598 1.01357 0.91585 1.07438 1.21326 0.93766 0.98325 0.95812 1.21313 0.94618 0.97934 1.02762 1.19985 0.93909 0.93973 1.00043 1.19660 0.88991 0.88861 0.87392 1.92791 1.88683 1.70345 1.68245 1.22546 0.97595 0.94257 1.03300 1.21041 0.92287 0.98319 0.87055 1.44310 1.51581 1.18402 1.18909 1.19590 1.10253 0.90268 1.19375 0.90783 1.25888 0.98051 0.97229 1.03618 1.70217 1.36501 1.12279 1.39420 0.85224 0.78388 0.77970 0.78540 1.21160 1.22038 1.19047 1.20395 0.89593 0.85947 0.98588 1.22510 0.98462 1.01840 0.95332 1.20218 0.92551 0.97916 1.06960 0.91316 0.91397 0.86566 0.82367 0.81987 0.83710 0.88967 0.88705 0.97457 0.91201 0.94106 0.92027 0.99080 0.91458 0.90187 0.86953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -8.17 10.50 -92.34 -0.97 -9.14 16 3 C 0.12 3.00 6.69 22.51 0.15 3.15 16 4 C -0.20 -3.94 9.04 22.37 0.20 -3.74 16 5 C -0.07 -1.42 10.04 22.25 0.22 -1.20 16 6 C -0.15 -3.62 9.07 22.28 0.20 -3.42 16 7 C -0.08 -2.42 4.93 -19.88 -0.10 -2.52 16 8 C 0.17 6.18 1.00 -11.51 -0.01 6.17 16 9 F -0.22 -9.25 15.50 44.97 0.70 -8.55 16 10 C -0.14 -4.68 3.93 30.67 0.12 -4.56 16 11 C 0.14 5.94 6.31 86.36 0.55 6.49 16 12 N -0.61 -31.56 3.00 -699.93 -2.10 -33.66 16 13 C -0.26 -14.70 9.58 84.04 0.81 -13.89 16 14 H 0.07 3.91 7.88 -2.91 -0.02 3.89 16 15 C -0.05 -2.98 4.92 84.86 0.42 -2.57 16 16 N -0.94 -56.99 11.18 21.65 0.24 -56.75 16 17 Si 0.97 45.02 29.59 68.60 2.03 47.05 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 19 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 21 C 0.18 9.29 5.08 86.22 0.44 9.72 16 22 C -0.14 -5.80 5.09 30.53 0.16 -5.64 16 23 C -0.16 -4.91 9.25 22.37 0.21 -4.70 16 24 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 25 H 0.07 0.69 7.66 -2.38 -0.02 0.67 16 26 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.16 1.98 6.30 -2.91 -0.02 1.96 16 28 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 29 H 0.15 3.10 5.99 -2.91 -0.02 3.08 16 30 H 0.09 2.64 8.08 -2.39 -0.02 2.62 16 31 H 0.09 2.94 6.95 -2.39 -0.02 2.92 16 32 H 0.01 0.34 7.92 -2.39 -0.02 0.32 16 33 H 0.07 2.80 7.93 -2.39 -0.02 2.78 16 34 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 35 H 0.06 3.51 6.05 -2.39 -0.01 3.50 16 36 H -0.01 -0.51 7.92 -2.38 -0.02 -0.53 16 37 H 0.07 2.61 8.07 -2.39 -0.02 2.60 16 38 H 0.08 3.13 8.14 -2.38 -0.02 3.11 16 39 H 0.11 3.80 8.01 -2.91 -0.02 3.78 16 Total: -1.00 -69.92 314.90 5.41 -64.51 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 1.04 Total: 11.92 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 4.47 Total: -15.37 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -1.86 Total: -90.41 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -0.97 Total: -9.14 kcal Atomic # 9 Polarization: -9.25 SS G_CDS: 0.70 Total: -8.55 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -69.92 5.41 -64.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334239289.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.404 kcal (2) G-P(sol) polarization free energy of solvation -69.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds