Wall clock time and date at job start Tue Mar 31 2020 01:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36937 * 119.99860 * 2 1 4 4 H 1.08006 * 119.99736 * 189.72417 * 3 2 1 5 5 C 1.38813 * 120.00145 * 9.72628 * 3 2 1 6 6 N 1.31618 * 119.99992 * 348.52788 * 5 3 2 7 7 Si 1.86803 * 120.00039 * 168.52844 * 5 3 2 8 8 H 1.48501 * 109.47030 * 0.02562 * 7 5 3 9 9 H 1.48507 * 109.46842 * 119.99732 * 7 5 3 10 10 H 1.48497 * 109.47447 * 239.99768 * 7 5 3 11 11 C 1.46497 * 120.00038 * 179.97438 * 2 1 3 12 12 H 1.08997 * 109.61834 * 355.86037 * 11 2 1 13 13 C 1.53181 * 109.49883 * 235.59437 * 11 2 1 14 14 C 1.53087 * 109.21794 * 297.05444 * 13 11 2 15 15 O 1.42898 * 109.41575 * 302.42504 * 14 13 11 16 16 C 1.42902 * 114.10089 * 61.15582 * 15 14 13 17 17 H 1.09001 * 109.48210 * 58.82120 * 16 15 14 18 18 C 1.50704 * 109.49615 * 178.85641 * 16 15 14 19 19 C 1.38252 * 119.96981 * 39.67190 * 18 16 15 20 20 C 1.38197 * 120.02188 * 179.73245 * 19 18 16 21 21 C 1.38465 * 119.97056 * 0.56317 * 20 19 18 22 22 F 1.35106 * 120.01903 * 179.68743 * 21 20 19 23 23 C 1.38452 * 119.95482 * 359.70985 * 21 20 19 24 24 C 1.38210 * 119.96969 * 359.97438 * 23 21 20 25 25 C 1.53103 * 109.41395 * 298.84387 * 16 15 14 26 26 H 1.08996 * 109.47198 * 174.29912 * 1 2 3 27 27 H 1.08997 * 109.47297 * 294.30568 * 1 2 3 28 28 H 1.09001 * 109.46901 * 54.30350 * 1 2 3 29 29 H 0.96995 * 120.00038 * 179.97438 * 6 5 3 30 30 H 1.09001 * 109.47360 * 177.14682 * 13 11 2 31 31 H 1.09008 * 109.57339 * 57.02416 * 13 11 2 32 32 H 1.08999 * 109.48601 * 182.43854 * 14 13 11 33 33 H 1.09004 * 109.48330 * 62.40459 * 14 13 11 34 34 H 1.07996 * 119.98727 * 359.97438 * 19 18 16 35 35 H 1.07998 * 120.01348 * 180.29538 * 20 19 18 36 36 H 1.07991 * 120.01878 * 180.02562 * 23 21 20 37 37 H 1.07997 * 119.98007 * 180.02562 * 24 23 21 38 38 H 1.08997 * 109.52022 * 177.51258 * 25 16 15 39 39 H 1.08999 * 109.52092 * 297.63858 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.2181 1.1926 -0.1580 5 6 1.4705 2.3794 0.2031 6 7 0.1550 2.4019 0.1703 7 14 2.4238 3.9538 0.5229 8 1 3.8799 3.6623 0.5089 9 1 2.1082 4.9471 -0.5349 10 1 2.0413 4.5036 1.8482 11 6 2.1975 -1.2687 0.0006 12 1 1.4936 -2.0976 0.0751 13 6 3.1597 -1.3030 1.1919 14 6 4.1936 -0.1847 1.0370 15 8 4.8856 -0.3459 -0.2029 16 6 4.0432 -0.2737 -1.3549 17 1 3.5362 0.6910 -1.3747 18 6 4.8789 -0.4280 -2.5995 19 6 5.9185 -1.3389 -2.6248 20 6 6.6820 -1.4852 -3.7674 21 6 6.4128 -0.7107 -4.8831 22 9 7.1626 -0.8484 -5.9985 23 6 5.3750 0.2053 -4.8547 24 6 4.6086 0.3452 -3.7131 25 6 3.0032 -1.3957 -1.2961 26 1 -0.3633 -1.0225 -0.1021 27 1 -0.3634 0.4230 0.9365 28 1 -0.3633 0.5996 -0.8346 29 1 -0.3196 3.2358 0.3126 30 1 3.6676 -2.2670 1.2212 31 1 2.6013 -1.1573 2.1167 32 1 4.9067 -0.2321 1.8600 33 1 3.6888 0.7813 1.0485 34 1 6.1315 -1.9392 -1.7527 35 1 7.4911 -2.2003 -3.7886 36 1 5.1638 0.8097 -5.7244 37 1 3.7988 1.0594 -3.6909 38 1 2.3321 -1.3156 -2.1512 39 1 3.5078 -2.3616 -1.3182 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335996924.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:30 Heat of formation + Delta-G solvation = -3.511192 kcal Electronic energy + Delta-G solvation = -22672.808834 eV Core-core repulsion = 19304.266452 eV Total energy + Delta-G solvation = -3368.542382 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.78827 -39.87680 -38.28517 -35.17214 -32.44242 -32.04438 -30.97156 -29.75252 -28.52045 -26.59391 -24.39746 -23.22931 -22.87267 -21.83627 -20.89555 -19.16310 -17.60466 -17.10532 -16.30494 -15.70143 -15.48697 -15.13392 -14.83998 -14.48829 -13.99457 -13.74726 -13.60517 -13.37161 -13.27182 -12.95079 -12.86316 -12.16139 -11.82060 -11.57948 -11.47904 -11.35571 -10.96187 -10.88732 -10.84944 -10.60730 -10.53224 -10.16287 -10.05617 -10.04030 -9.07777 -8.94461 -8.68581 -8.32194 -7.94718 -6.94854 -5.78622 -3.15962 1.29559 1.40436 3.30633 3.39726 3.40457 3.73332 4.36853 4.38937 4.41968 4.91433 4.99242 5.16575 5.31377 5.37065 5.50630 5.54320 5.68824 5.77698 5.85405 5.95313 6.05024 6.10626 6.25845 6.26892 6.38035 6.39559 6.46260 6.58131 6.65483 6.71092 6.76474 6.84092 6.86568 7.00606 7.07026 7.56811 7.62588 7.86196 7.96592 8.28130 9.15593 9.81731 10.27517 11.21130 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019250 B = 0.005865 C = 0.005291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.181492 B = 4772.581132 C = 5290.881367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.169 3.831 2 N -0.607 5.607 3 C -0.277 4.277 4 H 0.112 0.888 5 C 0.004 3.996 6 N -0.903 5.903 7 Si 0.889 3.111 8 H -0.274 1.274 9 H -0.289 1.289 10 H -0.287 1.287 11 C 0.175 3.825 12 H 0.058 0.942 13 C -0.153 4.153 14 C 0.025 3.975 15 O -0.389 6.389 16 C 0.102 3.898 17 H 0.122 0.878 18 C -0.074 4.074 19 C -0.070 4.070 20 C -0.160 4.160 21 C 0.084 3.916 22 F -0.147 7.147 23 C -0.155 4.155 24 C -0.080 4.080 25 C -0.145 4.145 26 H -0.010 1.010 27 H 0.032 0.968 28 H 0.049 0.951 29 H 0.251 0.749 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.116 0.884 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.065 0.935 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.876 -6.829 -4.650 11.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.331 5.331 3 C -0.404 4.404 4 H 0.129 0.871 5 C -0.195 4.195 6 N -0.549 5.549 7 Si 0.718 3.282 8 H -0.199 1.199 9 H -0.216 1.216 10 H -0.214 1.214 11 C 0.067 3.933 12 H 0.076 0.924 13 C -0.192 4.192 14 C -0.050 4.050 15 O -0.309 6.309 16 C 0.046 3.954 17 H 0.139 0.861 18 C -0.074 4.074 19 C -0.088 4.088 20 C -0.179 4.179 21 C 0.065 3.935 22 F -0.126 7.126 23 C -0.174 4.174 24 C -0.098 4.098 25 C -0.185 4.185 26 H 0.009 0.991 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.133 0.867 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.155 0.845 38 H 0.084 0.916 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.946 -6.715 -4.680 11.408 hybrid contribution 0.324 0.792 0.035 0.856 sum 8.270 -5.923 -4.645 11.183 Atomic orbital electron populations 1.21048 0.81719 0.93153 1.01565 1.44073 1.02082 1.00161 1.86823 1.20021 0.93225 0.84192 1.42991 0.87107 1.24958 0.95571 0.97917 1.01011 1.70249 1.05507 1.25315 1.53817 0.86402 0.79580 0.84067 0.78108 1.19915 1.21591 1.21370 1.20337 0.92167 0.89126 0.91702 0.92420 1.22444 0.98346 0.98073 1.00377 1.23484 0.94606 1.02647 0.84266 1.87741 1.34916 1.94210 1.14042 1.21666 0.89143 1.02404 0.82226 0.86071 1.20079 0.96348 0.95543 0.95456 1.20929 0.93791 0.97252 0.96871 1.21110 1.02405 1.01466 0.92897 1.17717 0.93000 0.99355 0.83444 1.91462 1.75232 1.95155 1.50756 1.21065 0.96349 0.99959 1.00045 1.20978 0.98894 0.98317 0.91649 1.22589 0.97942 0.97219 1.00748 0.99121 0.94955 0.93227 0.93842 0.93282 0.91553 0.91354 0.86714 0.84789 0.85223 0.84961 0.84484 0.91598 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.00 9.01 59.85 0.54 4.54 16 2 N -0.61 -13.96 2.88 -173.27 -0.50 -14.46 16 3 C -0.28 -6.74 5.91 -15.06 -0.09 -6.83 16 4 H 0.11 2.60 2.40 -52.48 -0.13 2.47 16 5 C 0.00 0.09 5.44 -17.43 -0.09 0.00 16 6 N -0.90 -24.65 9.54 55.49 0.53 -24.12 16 7 Si 0.89 20.53 29.57 -169.99 -5.03 15.50 16 8 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 9 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 C 0.18 3.38 3.32 -67.74 -0.23 3.16 16 12 H 0.06 1.06 7.58 -51.93 -0.39 0.67 16 13 C -0.15 -2.74 5.77 -26.59 -0.15 -2.90 16 14 C 0.03 0.47 6.40 37.20 0.24 0.71 16 15 O -0.39 -7.37 9.67 -35.23 -0.34 -7.72 16 16 C 0.10 1.88 2.41 -27.83 -0.07 1.81 16 17 H 0.12 2.56 4.31 -51.93 -0.22 2.34 16 18 C -0.07 -1.21 4.98 -104.62 -0.52 -1.73 16 19 C -0.07 -1.04 9.35 -39.59 -0.37 -1.41 16 20 C -0.16 -2.15 10.03 -39.51 -0.40 -2.55 16 21 C 0.08 1.18 7.30 -39.42 -0.29 0.89 16 22 F -0.15 -2.06 17.27 2.25 0.04 -2.02 16 23 C -0.16 -2.14 10.03 -39.51 -0.40 -2.53 16 24 C -0.08 -1.22 9.67 -39.59 -0.38 -1.60 16 25 C -0.14 -2.59 5.08 -26.58 -0.13 -2.72 16 26 H -0.01 -0.21 7.58 -51.93 -0.39 -0.60 16 27 H 0.03 0.83 7.18 -51.93 -0.37 0.46 16 28 H 0.05 1.28 6.96 -51.93 -0.36 0.92 16 29 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.22 8.14 -51.92 -0.42 0.79 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.12 2.47 4.10 -51.93 -0.21 2.25 16 34 H 0.13 1.88 7.77 -52.49 -0.41 1.48 16 35 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.14 2.01 8.04 -52.49 -0.42 1.59 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 305.99 15.07 4.61 4.61 Total: -1.00 -26.65 305.99 -8.04 -34.68 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.01 Total: 4.67 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -2.34 Total: -11.15 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.03 Total: -38.58 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -0.34 Total: -7.72 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -26.65 -8.04 -34.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335996924.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.172 kcal (2) G-P(sol) polarization free energy of solvation -26.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds