Wall clock time and date at job start Tue Mar 31 2020 01:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36937 * 119.99860 * 2 1 4 4 H 1.08006 * 119.99736 * 189.72417 * 3 2 1 5 5 C 1.38813 * 120.00145 * 9.72628 * 3 2 1 6 6 N 1.31618 * 119.99992 * 348.52788 * 5 3 2 7 7 Si 1.86803 * 120.00039 * 168.52844 * 5 3 2 8 8 H 1.48501 * 109.47030 * 0.02562 * 7 5 3 9 9 H 1.48507 * 109.46842 * 119.99732 * 7 5 3 10 10 H 1.48497 * 109.47447 * 239.99768 * 7 5 3 11 11 C 1.46497 * 120.00038 * 179.97438 * 2 1 3 12 12 H 1.08997 * 109.61834 * 355.86037 * 11 2 1 13 13 C 1.53181 * 109.49883 * 235.59437 * 11 2 1 14 14 C 1.53087 * 109.21794 * 297.05444 * 13 11 2 15 15 O 1.42898 * 109.41575 * 302.42504 * 14 13 11 16 16 C 1.42902 * 114.10089 * 61.15582 * 15 14 13 17 17 H 1.09001 * 109.48210 * 58.82120 * 16 15 14 18 18 C 1.50704 * 109.49615 * 178.85641 * 16 15 14 19 19 C 1.38252 * 119.96981 * 39.67190 * 18 16 15 20 20 C 1.38197 * 120.02188 * 179.73245 * 19 18 16 21 21 C 1.38465 * 119.97056 * 0.56317 * 20 19 18 22 22 F 1.35106 * 120.01903 * 179.68743 * 21 20 19 23 23 C 1.38452 * 119.95482 * 359.70985 * 21 20 19 24 24 C 1.38210 * 119.96969 * 359.97438 * 23 21 20 25 25 C 1.53103 * 109.41395 * 298.84387 * 16 15 14 26 26 H 1.08996 * 109.47198 * 174.29912 * 1 2 3 27 27 H 1.08997 * 109.47297 * 294.30568 * 1 2 3 28 28 H 1.09001 * 109.46901 * 54.30350 * 1 2 3 29 29 H 0.96995 * 120.00038 * 179.97438 * 6 5 3 30 30 H 1.09001 * 109.47360 * 177.14682 * 13 11 2 31 31 H 1.09008 * 109.57339 * 57.02416 * 13 11 2 32 32 H 1.08999 * 109.48601 * 182.43854 * 14 13 11 33 33 H 1.09004 * 109.48330 * 62.40459 * 14 13 11 34 34 H 1.07996 * 119.98727 * 359.97438 * 19 18 16 35 35 H 1.07998 * 120.01348 * 180.29538 * 20 19 18 36 36 H 1.07991 * 120.01878 * 180.02562 * 23 21 20 37 37 H 1.07997 * 119.98007 * 180.02562 * 24 23 21 38 38 H 1.08997 * 109.52022 * 177.51258 * 25 16 15 39 39 H 1.08999 * 109.52092 * 297.63858 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.2181 1.1926 -0.1580 5 6 1.4705 2.3794 0.2031 6 7 0.1550 2.4019 0.1703 7 14 2.4238 3.9538 0.5229 8 1 3.8799 3.6623 0.5089 9 1 2.1082 4.9471 -0.5349 10 1 2.0413 4.5036 1.8482 11 6 2.1975 -1.2687 0.0006 12 1 1.4936 -2.0976 0.0751 13 6 3.1597 -1.3030 1.1919 14 6 4.1936 -0.1847 1.0370 15 8 4.8856 -0.3459 -0.2029 16 6 4.0432 -0.2737 -1.3549 17 1 3.5362 0.6910 -1.3747 18 6 4.8789 -0.4280 -2.5995 19 6 5.9185 -1.3389 -2.6248 20 6 6.6820 -1.4852 -3.7674 21 6 6.4128 -0.7107 -4.8831 22 9 7.1626 -0.8484 -5.9985 23 6 5.3750 0.2053 -4.8547 24 6 4.6086 0.3452 -3.7131 25 6 3.0032 -1.3957 -1.2961 26 1 -0.3633 -1.0225 -0.1021 27 1 -0.3634 0.4230 0.9365 28 1 -0.3633 0.5996 -0.8346 29 1 -0.3196 3.2358 0.3126 30 1 3.6676 -2.2670 1.2212 31 1 2.6013 -1.1573 2.1167 32 1 4.9067 -0.2321 1.8600 33 1 3.6888 0.7813 1.0485 34 1 6.1315 -1.9392 -1.7527 35 1 7.4911 -2.2003 -3.7886 36 1 5.1638 0.8097 -5.7244 37 1 3.7988 1.0594 -3.6909 38 1 2.3321 -1.3156 -2.1512 39 1 3.5078 -2.3616 -1.3182 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335996924.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:29 Heat of formation + Delta-G solvation = -16.610545 kcal Electronic energy + Delta-G solvation = -22673.376864 eV Core-core repulsion = 19304.266452 eV Total energy + Delta-G solvation = -3369.110412 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.87683 -41.31118 -39.54294 -36.87185 -34.16772 -33.36867 -32.07471 -31.51782 -29.85147 -28.45346 -25.98896 -24.62851 -24.04789 -23.49685 -22.23139 -20.77127 -18.98435 -18.56233 -17.53761 -17.12754 -16.64963 -16.58321 -16.38420 -15.92662 -15.43982 -15.25242 -15.18341 -15.06463 -14.43376 -14.24192 -14.10355 -13.62922 -13.44067 -13.17511 -13.08049 -12.78455 -12.70908 -12.62454 -12.36283 -12.08882 -11.97601 -11.90847 -11.84376 -11.54439 -10.64764 -10.47346 -10.03678 -9.76980 -9.40827 -8.83789 -7.73812 -5.10382 0.14588 0.30721 1.43756 1.48900 1.54750 2.50749 2.57561 3.01402 3.28762 3.32012 3.66604 3.84062 3.89701 4.00046 4.14949 4.29202 4.35928 4.40610 4.46856 4.56102 4.64303 4.83990 4.90749 4.96001 5.00255 5.06680 5.14282 5.16432 5.18820 5.22090 5.32430 5.36170 5.40479 5.60884 5.64287 5.75482 5.90269 5.94965 6.34612 6.48676 7.21377 7.95674 8.36614 9.26120 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019250 B = 0.005865 C = 0.005291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.181492 B = 4772.581132 C = 5290.881367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.618 5.618 3 C -0.254 4.254 4 H 0.124 0.876 5 C -0.057 4.057 6 N -0.938 5.938 7 Si 0.939 3.061 8 H -0.263 1.263 9 H -0.297 1.297 10 H -0.295 1.295 11 C 0.165 3.835 12 H 0.071 0.929 13 C -0.146 4.146 14 C 0.025 3.975 15 O -0.389 6.389 16 C 0.108 3.892 17 H 0.088 0.912 18 C -0.092 4.092 19 C -0.071 4.071 20 C -0.152 4.152 21 C 0.080 3.920 22 F -0.146 7.146 23 C -0.152 4.152 24 C -0.091 4.091 25 C -0.136 4.136 26 H 0.019 0.981 27 H 0.005 0.995 28 H 0.021 0.979 29 H 0.241 0.759 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.144 0.856 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.132 0.868 38 H 0.057 0.943 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.156 -8.685 -5.130 14.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.342 5.342 3 C -0.382 4.382 4 H 0.141 0.859 5 C -0.251 4.251 6 N -0.588 5.588 7 Si 0.769 3.231 8 H -0.188 1.188 9 H -0.225 1.225 10 H -0.223 1.223 11 C 0.058 3.942 12 H 0.089 0.911 13 C -0.185 4.185 14 C -0.050 4.050 15 O -0.309 6.309 16 C 0.051 3.949 17 H 0.105 0.895 18 C -0.092 4.092 19 C -0.089 4.089 20 C -0.170 4.170 21 C 0.061 3.939 22 F -0.125 7.125 23 C -0.171 4.171 24 C -0.110 4.110 25 C -0.176 4.176 26 H 0.037 0.963 27 H 0.023 0.977 28 H 0.039 0.961 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.161 0.839 35 H 0.174 0.826 36 H 0.169 0.831 37 H 0.150 0.850 38 H 0.075 0.925 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.267 -8.601 -5.164 14.355 hybrid contribution -0.303 1.261 0.121 1.302 sum 9.965 -7.340 -5.042 13.364 Atomic orbital electron populations 1.20728 0.82501 0.93946 0.98963 1.44322 1.02003 1.01349 1.86545 1.20462 0.93825 0.84507 1.39417 0.85939 1.25554 0.96211 1.00428 1.02901 1.70421 1.06585 1.25042 1.56733 0.85582 0.79101 0.81373 0.77022 1.18770 1.22492 1.22266 1.20640 0.92802 0.87661 0.93136 0.91083 1.22352 0.97768 0.99187 0.99180 1.23375 0.95340 1.01201 0.85114 1.87756 1.35006 1.94043 1.14094 1.21400 0.89590 1.00756 0.83122 0.89472 1.19977 0.97312 0.97146 0.94766 1.20995 0.93288 0.96916 0.97679 1.21350 1.02450 1.01288 0.91956 1.17862 0.92961 0.99414 0.83710 1.91471 1.75147 1.95129 1.50718 1.21235 0.95815 0.99930 1.00128 1.21003 0.99331 0.98516 0.92107 1.22460 0.97555 0.98235 0.99346 0.96262 0.97673 0.96091 0.94912 0.90387 0.92123 0.88917 0.89911 0.83870 0.82568 0.83058 0.84975 0.92454 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.81 9.01 127.77 1.15 9.96 16 2 N -0.62 -28.34 2.88 -702.11 -2.02 -30.36 16 3 C -0.25 -12.46 5.91 84.03 0.50 -11.96 16 4 H 0.12 5.74 2.40 -2.91 -0.01 5.74 16 5 C -0.06 -3.04 5.44 84.86 0.46 -2.58 16 6 N -0.94 -53.37 9.54 21.65 0.21 -53.17 16 7 Si 0.94 43.41 29.57 68.60 2.03 45.44 16 8 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 9 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 10 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 11 C 0.16 6.04 3.32 45.11 0.15 6.19 16 12 H 0.07 2.42 7.58 -2.39 -0.02 2.40 16 13 C -0.15 -4.84 5.77 30.68 0.18 -4.66 16 14 C 0.03 0.89 6.40 72.01 0.46 1.35 16 15 O -0.39 -13.83 9.67 -148.98 -1.44 -15.27 16 16 C 0.11 3.82 2.41 29.88 0.07 3.89 16 17 H 0.09 3.68 4.31 -2.39 -0.01 3.67 16 18 C -0.09 -2.82 4.98 -19.86 -0.10 -2.92 16 19 C -0.07 -1.87 9.35 22.26 0.21 -1.66 16 20 C -0.15 -3.56 10.03 22.31 0.22 -3.34 16 21 C 0.08 2.01 7.30 22.38 0.16 2.17 16 22 F -0.15 -3.66 17.27 44.97 0.78 -2.88 16 23 C -0.15 -3.88 10.03 22.31 0.22 -3.65 16 24 C -0.09 -2.66 9.67 22.26 0.22 -2.45 16 25 C -0.14 -4.58 5.08 30.69 0.16 -4.43 16 26 H 0.02 0.79 7.58 -2.39 -0.02 0.77 16 27 H 0.00 0.26 7.18 -2.39 -0.02 0.24 16 28 H 0.02 1.11 6.96 -2.39 -0.02 1.09 16 29 H 0.24 13.56 8.31 -92.71 -0.77 12.79 16 30 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.08 3.49 4.10 -2.38 -0.01 3.48 16 34 H 0.14 3.50 7.77 -2.91 -0.02 3.48 16 35 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 36 H 0.15 3.17 8.06 -2.92 -0.02 3.15 16 37 H 0.13 3.88 8.04 -2.91 -0.02 3.86 16 38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -57.57 305.99 4.67 -52.90 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 1.06 Total: 17.44 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 4.06 Total: -14.10 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -1.81 Total: -83.53 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -1.44 Total: -15.27 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.78 Total: -2.88 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -57.57 4.67 -52.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335996924.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.285 kcal (2) G-P(sol) polarization free energy of solvation -57.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds