Wall clock time and date at job start Tue Mar 31 2020 01:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 116.99877 * 2 1 4 4 C 1.38922 * 119.68072 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.10926 * 180.02562 * 4 3 2 6 6 C 1.38824 * 118.48587 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.35477 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.46784 * 90.00060 * 7 6 5 9 9 C 1.34772 * 119.99479 * 179.97438 * 8 7 6 10 10 O 1.21581 * 120.00428 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99529 * 179.97438 * 9 8 7 12 12 C 1.46505 * 119.99772 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46853 * 180.02562 * 12 11 9 14 14 C 1.50704 * 109.46759 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00155 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99448 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00310 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99706 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47328 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47378 * 120.00210 * 18 16 14 21 21 H 1.48508 * 109.47207 * 240.00326 * 18 16 14 22 22 C 1.38046 * 119.29263 * 0.02562 * 6 5 4 23 23 N 1.31967 * 120.83264 * 0.02562 * 22 6 5 24 24 H 1.08993 * 109.47543 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46923 * 300.00138 * 1 2 3 26 26 H 1.09006 * 109.46668 * 59.99889 * 1 2 3 27 27 H 1.07997 * 120.44530 * 0.27676 * 4 3 2 28 28 H 1.08003 * 120.75576 * 180.02562 * 5 4 3 29 29 H 1.08997 * 109.47154 * 209.99640 * 7 6 5 30 30 H 1.08996 * 109.47157 * 330.00474 * 7 6 5 31 31 H 0.96998 * 119.99730 * 0.02562 * 8 7 6 32 32 H 0.96999 * 120.00512 * 0.02562 * 11 9 8 33 33 H 1.09003 * 109.46705 * 299.99888 * 12 11 9 34 34 H 1.08993 * 109.46947 * 60.00066 * 12 11 9 35 35 H 1.09006 * 109.46806 * 299.99715 * 13 12 11 36 36 H 1.08998 * 109.47536 * 59.99558 * 13 12 11 37 37 H 0.97006 * 119.99835 * 179.97438 * 17 16 14 38 38 H 1.07994 * 119.58392 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5131 0.0011 6 6 3.2506 3.6491 0.0016 7 6 3.8769 5.0198 0.0016 8 7 4.0793 5.4642 -1.3797 9 6 4.6295 6.6696 -1.6259 10 8 4.9582 7.3880 -0.7018 11 7 4.8161 7.0782 -2.8966 12 6 5.4147 8.3883 -3.1644 13 6 5.5129 8.6048 -4.6758 14 6 6.1292 9.9523 -4.9511 15 1 6.4211 10.5904 -4.1303 16 6 6.3202 10.3702 -6.2511 17 7 5.9642 9.5932 -7.2507 18 14 7.0834 12.0406 -6.5925 19 1 7.3914 12.7163 -5.3065 20 1 8.3353 11.8630 -7.3711 21 1 6.1296 12.8708 -7.3713 22 6 1.8772 3.5097 0.0021 23 7 1.3187 2.3141 0.0026 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 4.0229 0.3694 -0.0035 28 1 5.1255 2.5946 0.0011 29 1 3.2187 5.7201 0.5158 30 1 4.8376 4.9803 0.5150 31 1 3.8167 4.8911 -2.1169 32 1 4.5542 6.5049 -3.6339 33 1 4.7925 9.1684 -2.7255 34 1 6.4116 8.4288 -2.7256 35 1 6.1348 7.8247 -5.1149 36 1 4.5158 8.5644 -5.1142 37 1 6.0983 9.8874 -8.1653 38 1 1.2519 4.3902 0.0029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343595208.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:31 Heat of formation + Delta-G solvation = -41.095642 kcal Electronic energy + Delta-G solvation = -20189.305884 eV Core-core repulsion = 16839.053680 eV Total energy + Delta-G solvation = -3350.252204 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.04312 -39.56327 -38.35917 -35.33360 -34.51528 -32.91986 -32.70033 -31.37821 -29.44707 -27.86549 -26.07645 -24.44648 -23.81057 -22.23938 -21.03755 -20.55533 -18.77345 -18.18359 -17.48695 -16.46220 -16.33701 -16.07911 -15.32054 -15.16537 -14.83688 -14.63725 -14.49601 -14.05263 -13.70295 -13.50844 -13.47884 -13.37494 -12.58777 -12.32812 -12.27804 -11.93088 -11.55148 -11.17079 -11.04235 -10.60939 -10.32005 -10.31372 -10.01255 -9.95465 -9.56629 -9.24899 -9.04949 -8.82110 -8.48323 -8.24360 -6.08683 -4.11135 0.71404 0.86194 2.71345 3.02372 3.29095 3.36704 3.41905 3.50775 3.58710 3.93692 4.36682 4.40837 4.59522 4.60296 4.72316 4.78515 4.93477 4.95560 5.20971 5.26284 5.28571 5.46729 5.50428 5.61358 5.95275 6.03990 6.30175 6.40929 6.54567 6.78726 6.83137 7.00551 7.22789 7.45782 7.57919 7.64255 7.90800 8.26583 8.43181 8.93660 8.99699 9.53651 11.03021 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.037815 B = 0.002387 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.267919 B =11726.986924 C =12095.543105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.309 6.309 3 C 0.322 3.678 4 C -0.192 4.192 5 C -0.021 4.021 6 C -0.194 4.194 7 C 0.192 3.808 8 N -0.752 5.752 9 C 0.699 3.301 10 O -0.598 6.598 11 N -0.738 5.738 12 C 0.140 3.860 13 C 0.012 3.988 14 C -0.519 4.519 15 H 0.060 0.940 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.161 3.839 23 N -0.541 5.541 24 H 0.096 0.904 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.143 0.857 28 H 0.145 0.855 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.394 0.606 32 H 0.393 0.607 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.261 0.739 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.172 -19.772 14.016 25.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.216 6.216 3 C 0.143 3.857 4 C -0.212 4.212 5 C -0.046 4.046 6 C -0.197 4.197 7 C 0.067 3.933 8 N -0.409 5.409 9 C 0.398 3.602 10 O -0.477 6.477 11 N -0.392 5.392 12 C 0.017 3.983 13 C -0.025 4.025 14 C -0.558 4.558 15 H 0.079 0.921 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.725 3.275 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.210 1.210 22 C 0.005 3.995 23 N -0.264 5.264 24 H 0.114 0.886 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.161 0.839 28 H 0.163 0.837 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.228 0.772 32 H 0.226 0.774 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.665 -19.428 14.689 26.203 hybrid contribution 0.741 0.430 -1.060 1.363 sum -8.924 -18.997 13.629 25.025 Atomic orbital electron populations 1.22880 0.77026 1.03021 1.02621 1.86243 1.23111 1.24590 1.87628 1.19935 0.89504 0.84770 0.91445 1.21094 0.91980 0.99645 1.08508 1.21427 1.00844 0.90568 0.91808 1.20799 0.94926 0.96197 1.07778 1.19760 1.00466 0.89784 0.83286 1.45211 1.68791 1.18919 1.07982 1.16054 0.78717 0.81238 0.84144 1.90893 1.57768 1.55434 1.43579 1.45545 1.66638 1.21931 1.05052 1.21596 0.96438 0.80401 0.99844 1.19335 0.97776 0.97667 0.87752 1.21096 1.40742 1.01753 0.92230 0.92137 1.25005 0.95578 0.97577 0.96231 1.69968 1.47684 1.36824 0.98893 0.86454 0.78881 0.83815 0.78399 1.19556 1.20964 1.20963 1.22418 0.92209 0.93688 0.91223 1.67384 1.40804 0.98739 1.19508 0.88580 0.92212 0.92149 0.83904 0.83702 0.90643 0.90716 0.77219 0.77387 0.92753 0.92756 0.95983 0.95972 0.92927 0.82029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.38 101.05 1.05 1.32 16 2 O -0.31 -2.91 10.48 -18.72 -0.20 -3.11 16 3 C 0.32 3.20 7.49 -17.12 -0.13 3.07 16 4 C -0.19 -1.59 10.04 -39.27 -0.39 -1.99 16 5 C -0.02 -0.16 9.85 -39.31 -0.39 -0.55 16 6 C -0.19 -1.67 5.26 -104.47 -0.55 -2.22 16 7 C 0.19 1.97 5.82 -5.19 -0.03 1.94 16 8 N -0.75 -9.08 5.55 -66.41 -0.37 -9.45 16 9 C 0.70 11.92 8.57 -86.92 -0.74 11.17 16 10 O -0.60 -12.60 16.34 5.29 0.09 -12.51 16 11 N -0.74 -12.92 5.56 -65.22 -0.36 -13.28 16 12 C 0.14 3.00 5.61 -4.04 -0.02 2.98 16 13 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 14 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 15 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 18 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.16 1.45 10.85 -17.56 -0.19 1.26 16 23 N -0.54 -5.52 9.22 -13.33 -0.12 -5.64 16 24 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 26 H 0.06 0.42 8.11 -51.93 -0.42 0.00 16 27 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 28 H 0.15 0.88 8.06 -52.48 -0.42 0.46 16 29 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 30 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 31 H 0.39 3.92 8.48 -40.82 -0.35 3.58 16 32 H 0.39 5.93 8.49 -40.82 -0.35 5.58 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 335.12 15.07 5.05 5.05 Total: -1.00 -33.57 335.12 -7.45 -41.02 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.30 Total: 3.05 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -1.95 Total: 3.92 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.12 Total: -53.80 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.11 Total: -15.62 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.57 -7.45 -41.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343595208.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.076 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds