Wall clock time and date at job start Tue Mar 31 2020 01:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 116.99877 * 2 1 4 4 C 1.38922 * 119.68072 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.10926 * 180.02562 * 4 3 2 6 6 C 1.38824 * 118.48587 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.35477 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.46784 * 90.00060 * 7 6 5 9 9 C 1.34772 * 119.99479 * 179.97438 * 8 7 6 10 10 O 1.21581 * 120.00428 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99529 * 179.97438 * 9 8 7 12 12 C 1.46505 * 119.99772 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46853 * 180.02562 * 12 11 9 14 14 C 1.50704 * 109.46759 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00155 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99448 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00310 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99706 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47328 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47378 * 120.00210 * 18 16 14 21 21 H 1.48508 * 109.47207 * 240.00326 * 18 16 14 22 22 C 1.38046 * 119.29263 * 0.02562 * 6 5 4 23 23 N 1.31967 * 120.83264 * 0.02562 * 22 6 5 24 24 H 1.08993 * 109.47543 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46923 * 300.00138 * 1 2 3 26 26 H 1.09006 * 109.46668 * 59.99889 * 1 2 3 27 27 H 1.07997 * 120.44530 * 0.27676 * 4 3 2 28 28 H 1.08003 * 120.75576 * 180.02562 * 5 4 3 29 29 H 1.08997 * 109.47154 * 209.99640 * 7 6 5 30 30 H 1.08996 * 109.47157 * 330.00474 * 7 6 5 31 31 H 0.96998 * 119.99730 * 0.02562 * 8 7 6 32 32 H 0.96999 * 120.00512 * 0.02562 * 11 9 8 33 33 H 1.09003 * 109.46705 * 299.99888 * 12 11 9 34 34 H 1.08993 * 109.46947 * 60.00066 * 12 11 9 35 35 H 1.09006 * 109.46806 * 299.99715 * 13 12 11 36 36 H 1.08998 * 109.47536 * 59.99558 * 13 12 11 37 37 H 0.97006 * 119.99835 * 179.97438 * 17 16 14 38 38 H 1.07994 * 119.58392 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5131 0.0011 6 6 3.2506 3.6491 0.0016 7 6 3.8769 5.0198 0.0016 8 7 4.0793 5.4642 -1.3797 9 6 4.6295 6.6696 -1.6259 10 8 4.9582 7.3880 -0.7018 11 7 4.8161 7.0782 -2.8966 12 6 5.4147 8.3883 -3.1644 13 6 5.5129 8.6048 -4.6758 14 6 6.1292 9.9523 -4.9511 15 1 6.4211 10.5904 -4.1303 16 6 6.3202 10.3702 -6.2511 17 7 5.9642 9.5932 -7.2507 18 14 7.0834 12.0406 -6.5925 19 1 7.3914 12.7163 -5.3065 20 1 8.3353 11.8630 -7.3711 21 1 6.1296 12.8708 -7.3713 22 6 1.8772 3.5097 0.0021 23 7 1.3187 2.3141 0.0026 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 4.0229 0.3694 -0.0035 28 1 5.1255 2.5946 0.0011 29 1 3.2187 5.7201 0.5158 30 1 4.8376 4.9803 0.5150 31 1 3.8167 4.8911 -2.1169 32 1 4.5542 6.5049 -3.6339 33 1 4.7925 9.1684 -2.7255 34 1 6.4116 8.4288 -2.7256 35 1 6.1348 7.8247 -5.1149 36 1 4.5158 8.5644 -5.1142 37 1 6.0983 9.8874 -8.1653 38 1 1.2519 4.3902 0.0029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343595208.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:30 Heat of formation + Delta-G solvation = -66.914240 kcal Electronic energy + Delta-G solvation = -20190.425463 eV Core-core repulsion = 16839.053680 eV Total energy + Delta-G solvation = -3351.371783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.74360 -40.87563 -39.07417 -36.75987 -35.87371 -34.79316 -33.51073 -32.36831 -31.11951 -28.53428 -27.21133 -26.08866 -24.46845 -23.17973 -22.70650 -21.93433 -19.53555 -19.40866 -18.40877 -18.16787 -17.38845 -16.98850 -16.66428 -16.48401 -16.08191 -15.54050 -15.41585 -15.27371 -15.04298 -14.87529 -14.34434 -14.21642 -14.07070 -13.73600 -13.18256 -12.96770 -12.91175 -12.60774 -12.49232 -12.21457 -12.18078 -11.66036 -11.48818 -11.23185 -10.91607 -10.70027 -10.59626 -10.31086 -9.68637 -9.52538 -8.22765 -6.32651 0.01114 0.21498 1.42310 1.43356 1.56479 1.85165 2.11637 2.20844 2.42639 2.73376 3.12227 3.29006 3.48791 3.63316 3.92154 3.97031 4.15840 4.42485 4.44355 4.50175 4.55223 4.58000 4.71658 4.77019 4.78774 4.90218 4.90882 5.26306 5.34210 5.40003 5.48945 5.54825 5.62213 5.81235 6.06225 6.18358 6.19377 6.77425 6.81192 7.14942 7.36735 7.63031 8.89334 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.037815 B = 0.002387 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.267919 B =11726.986924 C =12095.543105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.320 6.320 3 C 0.306 3.694 4 C -0.193 4.193 5 C -0.015 4.015 6 C -0.191 4.191 7 C 0.195 3.805 8 N -0.730 5.730 9 C 0.699 3.301 10 O -0.638 6.638 11 N -0.734 5.734 12 C 0.160 3.840 13 C 0.023 3.977 14 C -0.544 4.544 15 H 0.060 0.940 16 C 0.005 3.995 17 N -0.927 5.927 18 Si 0.965 3.035 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.277 1.277 22 C 0.155 3.845 23 N -0.558 5.558 24 H 0.122 0.878 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.161 0.839 28 H 0.165 0.835 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.408 0.592 32 H 0.406 0.594 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.008 0.992 36 H 0.008 0.992 37 H 0.265 0.735 38 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.003 -20.310 14.348 26.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.227 6.227 3 C 0.127 3.873 4 C -0.213 4.213 5 C -0.041 4.041 6 C -0.194 4.194 7 C 0.071 3.929 8 N -0.387 5.387 9 C 0.399 3.601 10 O -0.520 6.520 11 N -0.389 5.389 12 C 0.036 3.964 13 C -0.015 4.015 14 C -0.582 4.582 15 H 0.078 0.922 16 C -0.193 4.193 17 N -0.567 5.567 18 Si 0.790 3.210 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.001 4.001 23 N -0.282 5.282 24 H 0.140 0.860 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.178 0.822 28 H 0.183 0.817 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.244 0.756 32 H 0.241 0.759 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.027 0.973 36 H 0.026 0.974 37 H 0.074 0.926 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -9.527 -20.030 15.020 26.788 hybrid contribution 0.632 0.500 -1.134 1.391 sum -8.895 -19.530 13.887 25.561 Atomic orbital electron populations 1.23045 0.75904 1.04630 1.02208 1.86230 1.24324 1.24554 1.87608 1.20267 0.90301 0.84886 0.91802 1.21333 0.91568 1.00545 1.07898 1.21662 1.01796 0.90017 0.90623 1.20597 0.94788 0.95493 1.08523 1.19811 1.00648 0.90592 0.81884 1.45057 1.66975 1.17194 1.09486 1.16123 0.78642 0.82164 0.83146 1.90869 1.59532 1.57008 1.44593 1.45234 1.66708 1.20900 1.06052 1.21066 0.96017 0.82122 0.97183 1.19138 0.96294 0.96257 0.89773 1.21508 1.41113 1.03035 0.92586 0.92218 1.25879 0.95968 1.01447 0.96029 1.70067 1.48588 1.38684 0.99367 0.85390 0.78100 0.79115 0.78396 1.18904 1.20272 1.20307 1.22635 0.92636 0.93807 0.90980 1.67386 1.41380 0.99156 1.20234 0.86027 0.92484 0.92658 0.82178 0.81724 0.90794 0.90640 0.75628 0.75872 0.93786 0.93729 0.97322 0.97361 0.92593 0.80947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.38 113.37 1.18 1.64 16 2 O -0.32 -5.72 10.48 -89.90 -0.94 -6.66 16 3 C 0.31 5.72 7.49 84.79 0.63 6.36 16 4 C -0.19 -2.85 10.04 22.47 0.23 -2.63 16 5 C -0.02 -0.21 9.85 22.45 0.22 0.01 16 6 C -0.19 -2.95 5.26 -19.77 -0.10 -3.06 16 7 C 0.19 3.67 5.82 85.63 0.50 4.17 16 8 N -0.73 -16.42 5.55 -482.30 -2.68 -19.09 16 9 C 0.70 23.18 8.57 179.06 1.53 24.72 16 10 O -0.64 -26.59 16.34 -3.97 -0.06 -26.65 16 11 N -0.73 -25.24 5.56 -478.53 -2.66 -27.90 16 12 C 0.16 6.91 5.61 86.38 0.48 7.39 16 13 C 0.02 1.15 5.09 29.85 0.15 1.30 16 14 C -0.54 -30.35 9.11 25.60 0.23 -30.11 16 15 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 16 C 0.01 0.30 5.46 84.66 0.46 0.76 16 17 N -0.93 -54.31 13.29 21.45 0.28 -54.02 16 18 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 19 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 22 C 0.16 2.60 10.85 84.63 0.92 3.52 16 23 N -0.56 -10.86 9.22 -308.95 -2.85 -13.70 16 24 H 0.12 0.83 8.14 -2.39 -0.02 0.82 16 25 H 0.06 0.73 8.10 -2.39 -0.02 0.72 16 26 H 0.05 0.74 8.11 -2.38 -0.02 0.72 16 27 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 28 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 29 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16 30 H 0.08 1.47 8.09 -2.39 -0.02 1.45 16 31 H 0.41 7.24 8.48 -92.71 -0.79 6.46 16 32 H 0.41 11.86 8.49 -92.71 -0.79 11.07 16 33 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 36 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.27 14.56 8.31 -92.70 -0.77 13.79 16 38 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -71.20 335.12 -0.93 -72.14 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -0.49 Total: 16.19 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 6.44 Total: 14.08 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -7.90 Total: -114.72 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -1.01 Total: -33.31 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -71.20 -0.93 -72.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343595208.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.224 kcal (2) G-P(sol) polarization free energy of solvation -71.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds