Wall clock time and date at job start Tue Mar 31 2020 01:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35944 * 117.00244 * 2 1 4 4 C 1.38726 * 120.02650 * 359.72617 * 3 2 1 5 5 C 1.38136 * 119.96955 * 179.70178 * 4 3 2 6 6 C 1.38478 * 120.02570 * 0.56798 * 5 4 3 7 7 F 1.35095 * 119.96861 * 179.74667 * 6 5 4 8 8 C 1.38436 * 120.06214 * 359.72811 * 6 5 4 9 9 C 1.38173 * 120.02875 * 359.97394 * 8 6 5 10 10 C 1.50697 * 120.01279 * 179.97438 * 9 8 6 11 11 N 1.46896 * 109.47631 * 258.29834 * 10 9 8 12 12 C 1.46890 * 111.00324 * 183.16336 * 11 10 9 13 13 C 1.53002 * 109.47423 * 184.83533 * 12 11 10 14 14 C 1.50701 * 115.54863 * 64.78414 * 13 12 11 15 15 H 1.08002 * 119.99784 * 266.66193 * 14 13 12 16 16 C 1.37876 * 119.99919 * 86.65892 * 14 13 12 17 17 N 1.31520 * 119.99906 * 178.76446 * 16 14 13 18 18 Si 1.86799 * 120.00415 * 358.76292 * 16 14 13 19 19 H 1.48502 * 109.46939 * 90.40528 * 18 16 14 20 20 H 1.48497 * 109.47255 * 210.41036 * 18 16 14 21 21 H 1.48501 * 109.46906 * 330.41199 * 18 16 14 22 22 C 1.52997 * 117.49907 * 279.11697 * 13 12 11 23 23 C 1.52997 * 117.50075 * 210.45403 * 13 12 11 24 24 H 1.08998 * 109.47442 * 300.00028 * 1 2 3 25 25 H 1.08995 * 109.47347 * 60.00394 * 1 2 3 26 26 H 1.09008 * 109.47226 * 179.97438 * 1 2 3 27 27 H 1.08006 * 120.01794 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.98600 * 180.27469 * 5 4 3 29 29 H 1.07995 * 119.98403 * 179.97438 * 8 6 5 30 30 H 1.09003 * 109.47013 * 18.30205 * 10 9 8 31 31 H 1.09001 * 109.46891 * 138.30005 * 10 9 8 32 32 H 1.00900 * 110.99781 * 307.12383 * 11 10 9 33 33 H 1.09007 * 109.47371 * 304.83874 * 12 11 10 34 34 H 1.09009 * 109.47159 * 64.83696 * 12 11 10 35 35 H 0.96993 * 120.00425 * 179.97438 * 17 16 14 36 36 H 1.08998 * 117.49817 * 359.97438 * 22 13 12 37 37 H 1.08995 * 117.50325 * 145.01932 * 22 13 12 38 38 H 1.09003 * 117.50243 * 214.98254 * 23 13 12 39 39 H 1.09005 * 117.49930 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2912 2.3751 -0.0057 5 6 1.9195 3.6052 0.0005 6 6 3.3025 3.6769 0.0006 7 9 3.9158 4.8806 0.0015 8 6 4.0571 2.5163 0.0001 9 6 3.4310 1.2845 0.0001 10 6 4.2528 0.0214 -0.0010 11 7 4.2835 -0.5418 -1.3574 12 6 5.0142 -1.8158 -1.3821 13 6 5.1290 -2.3101 -2.8255 14 6 5.9480 -1.4427 -3.7463 15 1 5.4655 -0.6832 -4.3437 16 6 7.3131 -1.6186 -3.8261 17 7 8.0247 -0.8780 -4.6477 18 14 8.1522 -2.9087 -2.7673 19 1 8.2017 -4.1974 -3.5035 20 1 9.5338 -2.4664 -2.4499 21 1 7.3878 -3.0879 -1.5068 22 6 3.9191 -3.0303 -3.4239 23 6 5.1753 -3.8224 -3.0528 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 0.2126 2.3194 -0.0106 28 1 1.3320 4.5114 0.0005 29 1 5.1355 2.5737 -0.0002 30 1 5.2690 0.2487 0.3211 31 1 3.8082 -0.7019 0.6827 32 1 3.3500 -0.6532 -1.7238 33 1 6.0118 -1.6707 -0.9673 34 1 4.4771 -2.5544 -0.7868 35 1 8.9851 -1.0015 -4.7036 36 1 3.0414 -3.1524 -2.7892 37 1 3.7156 -2.8772 -4.4837 38 1 5.7978 -4.1900 -3.8686 39 1 5.1244 -4.4653 -2.1740 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361137333.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:31 Heat of formation + Delta-G solvation = -26.299013 kcal Electronic energy + Delta-G solvation = -21593.728300 eV Core-core repulsion = 18224.197764 eV Total energy + Delta-G solvation = -3369.530536 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.75971 -40.30304 -37.52479 -37.15014 -34.70820 -31.92731 -31.33843 -29.78041 -27.50463 -26.63142 -25.32847 -23.32944 -22.39483 -21.64210 -21.19534 -18.86347 -18.12063 -17.10361 -17.01859 -16.21458 -15.95024 -15.37585 -15.19851 -14.75328 -14.56668 -14.32393 -14.07663 -13.87816 -13.37733 -13.01034 -12.92831 -12.57987 -12.41151 -12.13544 -11.97414 -11.67134 -11.56457 -11.03317 -10.99721 -10.78690 -10.46464 -10.37661 -9.99469 -9.50070 -9.09447 -8.93704 -8.44020 -8.38824 -8.10110 -7.59295 -5.94481 -3.93367 1.11545 1.19931 3.14054 3.37077 3.45884 3.49173 3.50683 4.27977 4.53751 4.54497 4.66144 4.77361 4.90839 4.98105 5.06554 5.20065 5.25925 5.30554 5.33848 5.52467 5.61804 5.74182 5.92154 6.00847 6.03554 6.08897 6.13856 6.23561 6.27066 6.43990 6.50138 6.54953 6.69781 6.79329 7.13970 7.23301 7.26257 7.77976 7.87282 8.11757 8.69366 9.11655 9.69019 11.18341 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018069 B = 0.005041 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.277518 B = 5552.895537 C = 6564.090946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.122 3.878 4 C -0.183 4.183 5 C -0.120 4.120 6 C 0.060 3.940 7 F -0.143 7.143 8 C -0.094 4.094 9 C -0.072 4.072 10 C 0.104 3.896 11 N -0.658 5.658 12 C 0.100 3.900 13 C 0.009 3.991 14 C -0.460 4.460 15 H 0.078 0.922 16 C 0.073 3.927 17 N -0.904 5.904 18 Si 0.879 3.121 19 H -0.282 1.282 20 H -0.297 1.297 21 H -0.261 1.261 22 C -0.183 4.183 23 C -0.204 4.204 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.100 0.900 27 H 0.135 0.865 28 H 0.134 0.866 29 H 0.145 0.855 30 H 0.079 0.921 31 H 0.036 0.964 32 H 0.338 0.662 33 H 0.068 0.932 34 H 0.003 0.997 35 H 0.261 0.739 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.927 4.065 12.447 19.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.076 3.924 4 C -0.202 4.202 5 C -0.139 4.139 6 C 0.041 3.959 7 F -0.121 7.121 8 C -0.114 4.114 9 C -0.073 4.073 10 C -0.025 4.025 11 N -0.288 5.288 12 C -0.029 4.029 13 C 0.008 3.992 14 C -0.497 4.497 15 H 0.096 0.904 16 C -0.128 4.128 17 N -0.543 5.543 18 Si 0.708 3.292 19 H -0.208 1.208 20 H -0.224 1.224 21 H -0.186 1.186 22 C -0.221 4.221 23 C -0.242 4.242 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.118 0.882 27 H 0.153 0.847 28 H 0.152 0.848 29 H 0.163 0.837 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.156 0.844 33 H 0.087 0.913 34 H 0.021 0.979 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.076 4.314 12.189 19.113 hybrid contribution -0.256 -0.891 0.885 1.281 sum -14.332 3.423 13.074 19.699 Atomic orbital electron populations 1.23067 0.78466 1.04057 1.01222 1.86119 1.21231 1.26412 1.88561 1.18874 0.91759 0.84410 0.97336 1.20987 1.00114 0.91343 1.07720 1.20842 0.92678 0.98527 1.01828 1.17541 0.90779 0.80620 1.06943 1.91481 1.83365 1.42934 1.94354 1.20947 1.01127 0.89820 0.99463 1.19096 0.90229 0.95676 1.02334 1.20747 0.98378 0.91492 0.91896 1.60316 1.21390 1.28656 1.18426 1.21738 0.97189 0.87547 0.96424 1.19420 0.97254 0.89636 0.92895 1.20161 0.90918 1.17114 1.21526 0.90425 1.24938 0.97216 0.95779 0.94878 1.69898 1.06561 1.40355 1.37443 0.86880 0.78251 0.82013 0.82080 1.20794 1.22361 1.18588 1.22784 0.91175 1.07338 1.00754 1.22989 1.02441 0.96650 1.02080 0.92817 0.92467 0.88206 0.84723 0.84787 0.83691 0.90269 0.94580 0.84432 0.91347 0.97929 0.92888 0.91442 0.89643 0.89444 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.86 9.52 -19.57 -0.19 -4.05 16 3 C 0.12 1.61 6.57 -39.24 -0.26 1.35 16 4 C -0.18 -2.02 9.04 -39.44 -0.36 -2.37 16 5 C -0.12 -1.37 10.02 -39.53 -0.40 -1.77 16 6 C 0.06 0.82 7.30 -39.42 -0.29 0.53 16 7 F -0.14 -2.01 17.27 2.25 0.04 -1.97 16 8 C -0.09 -1.35 9.64 -39.53 -0.38 -1.73 16 9 C -0.07 -1.06 5.39 -104.48 -0.56 -1.63 16 10 C 0.10 1.67 5.46 -4.98 -0.03 1.64 16 11 N -0.66 -12.74 6.38 -115.06 -0.73 -13.47 16 12 C 0.10 2.09 5.13 -3.83 -0.02 2.07 16 13 C 0.01 0.21 1.00 -155.66 -0.15 0.06 16 14 C -0.46 -12.94 9.32 -34.44 -0.32 -13.27 16 15 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 16 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 17 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 18 Si 0.88 22.00 24.87 -169.99 -4.23 17.77 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 20 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 21 H -0.26 -6.15 5.75 56.52 0.33 -5.83 16 22 C -0.18 -3.76 9.96 -26.69 -0.27 -4.02 16 23 C -0.20 -4.39 7.63 -26.69 -0.20 -4.59 16 24 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 25 H 0.06 0.41 7.65 -51.93 -0.40 0.01 16 26 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 27 H 0.14 1.09 6.30 -52.48 -0.33 0.76 16 28 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.15 2.00 8.02 -52.49 -0.42 1.58 16 30 H 0.08 1.25 7.99 -51.93 -0.41 0.84 16 31 H 0.04 0.55 7.91 -51.93 -0.41 0.14 16 32 H 0.34 6.35 8.41 -39.29 -0.33 6.02 16 33 H 0.07 1.52 6.60 -51.93 -0.34 1.18 16 34 H 0.00 0.05 8.10 -51.92 -0.42 -0.37 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 38 H 0.09 1.98 7.29 -51.93 -0.38 1.61 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 326.63 15.07 4.92 4.92 Total: -1.00 -31.56 326.63 -7.35 -38.91 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -5.59 Total: 5.65 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -2.34 Total: -20.51 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.04 Total: -40.72 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: -0.19 Total: -4.05 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.23 Total: 17.77 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.56 -7.35 -38.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361137333.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.610 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds