Wall clock time and date at job start Tue Mar 31 2020 01:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35944 * 117.00244 * 2 1 4 4 C 1.38726 * 120.02650 * 359.72617 * 3 2 1 5 5 C 1.38136 * 119.96955 * 179.70178 * 4 3 2 6 6 C 1.38478 * 120.02570 * 0.56798 * 5 4 3 7 7 F 1.35095 * 119.96861 * 179.74667 * 6 5 4 8 8 C 1.38436 * 120.06214 * 359.72811 * 6 5 4 9 9 C 1.38173 * 120.02875 * 359.97394 * 8 6 5 10 10 C 1.50697 * 120.01279 * 179.97438 * 9 8 6 11 11 N 1.46896 * 109.47631 * 258.29834 * 10 9 8 12 12 C 1.46890 * 111.00324 * 183.16336 * 11 10 9 13 13 C 1.53002 * 109.47423 * 184.83533 * 12 11 10 14 14 C 1.50701 * 115.54863 * 64.78414 * 13 12 11 15 15 H 1.08002 * 119.99784 * 266.66193 * 14 13 12 16 16 C 1.37876 * 119.99919 * 86.65892 * 14 13 12 17 17 N 1.31520 * 119.99906 * 178.76446 * 16 14 13 18 18 Si 1.86799 * 120.00415 * 358.76292 * 16 14 13 19 19 H 1.48502 * 109.46939 * 90.40528 * 18 16 14 20 20 H 1.48497 * 109.47255 * 210.41036 * 18 16 14 21 21 H 1.48501 * 109.46906 * 330.41199 * 18 16 14 22 22 C 1.52997 * 117.49907 * 279.11697 * 13 12 11 23 23 C 1.52997 * 117.50075 * 210.45403 * 13 12 11 24 24 H 1.08998 * 109.47442 * 300.00028 * 1 2 3 25 25 H 1.08995 * 109.47347 * 60.00394 * 1 2 3 26 26 H 1.09008 * 109.47226 * 179.97438 * 1 2 3 27 27 H 1.08006 * 120.01794 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.98600 * 180.27469 * 5 4 3 29 29 H 1.07995 * 119.98403 * 179.97438 * 8 6 5 30 30 H 1.09003 * 109.47013 * 18.30205 * 10 9 8 31 31 H 1.09001 * 109.46891 * 138.30005 * 10 9 8 32 32 H 1.00900 * 110.99781 * 307.12383 * 11 10 9 33 33 H 1.09007 * 109.47371 * 304.83874 * 12 11 10 34 34 H 1.09009 * 109.47159 * 64.83696 * 12 11 10 35 35 H 0.96993 * 120.00425 * 179.97438 * 17 16 14 36 36 H 1.08998 * 117.49817 * 359.97438 * 22 13 12 37 37 H 1.08995 * 117.50325 * 145.01932 * 22 13 12 38 38 H 1.09003 * 117.50243 * 214.98254 * 23 13 12 39 39 H 1.09005 * 117.49930 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2912 2.3751 -0.0057 5 6 1.9195 3.6052 0.0005 6 6 3.3025 3.6769 0.0006 7 9 3.9158 4.8806 0.0015 8 6 4.0571 2.5163 0.0001 9 6 3.4310 1.2845 0.0001 10 6 4.2528 0.0214 -0.0010 11 7 4.2835 -0.5418 -1.3574 12 6 5.0142 -1.8158 -1.3821 13 6 5.1290 -2.3101 -2.8255 14 6 5.9480 -1.4427 -3.7463 15 1 5.4655 -0.6832 -4.3437 16 6 7.3131 -1.6186 -3.8261 17 7 8.0247 -0.8780 -4.6477 18 14 8.1522 -2.9087 -2.7673 19 1 8.2017 -4.1974 -3.5035 20 1 9.5338 -2.4664 -2.4499 21 1 7.3878 -3.0879 -1.5068 22 6 3.9191 -3.0303 -3.4239 23 6 5.1753 -3.8224 -3.0528 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 0.2126 2.3194 -0.0106 28 1 1.3320 4.5114 0.0005 29 1 5.1355 2.5737 -0.0002 30 1 5.2690 0.2487 0.3211 31 1 3.8082 -0.7019 0.6827 32 1 3.3500 -0.6532 -1.7238 33 1 6.0118 -1.6707 -0.9673 34 1 4.4771 -2.5544 -0.7868 35 1 8.9851 -1.0015 -4.7036 36 1 3.0414 -3.1524 -2.7892 37 1 3.7156 -2.8772 -4.4837 38 1 5.7978 -4.1900 -3.8686 39 1 5.1244 -4.4653 -2.1740 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361137333.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:30 Heat of formation + Delta-G solvation = -47.302373 kcal Electronic energy + Delta-G solvation = -21594.639074 eV Core-core repulsion = 18224.197764 eV Total energy + Delta-G solvation = -3370.441310 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.81691 -41.23731 -39.06530 -38.23353 -36.09707 -34.11915 -32.48392 -30.73131 -28.45611 -27.99837 -27.13150 -24.80800 -23.36418 -23.21263 -22.37980 -20.75033 -19.02593 -18.41848 -18.01045 -17.91478 -16.96599 -16.83456 -16.34609 -16.14179 -15.63303 -15.60187 -15.35430 -15.30130 -14.84174 -14.66984 -14.26879 -13.83778 -13.52064 -13.48293 -13.11978 -13.03395 -12.89577 -12.68080 -12.34524 -12.12525 -11.91865 -11.82262 -11.69299 -11.43372 -10.87438 -10.53732 -10.25680 -10.04922 -9.15726 -8.96789 -8.18478 -6.21379 0.13313 0.20873 1.38619 1.40852 1.53239 2.33418 2.44090 2.50436 3.13941 3.17112 3.30273 3.59855 3.72554 3.74681 4.11464 4.16204 4.21426 4.38857 4.40615 4.46379 4.46908 4.47623 4.59778 4.62553 4.77151 4.78174 4.86261 4.87905 4.88409 5.11111 5.12183 5.13888 5.35570 5.45346 5.56052 5.72261 5.80237 6.27411 6.40005 6.44585 6.67736 6.85236 7.44748 8.98396 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018069 B = 0.005041 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.277518 B = 5552.895537 C = 6564.090946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.122 3.878 4 C -0.175 4.175 5 C -0.109 4.109 6 C 0.040 3.960 7 F -0.151 7.151 8 C -0.110 4.110 9 C -0.097 4.097 10 C 0.110 3.890 11 N -0.677 5.677 12 C 0.109 3.891 13 C -0.020 4.020 14 C -0.455 4.455 15 H 0.025 0.975 16 C 0.012 3.988 17 N -0.958 5.958 18 Si 0.941 3.059 19 H -0.272 1.272 20 H -0.303 1.303 21 H -0.233 1.233 22 C -0.164 4.164 23 C -0.196 4.196 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.115 0.885 27 H 0.171 0.829 28 H 0.164 0.836 29 H 0.135 0.865 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.340 0.660 33 H 0.050 0.950 34 H 0.030 0.970 35 H 0.261 0.739 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.589 2.680 14.481 22.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.242 6.242 3 C 0.076 3.924 4 C -0.193 4.193 5 C -0.128 4.128 6 C 0.021 3.979 7 F -0.130 7.130 8 C -0.129 4.129 9 C -0.098 4.098 10 C -0.018 4.018 11 N -0.309 5.309 12 C -0.020 4.020 13 C -0.022 4.022 14 C -0.493 4.493 15 H 0.043 0.957 16 C -0.184 4.184 17 N -0.600 5.600 18 Si 0.767 3.233 19 H -0.197 1.197 20 H -0.230 1.230 21 H -0.156 1.156 22 C -0.201 4.201 23 C -0.234 4.234 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.133 0.867 27 H 0.188 0.812 28 H 0.181 0.819 29 H 0.153 0.847 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.158 0.842 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.121 0.879 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.779 2.917 14.238 22.198 hybrid contribution 0.419 -0.384 0.184 0.597 sum -16.361 2.533 14.422 21.956 Atomic orbital electron populations 1.23402 0.76134 1.05668 1.02621 1.86094 1.23671 1.26110 1.88311 1.18964 0.91316 0.85563 0.96573 1.21361 1.01762 0.90204 1.05986 1.21206 0.91771 1.00038 0.99758 1.17747 0.91850 0.80036 1.08312 1.91455 1.83710 1.43226 1.94568 1.20966 1.01013 0.90570 1.00384 1.19022 0.91289 0.94893 1.04573 1.20665 0.98500 0.92332 0.90309 1.60230 1.21555 1.28240 1.20829 1.21502 0.96975 0.88849 0.94663 1.19337 0.99004 0.90228 0.93580 1.20298 0.91420 1.16269 1.21310 0.95657 1.25804 0.98039 0.98198 0.96311 1.70068 1.06818 1.43036 1.40056 0.85867 0.76827 0.79226 0.81426 1.19735 1.23035 1.15586 1.22802 0.91666 1.04976 1.00641 1.23025 1.02351 0.95302 1.02733 0.90877 0.91489 0.86694 0.81158 0.81866 0.84664 0.91038 0.93471 0.84153 0.93118 0.95167 0.93045 0.87940 0.90810 0.91020 0.88080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.31 16 2 O -0.33 -7.29 9.52 -92.92 -0.88 -8.17 16 3 C 0.12 2.97 6.57 22.49 0.15 3.12 16 4 C -0.17 -3.31 9.04 22.36 0.20 -3.11 16 5 C -0.11 -2.23 10.02 22.30 0.22 -2.01 16 6 C 0.04 1.06 7.30 22.37 0.16 1.22 16 7 F -0.15 -4.27 17.27 44.97 0.78 -3.49 16 8 C -0.11 -3.23 9.64 22.30 0.22 -3.01 16 9 C -0.10 -2.81 5.39 -19.77 -0.11 -2.92 16 10 C 0.11 3.50 5.46 85.56 0.47 3.97 16 11 N -0.68 -25.90 6.38 -517.94 -3.31 -29.20 16 12 C 0.11 4.38 5.13 86.31 0.44 4.82 16 13 C -0.02 -0.92 1.00 -52.93 -0.05 -0.98 16 14 C -0.45 -26.39 9.32 25.60 0.24 -26.15 16 15 H 0.03 1.68 8.06 -2.91 -0.02 1.65 16 16 C 0.01 0.71 5.47 84.65 0.46 1.17 16 17 N -0.96 -62.00 13.96 21.45 0.30 -61.70 16 18 Si 0.94 45.52 24.87 68.60 1.71 47.22 16 19 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 21 H -0.23 -10.12 5.75 99.48 0.57 -9.54 16 22 C -0.16 -6.32 9.96 30.62 0.30 -6.01 16 23 C -0.20 -7.87 7.63 30.62 0.23 -7.64 16 24 H 0.07 0.62 7.67 -2.39 -0.02 0.60 16 25 H 0.07 0.70 7.65 -2.39 -0.02 0.68 16 26 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.17 1.95 6.30 -2.91 -0.02 1.93 16 28 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 29 H 0.14 4.03 8.02 -2.91 -0.02 4.00 16 30 H 0.07 2.31 7.99 -2.39 -0.02 2.29 16 31 H 0.05 1.38 7.91 -2.39 -0.02 1.36 16 32 H 0.34 12.45 8.41 -89.69 -0.75 11.70 16 33 H 0.05 2.19 6.60 -2.38 -0.02 2.17 16 34 H 0.03 1.05 8.10 -2.38 -0.02 1.03 16 35 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 36 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 37 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.07 3.10 7.29 -2.39 -0.02 3.09 16 39 H 0.10 3.44 8.14 -2.38 -0.02 3.42 16 Total: -1.00 -71.34 326.63 2.81 -68.53 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.17 Total: 23.03 kcal Atomic # 6 Polarization: -40.27 SS G_CDS: 4.06 Total: -36.22 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -3.01 Total: -90.91 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.88 Total: -8.17 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.78 Total: -3.49 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.71 Total: 47.22 kcal Total: -71.34 2.81 -68.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361137333.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.229 kcal (2) G-P(sol) polarization free energy of solvation -71.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds