Wall clock time and date at job start Tue Mar 31 2020 01:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39857 * 119.86376 * 2 1 4 4 C 1.29691 * 121.13473 * 199.41844 * 3 2 1 5 5 C 1.46743 * 119.54402 * 179.88373 * 4 3 2 6 6 O 1.21660 * 119.99706 * 184.90782 * 5 4 3 7 7 N 1.34771 * 119.99868 * 4.90013 * 5 4 3 8 8 C 1.46499 * 119.99846 * 185.00334 * 7 5 4 9 9 C 1.52994 * 109.47403 * 184.77859 * 8 7 5 10 10 C 1.50704 * 115.54757 * 294.82489 * 9 8 7 11 11 H 1.08000 * 119.99571 * 99.48878 * 10 9 8 12 12 C 1.37877 * 119.99893 * 279.20651 * 10 9 8 13 13 N 1.31512 * 120.00100 * 355.33195 * 12 10 9 14 14 Si 1.86802 * 119.99788 * 175.32943 * 12 10 9 15 15 H 1.48496 * 109.47249 * 90.00317 * 14 12 10 16 16 H 1.48500 * 109.47050 * 210.00413 * 14 12 10 17 17 H 1.48502 * 109.47299 * 330.00035 * 14 12 10 18 18 C 1.53002 * 117.52137 * 80.52531 * 9 8 7 19 19 C 1.52995 * 59.99907 * 107.48307 * 18 9 8 20 20 C 1.50545 * 120.90921 * 359.59785 * 4 3 2 21 21 C 1.53016 * 109.60188 * 326.08419 * 20 4 3 22 22 C 1.34753 * 119.79366 * 179.74923 * 2 1 3 23 23 O 1.21248 * 120.12492 * 359.73192 * 22 2 1 24 24 H 1.08993 * 109.47210 * 270.24569 * 1 2 3 25 25 H 1.08994 * 109.46636 * 30.25418 * 1 2 3 26 26 H 1.09001 * 109.46643 * 150.24901 * 1 2 3 27 27 H 0.96995 * 119.99985 * 5.01041 * 7 5 4 28 28 H 1.09000 * 109.47016 * 64.77802 * 8 7 5 29 29 H 1.08999 * 109.47577 * 304.78150 * 8 7 5 30 30 H 0.96998 * 119.99953 * 185.00360 * 13 12 10 31 31 H 1.08990 * 117.50014 * 214.97671 * 18 9 8 32 32 H 1.09002 * 117.49357 * 359.97438 * 18 9 8 33 33 H 1.09004 * 117.50297 * 252.51118 * 19 18 9 34 34 H 1.08998 * 117.51991 * 107.48597 * 19 18 9 35 35 H 1.08998 * 109.44352 * 86.12177 * 20 4 3 36 36 H 1.08993 * 109.45362 * 206.04484 * 20 4 3 37 37 H 1.09001 * 109.50968 * 167.36125 * 21 20 4 38 38 H 1.08997 * 109.51627 * 287.52170 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1614 1.2129 0.0000 4 6 3.4033 1.2731 -0.3691 5 6 4.0996 2.5647 -0.3580 6 8 5.2353 2.6471 -0.7863 7 7 3.4810 3.6596 0.1266 8 6 4.1326 4.9687 0.0377 9 6 3.2799 6.0130 0.7609 10 6 1.9287 6.2843 0.1509 11 1 1.0460 5.8209 0.5661 12 6 1.8190 7.1287 -0.9335 13 7 2.8782 7.7687 -1.3785 14 14 0.1657 7.3634 -1.7709 15 1 -0.5564 8.4933 -1.1328 16 1 0.3776 7.6610 -3.2102 17 1 -0.6385 6.1223 -1.6353 18 6 3.3948 6.0873 2.2848 19 6 4.0077 7.1881 1.4168 20 6 4.1421 0.0351 -0.8026 21 6 3.6423 -1.1683 -0.0004 22 6 2.1346 -1.1694 0.0051 23 8 1.5269 -2.2185 0.0146 24 1 -0.3633 0.0044 1.0276 25 1 -0.3632 0.8877 -0.5178 26 1 -0.3633 -0.8922 -0.5100 27 1 2.6044 3.5809 0.5342 28 1 4.2410 5.2502 -1.0097 29 1 5.1166 4.9172 0.5037 30 1 2.7878 8.4172 -2.0941 31 1 2.4932 6.3324 2.8461 32 1 4.0778 5.3918 2.7724 33 1 5.0941 7.2171 1.3334 34 1 3.5095 8.1576 1.4068 35 1 3.9673 -0.1386 -1.8644 36 1 5.2095 0.1696 -0.6281 37 1 4.0054 -2.0879 -0.4594 38 1 4.0102 -1.1016 1.0234 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366810577.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:53 Heat of formation + Delta-G solvation = -4.945876 kcal Electronic energy + Delta-G solvation = -21738.123050 eV Core-core repulsion = 18389.438417 eV Total energy + Delta-G solvation = -3348.684633 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.82799 -39.29533 -37.25032 -36.67899 -34.26148 -33.60029 -32.03246 -31.53147 -28.14306 -26.59402 -25.40042 -24.82698 -23.30538 -21.26117 -20.60562 -19.52544 -18.14823 -17.78233 -17.08865 -16.36170 -16.28810 -15.57073 -15.13343 -14.96976 -14.65562 -14.41094 -13.95974 -13.58312 -13.45221 -13.18099 -12.81048 -12.67545 -12.43290 -12.30498 -11.84570 -11.66644 -11.50480 -11.06234 -11.02940 -10.97422 -10.56730 -10.30712 -10.06239 -9.76886 -9.48460 -9.10132 -8.88054 -8.56580 -8.37626 -8.18325 -6.11825 -4.21031 0.90672 2.05330 2.28362 3.23273 3.31661 3.32079 3.33693 3.42832 3.87058 4.32152 4.33207 4.58638 4.76790 4.86786 5.14311 5.18944 5.28978 5.29642 5.34248 5.44008 5.56324 5.59147 5.91937 5.96205 6.02249 6.26597 6.40581 6.47465 6.65073 6.75758 7.05567 7.08214 7.31686 7.41901 7.45835 7.73829 7.78461 8.09788 8.28939 8.56281 8.80687 9.46441 10.95639 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018287 B = 0.004945 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.816001 B = 5661.102118 C = 6433.621199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.460 5.460 3 N -0.207 5.207 4 C 0.089 3.911 5 C 0.562 3.438 6 O -0.540 6.540 7 N -0.675 5.675 8 C 0.159 3.841 9 C 0.024 3.976 10 C -0.500 4.500 11 H 0.061 0.939 12 C 0.074 3.926 13 N -0.875 5.875 14 Si 0.889 3.111 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.272 1.272 18 C -0.209 4.209 19 C -0.145 4.145 20 C -0.107 4.107 21 C -0.142 4.142 22 C 0.495 3.505 23 O -0.524 6.524 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.411 0.589 28 H 0.075 0.925 29 H 0.047 0.953 30 H 0.262 0.738 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.095 -12.850 2.603 13.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.281 5.281 3 N -0.019 5.019 4 C -0.106 4.106 5 C 0.343 3.657 6 O -0.417 6.417 7 N -0.324 5.324 8 C 0.036 3.964 9 C 0.023 3.977 10 C -0.537 4.537 11 H 0.079 0.921 12 C -0.130 4.130 13 N -0.511 5.511 14 Si 0.717 3.283 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.247 4.247 19 C -0.183 4.183 20 C -0.147 4.147 21 C -0.182 4.182 22 C 0.283 3.717 23 O -0.398 6.398 24 H 0.085 0.915 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.247 0.753 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.118 0.882 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.188 -12.840 2.415 13.066 hybrid contribution -0.832 -0.213 -0.533 1.010 sum -1.019 -13.053 1.881 13.227 Atomic orbital electron populations 1.21722 0.74933 1.04045 1.03164 1.48945 1.07549 1.01411 1.70176 1.74790 1.08671 1.06943 1.11459 1.25071 0.91968 0.97363 0.96204 1.17238 0.85776 0.82492 0.80164 1.90823 1.17188 1.85060 1.48581 1.46007 1.22198 1.07236 1.56918 1.21149 0.93575 0.79700 1.01943 1.19033 0.96122 0.94307 0.88224 1.20362 0.90817 1.29262 1.13284 0.92075 1.24974 0.96284 0.95404 0.96322 1.69974 1.28419 1.24957 1.27720 0.86639 0.84182 0.78588 0.78923 1.20672 1.21195 1.19727 1.22990 1.02009 1.03769 0.95888 1.22498 0.96968 0.94767 1.04089 1.20900 1.03179 0.89327 1.01264 1.21860 0.90975 1.01240 1.04126 1.21311 0.91397 0.83392 0.75595 1.90718 1.70431 1.30397 1.48226 0.91463 0.89532 0.89635 0.75266 0.90635 0.93518 0.92824 0.90315 0.91605 0.91679 0.89637 0.88208 0.86543 0.86442 0.87456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.11 10.73 59.85 0.64 1.76 16 2 N -0.46 -6.04 3.86 -67.06 -0.26 -6.29 16 3 N -0.21 -2.94 10.57 34.90 0.37 -2.57 16 4 C 0.09 1.24 6.78 -80.14 -0.54 0.70 16 5 C 0.56 9.71 7.76 -12.83 -0.10 9.61 16 6 O -0.54 -10.56 16.27 5.22 0.08 -10.48 16 7 N -0.67 -12.53 5.45 -61.61 -0.34 -12.87 16 8 C 0.16 3.39 5.53 -4.05 -0.02 3.37 16 9 C 0.02 0.54 1.40 -155.66 -0.22 0.32 16 10 C -0.50 -12.43 8.57 -34.44 -0.30 -12.72 16 11 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 12 C 0.07 1.91 5.44 -17.82 -0.10 1.81 16 13 N -0.87 -23.49 12.85 55.43 0.71 -22.78 16 14 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 C -0.21 -4.19 9.96 -26.73 -0.27 -4.45 16 19 C -0.14 -3.18 9.39 -26.74 -0.25 -3.43 16 20 C -0.11 -1.14 5.82 -27.95 -0.16 -1.30 16 21 C -0.14 -1.36 6.20 -27.84 -0.17 -1.54 16 22 C 0.49 6.40 7.55 -10.96 -0.08 6.32 16 23 O -0.52 -8.05 16.67 5.59 0.09 -7.95 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.09 0.88 7.41 -51.93 -0.39 0.50 16 27 H 0.41 7.40 7.66 -40.82 -0.31 7.09 16 28 H 0.08 1.83 8.14 -51.93 -0.42 1.40 16 29 H 0.05 0.97 8.05 -51.93 -0.42 0.55 16 30 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 31 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.09 2.01 8.14 -51.93 -0.42 1.59 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.12 1.16 7.61 -51.93 -0.40 0.76 16 37 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 329.95 15.07 4.97 4.97 Total: -1.00 -29.46 329.95 -6.24 -35.69 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.28 Total: 6.75 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -1.57 Total: 0.45 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.49 Total: -44.51 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: 0.18 Total: -18.43 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.46 -6.24 -35.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366810577.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.749 kcal (2) G-P(sol) polarization free energy of solvation -29.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds