Wall clock time and date at job start Tue Mar 31 2020 01:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39857 * 119.86376 * 2 1 4 4 C 1.29691 * 121.13473 * 199.41844 * 3 2 1 5 5 C 1.46743 * 119.54402 * 179.88373 * 4 3 2 6 6 O 1.21660 * 119.99706 * 184.90782 * 5 4 3 7 7 N 1.34771 * 119.99868 * 4.90013 * 5 4 3 8 8 C 1.46499 * 119.99846 * 185.00334 * 7 5 4 9 9 C 1.52994 * 109.47403 * 184.77859 * 8 7 5 10 10 C 1.50704 * 115.54757 * 294.82489 * 9 8 7 11 11 H 1.08000 * 119.99571 * 99.48878 * 10 9 8 12 12 C 1.37877 * 119.99893 * 279.20651 * 10 9 8 13 13 N 1.31512 * 120.00100 * 355.33195 * 12 10 9 14 14 Si 1.86802 * 119.99788 * 175.32943 * 12 10 9 15 15 H 1.48496 * 109.47249 * 90.00317 * 14 12 10 16 16 H 1.48500 * 109.47050 * 210.00413 * 14 12 10 17 17 H 1.48502 * 109.47299 * 330.00035 * 14 12 10 18 18 C 1.53002 * 117.52137 * 80.52531 * 9 8 7 19 19 C 1.52995 * 59.99907 * 107.48307 * 18 9 8 20 20 C 1.50545 * 120.90921 * 359.59785 * 4 3 2 21 21 C 1.53016 * 109.60188 * 326.08419 * 20 4 3 22 22 C 1.34753 * 119.79366 * 179.74923 * 2 1 3 23 23 O 1.21248 * 120.12492 * 359.73192 * 22 2 1 24 24 H 1.08993 * 109.47210 * 270.24569 * 1 2 3 25 25 H 1.08994 * 109.46636 * 30.25418 * 1 2 3 26 26 H 1.09001 * 109.46643 * 150.24901 * 1 2 3 27 27 H 0.96995 * 119.99985 * 5.01041 * 7 5 4 28 28 H 1.09000 * 109.47016 * 64.77802 * 8 7 5 29 29 H 1.08999 * 109.47577 * 304.78150 * 8 7 5 30 30 H 0.96998 * 119.99953 * 185.00360 * 13 12 10 31 31 H 1.08990 * 117.50014 * 214.97671 * 18 9 8 32 32 H 1.09002 * 117.49357 * 359.97438 * 18 9 8 33 33 H 1.09004 * 117.50297 * 252.51118 * 19 18 9 34 34 H 1.08998 * 117.51991 * 107.48597 * 19 18 9 35 35 H 1.08998 * 109.44352 * 86.12177 * 20 4 3 36 36 H 1.08993 * 109.45362 * 206.04484 * 20 4 3 37 37 H 1.09001 * 109.50968 * 167.36125 * 21 20 4 38 38 H 1.08997 * 109.51627 * 287.52170 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1614 1.2129 0.0000 4 6 3.4033 1.2731 -0.3691 5 6 4.0996 2.5647 -0.3580 6 8 5.2353 2.6471 -0.7863 7 7 3.4810 3.6596 0.1266 8 6 4.1326 4.9687 0.0377 9 6 3.2799 6.0130 0.7609 10 6 1.9287 6.2843 0.1509 11 1 1.0460 5.8209 0.5661 12 6 1.8190 7.1287 -0.9335 13 7 2.8782 7.7687 -1.3785 14 14 0.1657 7.3634 -1.7709 15 1 -0.5564 8.4933 -1.1328 16 1 0.3776 7.6610 -3.2102 17 1 -0.6385 6.1223 -1.6353 18 6 3.3948 6.0873 2.2848 19 6 4.0077 7.1881 1.4168 20 6 4.1421 0.0351 -0.8026 21 6 3.6423 -1.1683 -0.0004 22 6 2.1346 -1.1694 0.0051 23 8 1.5269 -2.2185 0.0146 24 1 -0.3633 0.0044 1.0276 25 1 -0.3632 0.8877 -0.5178 26 1 -0.3633 -0.8922 -0.5100 27 1 2.6044 3.5809 0.5342 28 1 4.2410 5.2502 -1.0097 29 1 5.1166 4.9172 0.5037 30 1 2.7878 8.4172 -2.0941 31 1 2.4932 6.3324 2.8461 32 1 4.0778 5.3918 2.7724 33 1 5.0941 7.2171 1.3334 34 1 3.5095 8.1576 1.4068 35 1 3.9673 -0.1386 -1.8644 36 1 5.2095 0.1696 -0.6281 37 1 4.0054 -2.0879 -0.4594 38 1 4.0102 -1.1016 1.0234 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366810577.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:52 Heat of formation + Delta-G solvation = -24.355056 kcal Electronic energy + Delta-G solvation = -21738.964695 eV Core-core repulsion = 18389.438417 eV Total energy + Delta-G solvation = -3349.526278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.87388 -40.66739 -38.61374 -38.13766 -35.20237 -35.11428 -33.95936 -32.57054 -29.19761 -28.13863 -27.19461 -25.80484 -24.44725 -22.91989 -21.90824 -21.26017 -19.49990 -18.79994 -18.17190 -17.92350 -17.35970 -16.78928 -16.68397 -16.54456 -16.23215 -15.57189 -15.39507 -14.96949 -14.47202 -14.39333 -14.25335 -13.68441 -13.58478 -13.44727 -13.36989 -13.09439 -12.91887 -12.80344 -12.51918 -12.35925 -12.01821 -11.99810 -11.49668 -11.23131 -10.92777 -10.80489 -10.43243 -10.09754 -9.96469 -9.76369 -8.07623 -6.20364 -0.22983 1.04628 1.26846 1.42818 1.46683 1.53748 2.03531 2.13864 2.44291 2.85994 3.20911 3.45218 3.48870 3.65404 3.88674 4.04637 4.18645 4.26697 4.46812 4.48261 4.56944 4.68929 4.71067 4.74492 4.75191 4.76714 4.97506 5.02017 5.05405 5.10248 5.31739 5.50072 5.58521 5.70328 5.81450 6.38733 6.40092 6.58542 6.79548 6.86837 7.13680 7.49200 8.99460 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018287 B = 0.004945 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.816001 B = 5661.102118 C = 6433.621199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.463 5.463 3 N -0.215 5.215 4 C 0.088 3.912 5 C 0.566 3.434 6 O -0.563 6.563 7 N -0.678 5.678 8 C 0.175 3.825 9 C 0.001 3.999 10 C -0.502 4.502 11 H 0.060 0.940 12 C 0.029 3.971 13 N -0.905 5.905 14 Si 0.943 3.057 15 H -0.278 1.278 16 H -0.292 1.292 17 H -0.265 1.265 18 C -0.179 4.179 19 C -0.154 4.154 20 C -0.101 4.101 21 C -0.133 4.133 22 C 0.490 3.510 23 O -0.551 6.551 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.414 0.586 28 H 0.039 0.961 29 H 0.051 0.949 30 H 0.259 0.741 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.110 0.890 36 H 0.127 0.873 37 H 0.142 0.858 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.153 -14.434 3.249 14.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.284 5.284 3 N -0.027 5.027 4 C -0.106 4.106 5 C 0.349 3.651 6 O -0.440 6.440 7 N -0.327 5.327 8 C 0.051 3.949 9 C 0.000 4.000 10 C -0.540 4.540 11 H 0.079 0.921 12 C -0.172 4.172 13 N -0.543 5.543 14 Si 0.769 3.231 15 H -0.204 1.204 16 H -0.218 1.218 17 H -0.190 1.190 18 C -0.216 4.216 19 C -0.192 4.192 20 C -0.141 4.141 21 C -0.172 4.172 22 C 0.280 3.720 23 O -0.427 6.427 24 H 0.096 0.904 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.251 0.749 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.128 0.872 36 H 0.145 0.855 37 H 0.160 0.840 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.452 -14.436 3.075 14.767 hybrid contribution -0.783 0.272 -0.700 1.085 sum -1.236 -14.164 2.375 14.415 Atomic orbital electron populations 1.21886 0.74051 1.04477 1.04019 1.49124 1.08220 1.01166 1.69858 1.74711 1.08928 1.07866 1.11234 1.24816 0.92212 0.96806 0.96787 1.17584 0.85475 0.83143 0.78905 1.90809 1.18329 1.85685 1.49227 1.45902 1.22350 1.06748 1.57681 1.20726 0.93854 0.80794 0.99506 1.19085 0.95601 0.95150 0.90150 1.20641 0.91888 1.28450 1.13032 0.92149 1.25610 0.98864 0.95605 0.97103 1.70082 1.30006 1.25815 1.28354 0.85787 0.81076 0.78644 0.77557 1.20427 1.21778 1.18973 1.22978 1.02085 1.02342 0.94198 1.22425 0.97326 0.94027 1.05464 1.20970 1.03271 0.87933 1.01907 1.21928 0.88381 1.01703 1.05212 1.21903 0.92740 0.82749 0.74635 1.90709 1.71299 1.31130 1.49539 0.90448 0.89095 0.89196 0.74895 0.94275 0.93037 0.93190 0.89917 0.89186 0.90793 0.91845 0.87213 0.85509 0.83982 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.95 10.73 127.77 1.37 3.32 16 2 N -0.46 -11.29 3.86 -484.50 -1.87 -13.17 16 3 N -0.21 -5.74 10.57 -43.49 -0.46 -6.20 16 4 C 0.09 2.30 6.78 45.05 0.31 2.61 16 5 C 0.57 18.96 7.76 86.47 0.67 19.63 16 6 O -0.56 -21.55 16.27 -4.22 -0.07 -21.61 16 7 N -0.68 -24.70 5.45 -467.07 -2.55 -27.24 16 8 C 0.17 7.46 5.53 86.38 0.48 7.94 16 9 C 0.00 0.04 1.40 -52.93 -0.07 -0.04 16 10 C -0.50 -24.88 8.57 25.60 0.22 -24.66 16 11 H 0.06 2.93 7.82 -2.91 -0.02 2.91 16 12 C 0.03 1.50 5.44 84.66 0.46 1.96 16 13 N -0.91 -49.47 12.85 21.45 0.28 -49.19 16 14 Si 0.94 41.31 29.54 68.60 2.03 43.33 16 15 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 16 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 17 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 18 C -0.18 -6.84 9.96 30.59 0.30 -6.54 16 19 C -0.15 -6.71 9.39 30.59 0.29 -6.43 16 20 C -0.10 -1.88 5.82 29.80 0.17 -1.71 16 21 C -0.13 -2.14 6.20 29.88 0.19 -1.95 16 22 C 0.49 11.60 7.55 87.68 0.66 12.26 16 23 O -0.55 -15.94 16.67 -2.93 -0.05 -15.99 16 24 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.09 1.74 7.41 -2.39 -0.02 1.72 16 27 H 0.41 14.52 7.66 -92.71 -0.71 13.81 16 28 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.05 2.12 8.05 -2.39 -0.02 2.10 16 30 H 0.26 13.71 8.32 -92.71 -0.77 12.94 16 31 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 32 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.07 3.04 8.14 -2.38 -0.02 3.02 16 34 H 0.06 3.02 8.14 -2.39 -0.02 3.00 16 35 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.13 2.16 7.61 -2.39 -0.02 2.14 16 37 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -62.59 329.95 2.72 -59.87 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.37 Total: 23.80 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 5.04 Total: 6.40 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -4.60 Total: -95.79 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -0.12 Total: -37.61 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.33 kcal Total: -62.59 2.72 -59.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366810577.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.514 kcal (2) G-P(sol) polarization free energy of solvation -62.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds