Wall clock time and date at job start Tue Mar 31 2020 01:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35771 * 117.00636 * 2 1 4 4 C 1.35589 * 126.08871 * 176.96333 * 3 2 1 5 5 C 1.41053 * 107.79793 * 180.12119 * 4 3 2 6 6 C 1.47723 * 125.98325 * 179.86378 * 5 4 3 7 7 O 1.21581 * 119.99647 * 4.75969 * 6 5 4 8 8 N 1.34776 * 120.00306 * 185.03362 * 6 5 4 9 9 C 1.46499 * 120.00057 * 174.99180 * 8 6 5 10 10 C 1.53001 * 109.47124 * 185.41247 * 9 8 6 11 11 C 1.50697 * 115.54888 * 57.97185 * 10 9 8 12 12 H 1.07999 * 119.99797 * 264.62961 * 11 10 9 13 13 C 1.37878 * 120.00294 * 84.63767 * 11 10 9 14 14 N 1.31513 * 119.99542 * 1.95691 * 13 11 10 15 15 Si 1.86789 * 120.00178 * 181.95976 * 13 11 10 16 16 H 1.48509 * 109.47005 * 89.99671 * 15 13 11 17 17 H 1.48504 * 109.47283 * 209.99497 * 15 13 11 18 18 H 1.48496 * 109.47283 * 329.99942 * 15 13 11 19 19 C 1.52999 * 117.49404 * 272.30110 * 10 9 8 20 20 C 1.53000 * 117.49830 * 203.64268 * 10 9 8 21 21 N 1.31861 * 108.03753 * 359.60275 * 5 4 3 22 22 N 1.35839 * 126.07910 * 356.64303 * 3 2 1 23 23 C 1.46500 * 125.94922 * 0.05859 * 22 3 2 24 24 H 1.08994 * 109.47323 * 173.20058 * 1 2 3 25 25 H 1.09004 * 109.46941 * 293.19931 * 1 2 3 26 26 H 1.09003 * 109.46339 * 53.19760 * 1 2 3 27 27 H 1.08006 * 126.09910 * 359.96807 * 4 3 2 28 28 H 0.96994 * 119.99824 * 354.99722 * 8 6 5 29 29 H 1.09002 * 109.46909 * 305.41246 * 9 8 6 30 30 H 1.08997 * 109.47282 * 65.40887 * 9 8 6 31 31 H 0.97001 * 120.00123 * 185.02685 * 14 13 11 32 32 H 1.09003 * 117.50287 * 359.97438 * 19 10 9 33 33 H 1.09004 * 117.49457 * 145.02181 * 19 10 9 34 34 H 1.08990 * 117.50126 * 214.97878 * 20 10 9 35 35 H 1.09006 * 117.49342 * 359.97397 * 20 10 9 36 36 H 1.09003 * 109.47137 * 277.08468 * 23 22 3 37 37 H 1.08995 * 109.47544 * 37.08769 * 23 22 3 38 38 H 1.08998 * 109.47212 * 157.09374 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 6 3.3830 1.4244 0.0580 5 6 3.5972 2.8184 0.0374 6 6 4.9090 3.4958 0.0869 7 8 5.9328 2.8404 0.0645 8 7 4.9709 4.8401 0.1625 9 6 6.2661 5.5059 0.3221 10 6 6.0470 7.0077 0.5156 11 6 5.1809 7.3926 1.6871 12 1 4.1264 7.5752 1.5420 13 6 5.7346 7.5118 2.9442 14 7 7.0256 7.3273 3.1142 15 14 4.6512 7.9352 4.4057 16 1 4.1392 6.6844 5.0212 17 1 5.4448 8.6912 5.4077 18 1 3.5081 8.7666 3.9502 19 6 5.9633 7.8769 -0.7408 20 6 7.2032 7.9425 0.1545 21 7 2.4218 3.4110 -0.0395 22 7 1.4323 2.4201 -0.0643 23 6 -0.0124 2.6491 -0.1447 24 1 -0.3633 -1.0204 -0.1217 25 1 -0.3633 0.4048 0.9446 26 1 -0.3632 0.6157 -0.8229 27 1 4.1479 0.6638 0.1130 28 1 4.1580 5.3666 0.1112 29 1 6.7792 5.0983 1.1932 30 1 6.8727 5.3388 -0.5679 31 1 7.4037 7.3389 4.0074 32 1 6.0646 7.3789 -1.7051 33 1 5.2819 8.7274 -0.7197 34 1 7.3371 8.8361 0.7640 35 1 8.1200 7.4874 -0.2205 36 1 -0.3385 2.5531 -1.1804 37 1 -0.5317 1.9133 0.4693 38 1 -0.2421 3.6513 0.2170 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404117845.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:48 Heat of formation + Delta-G solvation = 24.885637 kcal Electronic energy + Delta-G solvation = -21524.805943 eV Core-core repulsion = 18177.414902 eV Total energy + Delta-G solvation = -3347.391041 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.69431 -40.55261 -39.19899 -38.40283 -35.06110 -34.43063 -33.94896 -31.23947 -29.15578 -28.27847 -27.43393 -26.70511 -23.95007 -22.88343 -22.48620 -21.34885 -20.76216 -19.24456 -18.12658 -17.70720 -17.42168 -16.88567 -16.59961 -16.26833 -16.24890 -16.10341 -15.55280 -15.30080 -14.82708 -14.64333 -14.37611 -14.06272 -13.89146 -13.67444 -13.45490 -12.90629 -12.83154 -12.39781 -12.34825 -12.27804 -12.00192 -11.78807 -11.51037 -11.21819 -10.94523 -10.41030 -10.27643 -10.06826 -9.81132 -9.53036 -8.08995 -6.21595 0.23847 1.06993 1.11795 1.41437 1.43362 1.51577 1.83598 2.29588 2.40991 2.45384 3.13633 3.20405 3.53456 3.86790 4.02917 4.18106 4.26755 4.28199 4.32507 4.39223 4.54473 4.54910 4.67277 4.69265 4.71863 4.73554 4.99560 5.02440 5.04816 5.24243 5.30655 5.49799 5.59629 5.70496 5.78547 6.16564 6.30887 6.38195 6.69776 6.85409 7.18919 7.47728 8.98948 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019244 B = 0.004523 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.682220 B = 6188.875095 C = 6821.299946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.297 6.297 3 C 0.283 3.717 4 C -0.263 4.263 5 C 0.045 3.955 6 C 0.587 3.413 7 O -0.574 6.574 8 N -0.679 5.679 9 C 0.176 3.824 10 C -0.001 4.001 11 C -0.501 4.501 12 H 0.060 0.940 13 C 0.026 3.974 14 N -0.906 5.906 15 Si 0.946 3.054 16 H -0.284 1.284 17 H -0.287 1.287 18 H -0.263 1.263 19 C -0.180 4.180 20 C -0.150 4.150 21 N -0.260 5.260 22 N -0.383 5.383 23 C 0.061 3.939 24 H 0.134 0.866 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.160 0.840 28 H 0.412 0.588 29 H 0.036 0.964 30 H 0.048 0.952 31 H 0.259 0.741 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.126 0.874 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.962 -11.476 -7.195 22.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 O -0.204 6.204 3 C 0.114 3.886 4 C -0.294 4.294 5 C -0.121 4.121 6 C 0.371 3.629 7 O -0.453 6.453 8 N -0.328 5.328 9 C 0.052 3.948 10 C -0.001 4.001 11 C -0.539 4.539 12 H 0.078 0.922 13 C -0.174 4.174 14 N -0.543 5.543 15 Si 0.772 3.228 16 H -0.210 1.210 17 H -0.213 1.213 18 H -0.188 1.188 19 C -0.217 4.217 20 C -0.188 4.188 21 N -0.093 5.093 22 N -0.181 5.181 23 C -0.077 4.077 24 H 0.152 0.848 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.178 0.822 28 H 0.248 0.752 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.144 0.856 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.746 -11.034 -7.129 22.079 hybrid contribution -0.146 -0.166 1.140 1.161 sum -17.892 -11.200 -5.989 21.942 Atomic orbital electron populations 1.24115 0.75235 1.07572 1.03096 1.86331 1.24485 1.20001 1.89538 1.19361 0.90527 0.79978 0.98690 1.20396 0.93522 0.95015 1.20438 1.21632 0.92375 0.93670 1.04473 1.17270 0.86463 0.82309 0.76836 1.90728 1.35590 1.66043 1.52918 1.45726 1.11642 1.05233 1.70170 1.20725 0.83072 0.92931 0.98072 1.19066 0.99533 0.87543 0.93984 1.20626 0.94355 1.46878 0.92036 0.92222 1.25650 0.95730 0.94820 1.01217 1.70102 1.11877 1.50020 1.22331 0.85745 0.79258 0.78048 0.79752 1.20991 1.21271 1.18759 1.23047 1.01135 1.03206 0.94282 1.22394 0.91886 1.02092 1.02434 1.77704 0.95344 1.11939 1.24279 1.49438 1.08313 1.02140 1.58258 1.23078 0.71789 1.07097 1.05769 0.84839 0.90420 0.89872 0.82232 0.75153 0.94588 0.93372 0.93233 0.89162 0.89731 0.91658 0.90830 0.87808 0.85575 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.05 9.40 113.37 1.07 1.01 16 2 O -0.30 -5.81 10.57 -90.98 -0.96 -6.77 16 3 C 0.28 7.31 7.78 83.46 0.65 7.96 16 4 C -0.26 -8.66 10.60 22.35 0.24 -8.42 16 5 C 0.04 1.65 7.09 42.34 0.30 1.95 16 6 C 0.59 25.46 7.82 86.75 0.68 26.13 16 7 O -0.57 -28.05 16.91 -3.97 -0.07 -28.12 16 8 N -0.68 -29.39 5.37 -466.08 -2.50 -31.89 16 9 C 0.18 8.35 5.54 86.38 0.48 8.83 16 10 C 0.00 -0.03 1.50 -52.93 -0.08 -0.11 16 11 C -0.50 -26.36 8.39 25.60 0.21 -26.15 16 12 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 13 C 0.03 1.44 5.42 84.66 0.46 1.90 16 14 N -0.91 -51.96 12.73 21.45 0.27 -51.68 16 15 Si 0.95 43.34 29.54 68.60 2.03 45.37 16 16 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 17 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 18 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 19 C -0.18 -7.36 9.94 30.62 0.30 -7.05 16 20 C -0.15 -6.93 9.26 30.62 0.28 -6.65 16 21 N -0.26 -8.55 12.27 -48.43 -0.59 -9.14 16 22 N -0.38 -9.20 4.03 -480.58 -1.94 -11.14 16 23 C 0.06 0.68 9.59 127.77 1.23 1.91 16 24 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 25 H 0.08 0.38 6.58 -2.39 -0.02 0.36 16 26 H 0.08 0.34 5.84 -2.39 -0.01 0.33 16 27 H 0.16 5.16 8.06 -2.91 -0.02 5.14 16 28 H 0.41 16.91 7.96 -92.71 -0.74 16.17 16 29 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.05 2.18 8.11 -2.39 -0.02 2.16 16 31 H 0.26 14.33 8.32 -92.71 -0.77 13.56 16 32 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 34 H 0.06 3.27 8.14 -2.39 -0.02 3.25 16 35 H 0.07 3.22 8.14 -2.38 -0.02 3.20 16 36 H 0.10 0.68 7.64 -2.39 -0.02 0.66 16 37 H 0.13 0.61 4.63 -2.39 -0.01 0.60 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -71.49 327.01 2.40 -69.08 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.35 Total: 23.00 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 5.82 Total: 1.30 kcal Atomic # 7 Polarization: -99.10 SS G_CDS: -4.76 Total: -103.86 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -1.03 Total: -34.89 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -71.49 2.40 -69.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404117845.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.968 kcal (2) G-P(sol) polarization free energy of solvation -71.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds