Wall clock time and date at job start Tue Mar 31 2020 00:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35676 * 117.00176 * 180.02562 * 3 2 1 5 5 N 1.32276 * 119.68324 * 359.97438 * 4 3 2 6 6 C 1.31936 * 121.64885 * 179.97438 * 5 4 3 7 7 C 1.38091 * 120.83342 * 0.02562 * 6 5 4 8 8 C 1.38788 * 119.28648 * 359.97438 * 7 6 5 9 9 C 1.38424 * 118.48619 * 359.75515 * 8 7 6 10 10 C 1.50693 * 120.44682 * 180.24359 * 9 8 7 11 11 N 1.46496 * 109.47182 * 260.25154 * 10 9 8 12 12 C 1.34783 * 120.00146 * 179.97438 * 11 10 9 13 13 O 1.21584 * 120.00018 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00159 * 180.02562 * 12 11 10 15 15 C 1.46493 * 120.00268 * 180.02562 * 14 12 11 16 16 C 1.50694 * 109.47272 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99912 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99919 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00238 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99942 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46837 * 90.00184 * 20 18 16 22 22 H 1.48503 * 109.47246 * 210.00108 * 20 18 16 23 23 H 1.48499 * 109.47121 * 330.00313 * 20 18 16 24 24 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 29 29 H 1.08003 * 119.58431 * 179.97438 * 6 5 4 30 30 H 1.08000 * 120.35648 * 180.02562 * 7 6 5 31 31 H 1.07997 * 120.75822 * 180.02562 * 8 7 6 32 32 H 1.09004 * 109.47059 * 20.24793 * 10 9 8 33 33 H 1.09001 * 109.47661 * 140.24511 * 10 9 8 34 34 H 0.97002 * 119.99999 * 0.02562 * 11 10 9 35 35 H 0.96999 * 119.99423 * 359.97438 * 14 12 11 36 36 H 1.09004 * 109.46947 * 299.99732 * 15 14 12 37 37 H 1.08996 * 109.46941 * 59.99431 * 15 14 12 38 38 H 0.96995 * 119.99805 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3514 1.5250 -0.0005 5 7 4.1514 0.4716 -0.0005 6 6 5.4645 0.5995 -0.0015 7 6 6.0540 1.8482 -0.0021 8 6 5.2492 2.9789 -0.0022 9 6 3.8752 2.8113 -0.0069 10 6 2.9598 4.0083 -0.0126 11 7 2.4725 4.2570 1.3463 12 6 1.6340 5.2851 1.5840 13 8 1.2824 6.0065 0.6706 14 7 1.1860 5.5142 2.8344 15 6 0.2742 6.6313 3.0926 16 6 -0.0736 6.6673 4.5584 17 1 0.3425 5.9313 5.2304 18 6 -0.9232 7.6398 5.0417 19 7 -1.4296 8.5363 4.2235 20 14 -1.3550 7.6840 6.8586 21 1 -0.3737 8.5336 7.5800 22 1 -2.7181 8.2477 7.0299 23 1 -1.3163 6.3058 7.4102 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 6.0863 -0.2837 -0.0011 30 1 7.1298 1.9440 -0.0034 31 1 5.6850 3.9670 -0.0031 32 1 3.5064 4.8819 -0.3681 33 1 2.1139 3.8158 -0.6725 34 1 2.7538 3.6821 2.0752 35 1 1.4668 4.9389 3.5631 36 1 0.7569 7.5670 2.8103 37 1 -0.6356 6.5006 2.5067 38 1 -2.0275 9.2202 4.5635 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426429958.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:48 Heat of formation + Delta-G solvation = -39.581520 kcal Electronic energy + Delta-G solvation = -21041.868477 eV Core-core repulsion = 17691.681930 eV Total energy + Delta-G solvation = -3350.186547 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.96449 -39.01119 -38.18200 -35.13506 -33.96860 -32.56078 -32.28308 -31.94301 -30.25856 -27.43989 -25.84786 -24.38048 -22.78820 -22.39384 -21.83249 -20.09507 -18.67041 -18.08307 -17.14706 -16.49609 -16.27395 -15.68185 -15.47439 -14.80000 -14.62079 -14.36692 -14.10838 -14.07482 -13.52393 -13.18054 -13.01263 -12.79756 -12.70131 -12.52235 -11.99273 -11.88319 -11.70303 -11.50584 -10.93510 -10.92114 -10.84658 -10.26213 -10.14690 -9.86153 -9.36766 -9.32151 -8.71826 -8.66139 -8.58590 -7.68011 -6.11185 -4.17366 0.80467 1.04282 2.84972 3.27426 3.31272 3.34340 3.37640 3.75072 4.02202 4.05175 4.37079 4.58541 4.64511 4.72670 4.85662 4.88064 5.00576 5.19042 5.20769 5.24788 5.29316 5.50030 5.55277 5.69649 5.82307 5.90236 5.95756 6.07736 6.21434 6.91857 7.08237 7.19283 7.57994 7.58766 7.62430 7.63485 7.97182 8.10531 8.82119 9.01762 9.40003 9.54583 10.99135 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.020847 B = 0.003482 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.777245 B = 8039.317559 C = 8546.719777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.068 3.932 3 O -0.295 6.295 4 C 0.339 3.661 5 N -0.544 5.544 6 C 0.141 3.859 7 C -0.215 4.215 8 C -0.023 4.023 9 C -0.173 4.173 10 C 0.197 3.803 11 N -0.750 5.750 12 C 0.695 3.305 13 O -0.602 6.602 14 N -0.730 5.730 15 C 0.267 3.733 16 C -0.541 4.541 17 H 0.062 0.938 18 C 0.063 3.937 19 N -0.886 5.886 20 Si 0.904 3.096 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.159 0.841 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.390 0.610 35 H 0.385 0.615 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.547 -18.387 -8.192 24.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.008 4.008 3 O -0.201 6.201 4 C 0.159 3.841 5 N -0.268 5.268 6 C -0.015 4.015 7 C -0.236 4.236 8 C -0.049 4.049 9 C -0.177 4.177 10 C 0.072 3.928 11 N -0.408 5.408 12 C 0.395 3.605 13 O -0.481 6.481 14 N -0.382 5.382 15 C 0.146 3.854 16 C -0.579 4.579 17 H 0.080 0.920 18 C -0.140 4.140 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.176 0.824 30 H 0.156 0.844 31 H 0.162 0.838 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.222 0.778 35 H 0.217 0.783 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.411 -18.144 -9.045 23.770 hybrid contribution 0.502 0.058 1.646 1.721 sum 12.912 -18.086 -7.399 23.422 Atomic orbital electron populations 1.21828 0.92808 1.02754 1.03868 1.22616 0.95012 0.80937 1.02192 1.86363 1.16310 1.30541 1.86892 1.19702 0.84330 0.89290 0.90728 1.67399 1.06641 1.32967 1.19778 1.22440 0.89210 0.97432 0.92393 1.21984 1.01476 0.93197 1.06920 1.21465 0.91547 0.99964 0.91958 1.20049 0.94901 0.93284 1.09438 1.19629 0.95692 0.92841 0.84640 1.45120 1.52449 1.33628 1.09554 1.16115 0.79223 0.80853 0.84355 1.90866 1.63136 1.50200 1.43899 1.45697 1.51084 1.35130 1.06277 1.18965 0.87563 0.83070 0.95799 1.21237 1.29325 1.14410 0.92943 0.91998 1.24943 0.95569 0.95151 0.98374 1.69981 1.31445 1.16011 1.34895 0.86421 0.77789 0.78294 0.84414 1.20511 1.21031 1.19802 0.90393 0.91277 0.91525 0.91805 0.91688 0.82428 0.84420 0.83810 0.91024 0.90639 0.77764 0.78257 0.95764 0.95761 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 10.28 37.16 0.38 -1.05 16 2 C 0.07 0.71 6.03 37.16 0.22 0.93 16 3 O -0.29 -3.89 9.37 -18.73 -0.18 -4.06 16 4 C 0.34 4.23 7.47 -17.12 -0.13 4.10 16 5 N -0.54 -6.14 9.22 -13.33 -0.12 -6.26 16 6 C 0.14 1.20 11.18 -17.56 -0.20 1.01 16 7 C -0.22 -1.66 10.11 -39.43 -0.40 -2.06 16 8 C -0.02 -0.22 9.81 -39.31 -0.39 -0.60 16 9 C -0.17 -2.04 5.28 -104.32 -0.55 -2.59 16 10 C 0.20 2.82 5.48 -5.20 -0.03 2.79 16 11 N -0.75 -12.14 5.55 -66.42 -0.37 -12.51 16 12 C 0.69 15.00 8.57 -86.91 -0.74 14.25 16 13 O -0.60 -15.55 16.34 5.29 0.09 -15.46 16 14 N -0.73 -16.25 5.55 -66.42 -0.37 -16.62 16 15 C 0.27 7.34 5.43 -5.20 -0.03 7.31 16 16 C -0.54 -15.01 9.28 -34.44 -0.32 -15.33 16 17 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 18 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 20 Si 0.90 21.15 29.54 -169.99 -5.02 16.12 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 28 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 29 H 0.16 0.85 8.06 -52.48 -0.42 0.43 16 30 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 31 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.07 1.00 8.03 -51.93 -0.42 0.59 16 33 H 0.08 1.20 7.87 -51.93 -0.41 0.79 16 34 H 0.39 5.44 8.48 -40.82 -0.35 5.10 16 35 H 0.39 7.42 8.34 -40.82 -0.34 7.08 16 36 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 334.26 15.07 5.04 5.04 Total: -1.00 -34.56 334.26 -7.74 -42.30 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -5.27 Total: 6.80 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: -2.27 Total: 10.45 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: -0.12 Total: -61.18 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.09 Total: -19.53 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.56 -7.74 -42.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426429958.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.715 kcal (2) G-P(sol) polarization free energy of solvation -34.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds