Wall clock time and date at job start Tue Mar 31 2020 00:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35676 * 117.00176 * 180.02562 * 3 2 1 5 5 N 1.32276 * 119.68324 * 359.97438 * 4 3 2 6 6 C 1.31936 * 121.64885 * 179.97438 * 5 4 3 7 7 C 1.38091 * 120.83342 * 0.02562 * 6 5 4 8 8 C 1.38788 * 119.28648 * 359.97438 * 7 6 5 9 9 C 1.38424 * 118.48619 * 359.75515 * 8 7 6 10 10 C 1.50693 * 120.44682 * 180.24359 * 9 8 7 11 11 N 1.46496 * 109.47182 * 260.25154 * 10 9 8 12 12 C 1.34783 * 120.00146 * 179.97438 * 11 10 9 13 13 O 1.21584 * 120.00018 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00159 * 180.02562 * 12 11 10 15 15 C 1.46493 * 120.00268 * 180.02562 * 14 12 11 16 16 C 1.50694 * 109.47272 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99912 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99919 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00238 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99942 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46837 * 90.00184 * 20 18 16 22 22 H 1.48503 * 109.47246 * 210.00108 * 20 18 16 23 23 H 1.48499 * 109.47121 * 330.00313 * 20 18 16 24 24 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 29 29 H 1.08003 * 119.58431 * 179.97438 * 6 5 4 30 30 H 1.08000 * 120.35648 * 180.02562 * 7 6 5 31 31 H 1.07997 * 120.75822 * 180.02562 * 8 7 6 32 32 H 1.09004 * 109.47059 * 20.24793 * 10 9 8 33 33 H 1.09001 * 109.47661 * 140.24511 * 10 9 8 34 34 H 0.97002 * 119.99999 * 0.02562 * 11 10 9 35 35 H 0.96999 * 119.99423 * 359.97438 * 14 12 11 36 36 H 1.09004 * 109.46947 * 299.99732 * 15 14 12 37 37 H 1.08996 * 109.46941 * 59.99431 * 15 14 12 38 38 H 0.96995 * 119.99805 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3514 1.5250 -0.0005 5 7 4.1514 0.4716 -0.0005 6 6 5.4645 0.5995 -0.0015 7 6 6.0540 1.8482 -0.0021 8 6 5.2492 2.9789 -0.0022 9 6 3.8752 2.8113 -0.0069 10 6 2.9598 4.0083 -0.0126 11 7 2.4725 4.2570 1.3463 12 6 1.6340 5.2851 1.5840 13 8 1.2824 6.0065 0.6706 14 7 1.1860 5.5142 2.8344 15 6 0.2742 6.6313 3.0926 16 6 -0.0736 6.6673 4.5584 17 1 0.3425 5.9313 5.2304 18 6 -0.9232 7.6398 5.0417 19 7 -1.4296 8.5363 4.2235 20 14 -1.3550 7.6840 6.8586 21 1 -0.3737 8.5336 7.5800 22 1 -2.7181 8.2477 7.0299 23 1 -1.3163 6.3058 7.4102 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 6.0863 -0.2837 -0.0011 30 1 7.1298 1.9440 -0.0034 31 1 5.6850 3.9670 -0.0031 32 1 3.5064 4.8819 -0.3681 33 1 2.1139 3.8158 -0.6725 34 1 2.7538 3.6821 2.0752 35 1 1.4668 4.9389 3.5631 36 1 0.7569 7.5670 2.8103 37 1 -0.6356 6.5006 2.5067 38 1 -2.0275 9.2202 4.5635 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426429958.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:47 Heat of formation + Delta-G solvation = -67.060552 kcal Electronic energy + Delta-G solvation = -21043.060057 eV Core-core repulsion = 17691.681930 eV Total energy + Delta-G solvation = -3351.378127 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.80671 -40.73279 -39.01190 -36.56968 -35.89693 -34.38738 -33.32866 -32.97571 -31.15894 -29.31197 -27.16064 -25.18745 -24.58315 -23.32696 -22.84269 -21.87405 -19.88269 -19.45811 -18.17124 -17.91839 -17.52953 -17.19270 -16.54035 -16.42829 -16.28536 -15.54587 -15.14712 -15.01221 -14.78815 -14.67679 -14.39035 -14.03438 -13.92017 -13.56807 -13.41659 -13.32189 -12.90009 -12.76241 -12.69101 -12.40101 -12.21539 -11.73252 -11.46641 -11.36608 -10.83052 -10.79370 -10.63325 -10.26807 -9.58304 -9.45951 -8.27183 -6.43676 0.02521 0.30867 1.43899 1.46945 1.57953 1.95373 2.06045 2.26095 2.40686 2.80475 3.07581 3.27086 3.59825 3.74122 3.82193 4.06123 4.07487 4.13590 4.25007 4.41934 4.54150 4.62133 4.77019 4.83884 4.90871 5.07293 5.09796 5.19571 5.25237 5.28813 5.47948 5.50228 5.53972 5.68405 5.86323 6.23251 6.28782 6.67860 6.83861 7.25098 7.30328 7.72481 8.85290 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.020847 B = 0.003482 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.777245 B = 8039.317559 C = 8546.719777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.067 3.933 3 O -0.321 6.321 4 C 0.320 3.680 5 N -0.559 5.559 6 C 0.140 3.860 7 C -0.201 4.201 8 C -0.021 4.021 9 C -0.190 4.190 10 C 0.201 3.799 11 N -0.725 5.725 12 C 0.694 3.306 13 O -0.648 6.648 14 N -0.723 5.723 15 C 0.286 3.714 16 C -0.555 4.555 17 H 0.082 0.918 18 C 0.004 3.996 19 N -0.931 5.931 20 Si 0.987 3.013 21 H -0.270 1.270 22 H -0.283 1.283 23 H -0.257 1.257 24 H 0.103 0.897 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.193 0.807 30 H 0.175 0.825 31 H 0.162 0.838 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.404 0.596 35 H 0.403 0.597 36 H -0.013 1.013 37 H -0.015 1.015 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.756 -20.342 -6.680 26.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.008 4.008 3 O -0.228 6.228 4 C 0.142 3.858 5 N -0.283 5.283 6 C -0.016 4.016 7 C -0.221 4.221 8 C -0.047 4.047 9 C -0.193 4.193 10 C 0.076 3.924 11 N -0.382 5.382 12 C 0.393 3.607 13 O -0.531 6.531 14 N -0.377 5.377 15 C 0.162 3.838 16 C -0.593 4.593 17 H 0.100 0.900 18 C -0.196 4.196 19 N -0.569 5.569 20 Si 0.810 3.190 21 H -0.195 1.195 22 H -0.209 1.209 23 H -0.180 1.180 24 H 0.122 0.878 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.209 0.791 30 H 0.192 0.808 31 H 0.180 0.820 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.240 0.760 35 H 0.238 0.762 36 H 0.005 0.995 37 H 0.003 0.997 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.679 -20.177 -7.527 26.062 hybrid contribution -0.059 0.583 1.070 1.220 sum 14.619 -19.594 -6.457 25.285 Atomic orbital electron populations 1.21845 0.92230 1.04092 1.02722 1.22718 0.95446 0.80157 1.02458 1.86331 1.17281 1.31930 1.87274 1.19843 0.84263 0.89880 0.91859 1.67449 1.07909 1.32574 1.20353 1.23146 0.88526 0.99282 0.90636 1.22372 1.03098 0.92047 1.04595 1.21759 0.90448 1.01661 0.90821 1.19844 0.95556 0.91781 1.12135 1.19625 0.95543 0.94441 0.82762 1.44926 1.50417 1.31717 1.11122 1.16264 0.79523 0.81474 0.83399 1.90832 1.64867 1.52198 1.45177 1.45300 1.50627 1.34382 1.07380 1.18414 0.86433 0.83157 0.95757 1.21594 1.29656 1.15126 0.92933 0.89958 1.26068 0.95097 0.94376 1.04014 1.70145 1.32172 1.16901 1.37697 0.85132 0.77409 0.79120 0.77373 1.19499 1.20882 1.18047 0.87821 0.92699 0.92283 0.91321 0.91482 0.79058 0.80802 0.82003 0.90721 0.92855 0.76050 0.76205 0.99481 0.99748 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 10.28 71.98 0.74 -2.07 16 2 C 0.07 1.39 6.03 71.98 0.43 1.83 16 3 O -0.32 -8.62 9.37 -89.93 -0.84 -9.46 16 4 C 0.32 7.80 7.47 84.78 0.63 8.43 16 5 N -0.56 -11.62 9.22 -308.93 -2.85 -14.46 16 6 C 0.14 1.91 11.18 84.64 0.95 2.85 16 7 C -0.20 -2.30 10.11 22.37 0.23 -2.08 16 8 C -0.02 -0.33 9.81 22.45 0.22 -0.11 16 9 C -0.19 -4.30 5.28 -19.67 -0.10 -4.41 16 10 C 0.20 5.83 5.48 85.63 0.47 6.30 16 11 N -0.73 -23.62 5.55 -482.30 -2.68 -26.30 16 12 C 0.69 30.82 8.57 179.05 1.53 32.35 16 13 O -0.65 -35.07 16.34 -3.98 -0.07 -35.14 16 14 N -0.72 -32.92 5.55 -482.32 -2.68 -35.59 16 15 C 0.29 16.37 5.43 85.63 0.46 16.83 16 16 C -0.56 -31.02 9.28 25.60 0.24 -30.78 16 17 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 18 C 0.00 0.23 5.46 84.66 0.46 0.69 16 19 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 20 Si 0.99 42.93 29.54 68.60 2.03 44.96 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 24 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.32 8.10 -2.39 -0.02 1.30 16 28 H 0.07 1.33 8.10 -2.39 -0.02 1.31 16 29 H 0.19 1.21 8.06 -2.91 -0.02 1.18 16 30 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 31 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.07 2.12 8.03 -2.38 -0.02 2.10 16 33 H 0.05 1.79 7.87 -2.39 -0.02 1.77 16 34 H 0.40 10.99 8.48 -92.71 -0.79 10.20 16 35 H 0.40 15.34 8.34 -92.71 -0.77 14.57 16 36 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 37 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 38 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -78.17 334.26 -1.01 -79.18 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -0.47 Total: 23.76 kcal Atomic # 6 Polarization: 23.57 SS G_CDS: 6.26 Total: 29.83 kcal Atomic # 7 Polarization: -125.21 SS G_CDS: -7.92 Total: -133.13 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -0.91 Total: -44.60 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -78.17 -1.01 -79.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426429958.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.121 kcal (2) G-P(sol) polarization free energy of solvation -78.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds