Wall clock time and date at job start Tue Mar 31 2020 01:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99861 * 2 1 4 4 C 1.50705 * 109.46885 * 269.99410 * 3 2 1 5 5 C 1.41380 * 126.80327 * 94.71018 * 4 3 2 6 6 C 1.35451 * 103.98559 * 179.89096 * 5 4 3 7 7 O 1.34035 * 106.44458 * 0.36972 * 6 5 4 8 8 N 1.20924 * 111.57127 * 359.75031 * 7 6 5 9 9 C 1.34778 * 120.00063 * 179.97438 * 2 1 3 10 10 O 1.21579 * 120.00072 * 175.29468 * 9 2 1 11 11 N 1.34772 * 120.00006 * 355.56809 * 9 2 1 12 12 C 1.46496 * 120.00146 * 184.76687 * 11 9 2 13 13 C 1.52999 * 109.47085 * 174.82891 * 12 11 9 14 14 C 1.50704 * 115.55344 * 303.62295 * 13 12 11 15 15 H 1.08001 * 119.99684 * 118.15390 * 14 13 12 16 16 C 1.37879 * 119.99989 * 298.15804 * 14 13 12 17 17 N 1.31512 * 120.00103 * 189.19924 * 16 14 13 18 18 Si 1.86798 * 119.99934 * 9.19739 * 16 14 13 19 19 H 1.48497 * 109.47478 * 95.62486 * 18 16 14 20 20 H 1.48500 * 109.47086 * 215.62538 * 18 16 14 21 21 H 1.48507 * 109.47356 * 335.62438 * 18 16 14 22 22 C 1.53004 * 117.49733 * 157.95424 * 13 12 11 23 23 C 1.53007 * 117.49855 * 89.29802 * 13 12 11 24 24 H 1.09000 * 109.47776 * 272.89077 * 1 2 3 25 25 H 1.08998 * 109.47218 * 32.88688 * 1 2 3 26 26 H 1.09003 * 109.46944 * 152.88508 * 1 2 3 27 27 H 1.08996 * 109.47478 * 29.99189 * 3 2 1 28 28 H 1.08997 * 109.47444 * 149.99530 * 3 2 1 29 29 H 1.08002 * 128.00193 * 0.02562 * 5 4 3 30 30 H 1.08001 * 126.77539 * 180.09817 * 6 5 4 31 31 H 0.97004 * 119.99803 * 4.76125 * 11 9 2 32 32 H 1.09007 * 109.47085 * 294.82760 * 12 11 9 33 33 H 1.09006 * 109.47353 * 54.82853 * 12 11 9 34 34 H 0.96994 * 120.00210 * 179.97438 * 17 16 14 35 35 H 1.08997 * 117.49749 * 0.02562 * 22 13 12 36 36 H 1.09002 * 117.49740 * 145.01784 * 22 13 12 37 37 H 1.09002 * 117.49282 * 214.97730 * 23 13 12 38 38 H 1.08998 * 117.49837 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 6 1.6567 2.5881 -2.1886 6 6 2.2992 2.6534 -3.3792 7 8 3.3688 1.8520 -3.2776 8 7 3.4349 1.3349 -2.1864 9 6 2.1389 -1.1672 0.0005 10 8 3.3516 -1.1690 -0.0858 11 7 1.4680 -2.3326 0.0912 12 6 2.2038 -3.5950 0.1971 13 6 1.2169 -4.7436 0.4152 14 6 0.3073 -4.6014 1.6084 15 1 -0.7623 -4.5496 1.4687 16 6 0.8408 -4.5375 2.8782 17 7 0.0500 -4.5959 3.9274 18 14 2.6868 -4.3680 3.1083 19 1 3.0338 -2.9354 3.2882 20 1 3.1084 -5.1340 4.3086 21 1 3.3859 -4.9000 1.9109 22 6 1.6812 -6.1537 0.0449 23 6 0.6498 -5.4334 -0.8272 24 1 -0.3635 0.0518 1.0263 25 1 -0.3633 0.8630 -0.5580 26 1 -0.3633 -0.9148 -0.4684 27 1 1.6083 2.0284 0.5137 28 1 3.1498 1.1385 0.5139 29 1 0.7504 3.0959 -1.8931 30 1 2.0051 3.2330 -4.2417 31 1 0.4980 -2.3355 0.0865 32 1 2.7642 -3.7670 -0.7219 33 1 2.8938 -3.5439 1.0394 34 1 0.4253 -4.5513 4.8207 35 1 2.6897 -6.2631 -0.3537 36 1 1.3284 -6.9786 0.6641 37 1 -0.3810 -5.7846 -0.7814 38 1 0.9795 -5.0686 -1.8000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431053539.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:08 Heat of formation + Delta-G solvation = 78.995300 kcal Electronic energy + Delta-G solvation = -22077.128660 eV Core-core repulsion = 18732.083990 eV Total energy + Delta-G solvation = -3345.044670 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.96881 -39.74129 -37.22172 -35.70410 -34.01213 -33.12095 -32.19719 -31.69465 -28.37508 -26.98959 -25.79646 -24.63734 -23.19987 -21.61326 -21.30498 -19.56298 -19.24759 -17.99456 -17.68539 -17.42531 -16.53400 -15.81955 -15.75716 -15.15309 -14.69098 -14.13799 -13.91722 -13.55578 -13.39667 -13.18263 -12.88522 -12.76741 -12.42615 -12.20611 -12.08887 -12.01089 -11.17498 -11.05443 -10.66441 -10.45517 -10.35259 -10.13857 -9.77634 -9.66160 -9.51811 -9.14125 -8.72719 -8.64772 -8.55433 -8.03894 -6.19588 -4.20736 1.46610 2.06333 3.15076 3.22041 3.32154 3.40308 3.45279 3.65789 4.17236 4.38464 4.38911 4.52096 4.92990 5.04172 5.09839 5.17412 5.18705 5.29380 5.53716 5.59538 5.65190 5.74627 5.81901 5.91403 5.97539 6.17194 6.28470 6.43635 6.48107 6.62745 6.72385 6.93931 7.10380 7.20541 7.32782 7.68062 8.29555 8.39627 8.50514 8.82028 9.10532 9.45394 10.91270 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024345 B = 0.004850 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.849116 B = 5771.890195 C = 6011.230253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.634 5.634 3 C 0.213 3.787 4 C -0.006 4.006 5 C -0.227 4.227 6 C -0.072 4.072 7 O 0.101 5.899 8 N -0.333 5.333 9 C 0.700 3.300 10 O -0.590 6.590 11 N -0.716 5.716 12 C 0.164 3.836 13 C -0.015 4.015 14 C -0.489 4.489 15 H 0.077 0.923 16 C 0.087 3.913 17 N -0.891 5.891 18 Si 0.872 3.128 19 H -0.279 1.279 20 H -0.295 1.295 21 H -0.252 1.252 22 C -0.188 4.188 23 C -0.181 4.181 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.170 0.830 30 H 0.213 0.787 31 H 0.402 0.598 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.265 0.735 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.715 14.523 -11.541 18.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.373 5.373 3 C 0.088 3.912 4 C -0.166 4.166 5 C -0.249 4.249 6 C -0.153 4.153 7 O 0.032 5.968 8 N -0.033 5.033 9 C 0.401 3.599 10 O -0.468 6.468 11 N -0.371 5.371 12 C 0.040 3.960 13 C -0.016 4.016 14 C -0.525 4.525 15 H 0.095 0.905 16 C -0.117 4.117 17 N -0.527 5.527 18 Si 0.701 3.299 19 H -0.205 1.205 20 H -0.222 1.222 21 H -0.177 1.177 22 C -0.226 4.226 23 C -0.219 4.219 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.187 0.813 30 H 0.230 0.770 31 H 0.239 0.761 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.206 13.649 -11.172 17.680 hybrid contribution -0.447 0.654 0.260 0.834 sum 0.759 14.303 -10.912 18.007 Atomic orbital electron populations 1.21733 0.79496 1.02759 1.02215 1.46939 1.06344 1.04331 1.79664 1.19415 0.99004 0.84864 0.87913 1.24246 0.93142 0.98768 1.00479 1.22739 1.03752 1.04248 0.94128 1.26003 0.89863 0.98255 1.01197 1.84912 1.39545 1.44609 1.27780 1.74049 1.21891 1.15339 0.92060 1.15970 0.85348 0.80515 0.78106 1.90897 1.11887 1.86161 1.57850 1.45133 1.10446 1.04408 1.77109 1.21226 0.93381 0.81900 0.99515 1.19576 0.97402 0.88963 0.95706 1.20200 0.93320 1.51457 0.87569 0.90453 1.24865 0.97650 0.93446 0.95732 1.69905 1.35473 1.48952 0.98389 0.87113 0.86596 0.78616 0.77547 1.20472 1.22199 1.17684 1.23037 0.97109 0.98281 1.04197 1.22788 0.98344 1.06603 0.94124 0.92011 0.91472 0.91014 0.88318 0.88269 0.81267 0.77027 0.76090 0.93739 0.92184 0.92468 0.91100 0.89152 0.89641 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 10.21 59.85 0.61 1.59 16 2 N -0.63 -10.08 2.86 -188.75 -0.54 -10.61 16 3 C 0.21 2.92 5.97 -5.19 -0.03 2.89 16 4 C -0.01 -0.07 6.91 -82.10 -0.57 -0.64 16 5 C -0.23 -2.15 11.12 -39.38 -0.44 -2.58 16 6 C -0.07 -0.62 12.30 29.74 0.37 -0.25 16 7 O 0.10 1.32 11.20 17.19 0.19 1.51 16 8 N -0.33 -5.37 12.07 33.42 0.40 -4.97 16 9 C 0.70 14.47 8.26 -86.92 -0.72 13.75 16 10 O -0.59 -14.32 15.98 5.30 0.08 -14.24 16 11 N -0.72 -14.82 5.23 -65.23 -0.34 -15.16 16 12 C 0.16 3.70 4.69 -4.04 -0.02 3.68 16 13 C -0.02 -0.34 0.92 -155.65 -0.14 -0.49 16 14 C -0.49 -12.84 8.93 -34.44 -0.31 -13.15 16 15 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 16 C 0.09 2.41 5.47 -17.82 -0.10 2.31 16 17 N -0.89 -26.18 13.96 55.43 0.77 -25.40 16 18 Si 0.87 22.21 25.10 -169.99 -4.27 17.95 16 19 H -0.28 -7.35 7.11 56.52 0.40 -6.94 16 20 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 21 H -0.25 -6.17 5.64 56.52 0.32 -5.85 16 22 C -0.19 -3.93 9.58 -26.69 -0.26 -4.19 16 23 C -0.18 -3.57 9.93 -26.69 -0.27 -3.83 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 26 H 0.07 0.88 6.33 -51.93 -0.33 0.55 16 27 H 0.10 0.94 8.07 -51.93 -0.42 0.53 16 28 H 0.10 1.57 7.49 -51.93 -0.39 1.18 16 29 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.21 0.78 8.06 -52.49 -0.42 0.36 16 31 H 0.40 7.66 5.92 -40.82 -0.24 7.42 16 32 H 0.04 0.98 8.10 -51.93 -0.42 0.56 16 33 H 0.06 1.50 3.49 -51.93 -0.18 1.32 16 34 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 37 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 321.22 15.07 4.84 4.84 Total: -1.00 -34.76 321.22 -5.72 -40.48 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -5.00 Total: 6.52 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -1.87 Total: -0.91 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.30 Total: -56.14 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.28 Total: -12.73 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.27 Total: 17.95 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.76 -5.72 -40.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431053539.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.475 kcal (2) G-P(sol) polarization free energy of solvation -34.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds