Wall clock time and date at job start Tue Mar 31 2020 01:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99861 * 2 1 4 4 C 1.50705 * 109.46885 * 269.99410 * 3 2 1 5 5 C 1.41380 * 126.80327 * 94.71018 * 4 3 2 6 6 C 1.35451 * 103.98559 * 179.89096 * 5 4 3 7 7 O 1.34035 * 106.44458 * 0.36972 * 6 5 4 8 8 N 1.20924 * 111.57127 * 359.75031 * 7 6 5 9 9 C 1.34778 * 120.00063 * 179.97438 * 2 1 3 10 10 O 1.21579 * 120.00072 * 175.29468 * 9 2 1 11 11 N 1.34772 * 120.00006 * 355.56809 * 9 2 1 12 12 C 1.46496 * 120.00146 * 184.76687 * 11 9 2 13 13 C 1.52999 * 109.47085 * 174.82891 * 12 11 9 14 14 C 1.50704 * 115.55344 * 303.62295 * 13 12 11 15 15 H 1.08001 * 119.99684 * 118.15390 * 14 13 12 16 16 C 1.37879 * 119.99989 * 298.15804 * 14 13 12 17 17 N 1.31512 * 120.00103 * 189.19924 * 16 14 13 18 18 Si 1.86798 * 119.99934 * 9.19739 * 16 14 13 19 19 H 1.48497 * 109.47478 * 95.62486 * 18 16 14 20 20 H 1.48500 * 109.47086 * 215.62538 * 18 16 14 21 21 H 1.48507 * 109.47356 * 335.62438 * 18 16 14 22 22 C 1.53004 * 117.49733 * 157.95424 * 13 12 11 23 23 C 1.53007 * 117.49855 * 89.29802 * 13 12 11 24 24 H 1.09000 * 109.47776 * 272.89077 * 1 2 3 25 25 H 1.08998 * 109.47218 * 32.88688 * 1 2 3 26 26 H 1.09003 * 109.46944 * 152.88508 * 1 2 3 27 27 H 1.08996 * 109.47478 * 29.99189 * 3 2 1 28 28 H 1.08997 * 109.47444 * 149.99530 * 3 2 1 29 29 H 1.08002 * 128.00193 * 0.02562 * 5 4 3 30 30 H 1.08001 * 126.77539 * 180.09817 * 6 5 4 31 31 H 0.97004 * 119.99803 * 4.76125 * 11 9 2 32 32 H 1.09007 * 109.47085 * 294.82760 * 12 11 9 33 33 H 1.09006 * 109.47353 * 54.82853 * 12 11 9 34 34 H 0.96994 * 120.00210 * 179.97438 * 17 16 14 35 35 H 1.08997 * 117.49749 * 0.02562 * 22 13 12 36 36 H 1.09002 * 117.49740 * 145.01784 * 22 13 12 37 37 H 1.09002 * 117.49282 * 214.97730 * 23 13 12 38 38 H 1.08998 * 117.49837 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 6 1.6567 2.5881 -2.1886 6 6 2.2992 2.6534 -3.3792 7 8 3.3688 1.8520 -3.2776 8 7 3.4349 1.3349 -2.1864 9 6 2.1389 -1.1672 0.0005 10 8 3.3516 -1.1690 -0.0858 11 7 1.4680 -2.3326 0.0912 12 6 2.2038 -3.5950 0.1971 13 6 1.2169 -4.7436 0.4152 14 6 0.3073 -4.6014 1.6084 15 1 -0.7623 -4.5496 1.4687 16 6 0.8408 -4.5375 2.8782 17 7 0.0500 -4.5959 3.9274 18 14 2.6868 -4.3680 3.1083 19 1 3.0338 -2.9354 3.2882 20 1 3.1084 -5.1340 4.3086 21 1 3.3859 -4.9000 1.9109 22 6 1.6812 -6.1537 0.0449 23 6 0.6498 -5.4334 -0.8272 24 1 -0.3635 0.0518 1.0263 25 1 -0.3633 0.8630 -0.5580 26 1 -0.3633 -0.9148 -0.4684 27 1 1.6083 2.0284 0.5137 28 1 3.1498 1.1385 0.5139 29 1 0.7504 3.0959 -1.8931 30 1 2.0051 3.2330 -4.2417 31 1 0.4980 -2.3355 0.0865 32 1 2.7642 -3.7670 -0.7219 33 1 2.8938 -3.5439 1.0394 34 1 0.4253 -4.5513 4.8207 35 1 2.6897 -6.2631 -0.3537 36 1 1.3284 -6.9786 0.6641 37 1 -0.3810 -5.7846 -0.7814 38 1 0.9795 -5.0686 -1.8000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431053539.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:08 Heat of formation + Delta-G solvation = 53.978299 kcal Electronic energy + Delta-G solvation = -22078.213479 eV Core-core repulsion = 18732.083990 eV Total energy + Delta-G solvation = -3346.129489 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.88271 -41.25235 -38.91066 -37.01902 -35.37054 -34.42116 -34.29690 -32.55056 -29.56807 -28.51101 -27.47986 -26.21260 -24.05593 -23.21578 -22.32135 -21.28081 -20.76419 -19.38962 -18.66314 -18.48637 -18.27386 -17.38790 -17.25135 -16.72256 -15.84507 -15.74008 -15.35719 -14.98011 -14.89687 -14.60645 -14.27190 -14.01488 -13.85757 -13.69304 -13.33460 -13.15246 -13.03755 -12.60524 -12.14405 -12.10538 -11.99349 -11.58904 -11.45688 -11.08963 -10.93654 -10.73105 -10.52583 -10.44885 -10.10770 -9.56978 -8.36083 -6.36106 0.68269 1.16669 1.25351 1.33449 1.39325 1.86210 2.11710 2.27787 2.58118 2.89048 3.08510 3.29548 3.36573 3.66508 4.00871 4.21657 4.24615 4.26875 4.34394 4.44133 4.46092 4.50702 4.64956 4.69808 4.73996 4.83857 4.89115 4.89845 5.02979 5.21400 5.22663 5.45662 5.49435 5.59999 5.67603 5.87144 6.27453 6.68911 6.99571 7.31336 7.47750 7.54501 8.78312 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024345 B = 0.004850 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.849116 B = 5771.890195 C = 6011.230253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.628 5.628 3 C 0.209 3.791 4 C -0.025 4.025 5 C -0.222 4.222 6 C -0.057 4.057 7 O 0.087 5.913 8 N -0.393 5.393 9 C 0.691 3.309 10 O -0.634 6.634 11 N -0.716 5.716 12 C 0.171 3.829 13 C -0.042 4.042 14 C -0.470 4.470 15 H 0.053 0.947 16 C 0.047 3.953 17 N -0.932 5.932 18 Si 0.915 3.085 19 H -0.298 1.298 20 H -0.296 1.296 21 H -0.237 1.237 22 C -0.185 4.185 23 C -0.153 4.153 24 H 0.065 0.935 25 H 0.108 0.892 26 H 0.067 0.933 27 H 0.145 0.855 28 H 0.065 0.935 29 H 0.208 0.792 30 H 0.263 0.737 31 H 0.409 0.591 32 H 0.051 0.949 33 H 0.034 0.966 34 H 0.265 0.735 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.882 15.959 -13.754 21.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.366 5.366 3 C 0.085 3.915 4 C -0.184 4.184 5 C -0.243 4.243 6 C -0.138 4.138 7 O 0.018 5.982 8 N -0.097 5.097 9 C 0.392 3.608 10 O -0.516 6.516 11 N -0.372 5.372 12 C 0.046 3.954 13 C -0.043 4.043 14 C -0.507 4.507 15 H 0.071 0.929 16 C -0.152 4.152 17 N -0.571 5.571 18 Si 0.744 3.256 19 H -0.226 1.226 20 H -0.224 1.224 21 H -0.161 1.161 22 C -0.223 4.223 23 C -0.190 4.190 24 H 0.084 0.916 25 H 0.127 0.873 26 H 0.085 0.915 27 H 0.162 0.838 28 H 0.084 0.916 29 H 0.225 0.775 30 H 0.279 0.721 31 H 0.247 0.753 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.005 15.105 -13.411 20.200 hybrid contribution -0.168 0.305 0.849 0.918 sum -0.163 15.410 -12.562 19.882 Atomic orbital electron populations 1.21993 0.76901 1.04467 1.03215 1.47029 1.07944 1.03491 1.78092 1.19643 0.98228 0.84835 0.88810 1.24422 0.93825 0.99858 1.00297 1.23136 1.04488 1.03285 0.93400 1.27001 0.87718 0.96499 1.02534 1.84840 1.41233 1.45312 1.26767 1.74065 1.24190 1.17826 0.93585 1.16256 0.85016 0.81638 0.77928 1.90858 1.13948 1.86991 1.59772 1.45045 1.10654 1.04149 1.77354 1.21012 0.93100 0.82640 0.98630 1.19452 0.98331 0.90215 0.96339 1.20316 0.92743 1.49045 0.88611 0.92892 1.25337 0.99874 0.94100 0.95918 1.69985 1.36701 1.51655 0.98797 0.86431 0.84069 0.77247 0.77825 1.22578 1.22354 1.16073 1.23080 0.98653 0.96411 1.04189 1.22838 0.98380 1.03938 0.93852 0.91608 0.87339 0.91471 0.83756 0.91636 0.77527 0.72101 0.75292 0.93119 0.94847 0.92554 0.89228 0.89732 0.89178 0.88462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.64 10.21 127.77 1.31 2.95 16 2 N -0.63 -19.35 2.86 -869.33 -2.48 -21.84 16 3 C 0.21 5.53 5.97 85.63 0.51 6.04 16 4 C -0.02 -0.64 6.91 43.58 0.30 -0.34 16 5 C -0.22 -3.36 11.12 22.40 0.25 -3.11 16 6 C -0.06 -0.78 12.30 67.18 0.83 0.05 16 7 O 0.09 2.16 11.20 71.68 0.80 2.96 16 8 N -0.39 -12.73 12.07 -49.56 -0.60 -13.32 16 9 C 0.69 28.73 8.26 179.06 1.48 30.21 16 10 O -0.63 -31.69 15.98 -3.97 -0.06 -31.76 16 11 N -0.72 -29.43 5.23 -478.54 -2.50 -31.93 16 12 C 0.17 7.63 4.69 86.38 0.41 8.04 16 13 C -0.04 -1.86 0.92 -52.92 -0.05 -1.91 16 14 C -0.47 -24.66 8.93 25.60 0.23 -24.43 16 15 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 16 C 0.05 2.65 5.47 84.66 0.46 3.11 16 17 N -0.93 -55.76 13.96 21.45 0.30 -55.46 16 18 Si 0.91 46.62 25.10 68.60 1.72 48.34 16 19 H -0.30 -16.03 7.11 99.48 0.71 -15.32 16 20 H -0.30 -14.95 7.11 99.48 0.71 -14.25 16 21 H -0.24 -11.37 5.64 99.48 0.56 -10.81 16 22 C -0.19 -7.32 9.58 30.62 0.29 -7.02 16 23 C -0.15 -5.59 9.93 30.62 0.30 -5.29 16 24 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.11 1.45 8.09 -2.39 -0.02 1.44 16 26 H 0.07 1.52 6.33 -2.39 -0.02 1.51 16 27 H 0.14 2.36 8.07 -2.39 -0.02 2.34 16 28 H 0.07 2.16 7.49 -2.39 -0.02 2.15 16 29 H 0.21 1.39 8.06 -2.91 -0.02 1.37 16 30 H 0.26 0.52 8.06 -2.91 -0.02 0.50 16 31 H 0.41 15.33 5.92 -92.71 -0.55 14.78 16 32 H 0.05 2.18 8.10 -2.38 -0.02 2.16 16 33 H 0.03 1.68 3.49 -2.38 -0.01 1.67 16 34 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 36 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 37 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 38 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -79.40 321.22 3.88 -75.52 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.39 Total: 19.20 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 6.32 Total: 8.29 kcal Atomic # 7 Polarization: -117.27 SS G_CDS: -5.29 Total: -122.56 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: 0.74 Total: -28.79 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.72 Total: 48.34 kcal Total: -79.40 3.88 -75.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431053539.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.499 kcal (2) G-P(sol) polarization free energy of solvation -79.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds