Wall clock time and date at job start Tue Mar 31 2020 00:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47023 * 2 1 4 4 C 1.46497 * 120.00221 * 269.99563 * 3 2 1 5 5 C 1.50692 * 109.47167 * 270.00342 * 4 3 2 6 6 H 1.08004 * 120.00493 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99803 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00189 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99653 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47263 * 89.99923 * 9 7 5 11 11 H 1.48506 * 109.46985 * 209.99454 * 9 7 5 12 12 H 1.48495 * 109.47486 * 329.99757 * 9 7 5 13 13 C 1.34784 * 119.99868 * 89.99647 * 3 2 1 14 14 O 1.21281 * 119.99677 * 179.97438 * 13 3 2 15 15 C 1.50694 * 120.00040 * 0.02562 * 13 3 2 16 16 C 1.53002 * 109.47008 * 180.02562 * 15 13 3 17 17 N 1.46500 * 109.47266 * 180.02562 * 16 15 13 18 18 C 1.34743 * 120.04634 * 89.99227 * 17 16 15 19 19 N 1.30645 * 121.49165 * 179.74620 * 18 17 16 20 20 C 1.33516 * 121.50417 * 0.26069 * 19 18 17 21 21 C 1.36191 * 119.91272 * 359.97438 * 20 19 18 22 22 C 1.35028 * 120.03780 * 270.25672 * 17 16 15 23 23 O 1.21977 * 120.70946 * 359.97438 * 22 17 16 24 24 H 1.09001 * 109.46883 * 60.00601 * 1 2 3 25 25 H 1.09005 * 109.47293 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47578 * 300.00241 * 1 2 3 27 27 H 1.08993 * 109.47210 * 239.99653 * 2 1 3 28 28 H 1.09000 * 109.46742 * 119.99931 * 2 1 3 29 29 H 1.09004 * 109.46843 * 30.00586 * 4 3 2 30 30 H 1.08999 * 109.47002 * 149.99846 * 4 3 2 31 31 H 0.96998 * 120.00004 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.47303 * 60.00271 * 15 13 3 33 33 H 1.08999 * 109.47487 * 299.99989 * 15 13 3 34 34 H 1.08995 * 109.47679 * 60.00034 * 16 15 13 35 35 H 1.09009 * 109.46773 * 299.99708 * 16 15 13 36 36 H 1.08002 * 119.25583 * 0.03270 * 18 17 16 37 37 H 1.08007 * 120.04439 * 179.97438 * 20 19 18 38 38 H 1.08009 * 120.70566 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7036 6 1 4.3429 1.2308 -1.0956 7 6 4.1491 2.3896 -2.8778 8 7 3.3489 3.1249 -3.6185 9 14 5.9136 2.0966 -3.4166 10 1 5.9777 0.8752 -4.2589 11 1 6.3922 3.2638 -4.2002 12 1 6.7737 1.9179 -2.2193 13 6 2.2429 2.0166 1.1673 14 8 2.6475 3.1599 1.1672 15 6 1.9922 1.3060 2.4723 16 6 2.3228 2.2437 3.6352 17 7 2.0797 1.5527 4.9040 18 6 3.0678 0.8469 5.4879 19 7 2.8836 0.2240 6.6214 20 6 1.7064 0.2540 7.2507 21 6 0.6651 0.9460 6.7108 22 6 0.8635 1.6181 5.4870 23 8 -0.0426 2.2493 4.9689 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5817 1.6877 -2.0283 30 1 2.0955 3.1410 -1.1383 31 1 3.6748 3.5148 -4.4447 32 1 2.6228 0.4188 2.5299 33 1 0.9444 1.0114 2.5302 34 1 1.6920 3.1307 3.5775 35 1 3.3706 2.5386 3.5775 36 1 4.0353 0.7987 5.0104 37 1 1.5801 -0.2699 8.1868 38 1 -0.2926 0.9792 7.2092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432408882.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:16 Heat of formation + Delta-G solvation = -29.511696 kcal Electronic energy + Delta-G solvation = -21613.163263 eV Core-core repulsion = 18263.413376 eV Total energy + Delta-G solvation = -3349.749887 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.97047 -39.23344 -37.74923 -35.94295 -35.31635 -32.90245 -31.32862 -31.15577 -30.12252 -27.41769 -25.65018 -24.57432 -23.32503 -23.04419 -21.96073 -18.56850 -18.47918 -17.75777 -17.15361 -16.49353 -16.26523 -15.93171 -15.46146 -15.06757 -14.68812 -14.58342 -14.30830 -13.61895 -13.44865 -13.23218 -13.16844 -12.91610 -12.63162 -12.24496 -12.06160 -11.68696 -11.36073 -11.21032 -10.95343 -10.75748 -10.72985 -10.52010 -10.35297 -10.22353 -10.17624 -9.69056 -9.06903 -8.71068 -8.47702 -7.75227 -6.08378 -4.13651 0.39008 1.65334 2.23630 3.26165 3.27440 3.34121 3.37630 3.39998 3.81849 3.85742 4.30958 4.38914 4.44450 4.74867 4.76391 4.98104 5.06189 5.20866 5.26269 5.30761 5.41489 5.51246 5.55935 5.64520 5.78664 5.80347 6.00187 6.13047 6.18740 6.40674 6.45677 6.99574 7.39589 7.46805 7.51571 7.66841 7.87175 8.18280 8.32121 8.82500 8.98093 9.51500 10.99757 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.025665 B = 0.003920 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.714752 B = 7140.283621 C = 7555.209734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.593 5.593 4 C 0.246 3.754 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.512 3.488 14 O -0.542 6.542 15 C -0.156 4.156 16 C 0.102 3.898 17 N -0.518 5.518 18 C 0.379 3.621 19 N -0.549 5.549 20 C 0.149 3.851 21 C -0.292 4.292 22 C 0.513 3.487 23 O -0.532 6.532 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.033 0.967 30 H 0.044 0.956 31 H 0.264 0.736 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.205 0.795 37 H 0.165 0.835 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.615 -9.031 17.614 19.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.325 5.325 4 C 0.127 3.873 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.297 3.703 14 O -0.420 6.420 15 C -0.197 4.197 16 C -0.020 4.020 17 N -0.234 5.234 18 C 0.095 3.905 19 N -0.272 5.272 20 C 0.010 3.990 21 C -0.317 4.317 22 C 0.312 3.688 23 O -0.410 6.410 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.222 0.778 37 H 0.182 0.818 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.517 -8.333 17.518 19.562 hybrid contribution 0.256 0.080 -0.732 0.780 sum -2.261 -8.253 16.786 18.841 Atomic orbital electron populations 1.22227 0.96686 1.01499 1.02475 1.21430 0.93607 0.84092 1.02653 1.48249 1.63225 1.13288 1.07708 1.19299 0.96345 0.93690 0.77982 1.21410 0.96845 1.32067 1.06347 0.92451 1.24944 0.97894 0.94874 0.96390 1.69929 1.35728 1.33325 1.14262 0.86492 0.84580 0.77703 0.78596 1.20646 1.21073 1.19894 1.19889 0.78782 0.86827 0.84763 1.90694 1.46174 1.17895 1.87210 1.22018 1.04395 0.99693 0.93598 1.21897 1.05070 0.96203 0.78785 1.47012 1.12564 1.41475 1.22357 1.25156 0.93600 0.83309 0.88469 1.68438 1.24781 1.25079 1.08916 1.22657 0.87091 0.91509 0.97707 1.22956 1.03329 1.06949 0.98457 1.17389 0.81693 0.83119 0.86623 1.90987 1.40437 1.43453 1.66096 0.91911 0.92135 0.93030 0.89789 0.91862 0.94950 0.93796 0.92660 0.88898 0.88677 0.86959 0.87367 0.77848 0.81806 0.82907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 37.16 0.38 -1.94 16 2 C 0.11 1.64 5.93 -4.04 -0.02 1.61 16 3 N -0.59 -12.01 2.46 -175.07 -0.43 -12.44 16 4 C 0.25 6.27 5.16 -5.20 -0.03 6.24 16 5 C -0.53 -14.55 9.39 -34.44 -0.32 -14.87 16 6 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 9 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 C 0.51 9.94 7.67 -10.99 -0.08 9.85 16 14 O -0.54 -12.75 15.56 5.56 0.09 -12.66 16 15 C -0.16 -2.11 4.58 -27.89 -0.13 -2.24 16 16 C 0.10 1.28 4.66 -4.04 -0.02 1.26 16 17 N -0.52 -5.67 2.57 -121.10 -0.31 -5.99 16 18 C 0.38 3.16 11.48 -90.53 -1.04 2.12 16 19 N -0.55 -4.99 10.39 -14.48 -0.15 -5.14 16 20 C 0.15 1.23 11.20 -17.56 -0.20 1.04 16 21 C -0.29 -2.97 10.07 -39.26 -0.40 -3.36 16 22 C 0.51 6.80 7.45 -15.09 -0.11 6.69 16 23 O -0.53 -9.22 16.79 4.94 0.08 -9.13 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.70 7.22 -51.93 -0.38 0.33 16 27 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 28 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 29 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 30 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.09 1.01 7.40 -51.93 -0.38 0.63 16 33 H 0.09 1.30 7.19 -51.93 -0.37 0.92 16 34 H 0.11 1.69 7.42 -51.93 -0.39 1.31 16 35 H 0.11 1.18 7.97 -51.92 -0.41 0.76 16 36 H 0.21 0.95 8.03 -52.49 -0.42 0.53 16 37 H 0.16 0.83 8.06 -52.48 -0.42 0.40 16 38 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 328.95 15.07 4.96 4.96 Total: -1.00 -35.37 328.95 -7.26 -42.63 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -5.15 Total: -1.10 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -2.07 Total: 8.02 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.16 Total: -49.04 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: 0.17 Total: -21.79 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.37 -7.26 -42.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432408882.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.116 kcal (2) G-P(sol) polarization free energy of solvation -35.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds