Wall clock time and date at job start Tue Mar 31 2020 01:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35956 * 119.61135 * 2 1 4 4 C 1.35251 * 120.82190 * 180.02562 * 3 2 1 5 5 C 1.40224 * 120.03364 * 359.97438 * 4 3 2 6 6 C 1.36791 * 119.23472 * 0.02659 * 5 4 3 7 7 N 1.40212 * 120.40180 * 180.02562 * 6 5 4 8 8 C 1.34773 * 120.00258 * 121.59969 * 7 6 5 9 9 O 1.21592 * 120.00122 * 354.91153 * 8 7 6 10 10 N 1.34780 * 119.99761 * 174.91402 * 8 7 6 11 11 C 1.46499 * 119.99801 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47022 * 179.72008 * 11 10 8 13 13 C 1.52997 * 109.47020 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47350 * 180.02562 * 13 12 11 15 15 H 1.07995 * 119.99614 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00104 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99697 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00068 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47266 * 90.00249 * 18 16 14 20 20 H 1.48501 * 109.46929 * 210.00190 * 18 16 14 21 21 H 1.48494 * 109.46983 * 330.00045 * 18 16 14 22 22 C 1.34668 * 119.61780 * 180.31472 * 2 1 3 23 23 O 1.22072 * 120.03158 * 359.97438 * 22 2 1 24 24 H 1.09000 * 109.47382 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.46740 * 120.00277 * 1 2 3 26 26 H 1.08996 * 109.47393 * 239.99633 * 1 2 3 27 27 H 1.08000 * 119.58927 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.99005 * 180.02562 * 4 3 2 29 29 H 1.07992 * 120.38164 * 180.02562 * 5 4 3 30 30 H 0.97004 * 119.99713 * 301.60667 * 7 6 5 31 31 H 0.96997 * 120.00335 * 359.72046 * 10 8 7 32 32 H 1.09003 * 109.47053 * 299.72221 * 11 10 8 33 33 H 1.09004 * 109.47209 * 59.71971 * 11 10 8 34 34 H 1.08999 * 109.46929 * 299.99832 * 12 11 10 35 35 H 1.08999 * 109.46733 * 60.00065 * 12 11 10 36 36 H 1.09003 * 109.47199 * 300.00300 * 13 12 11 37 37 H 1.08997 * 109.47268 * 59.99735 * 13 12 11 38 38 H 0.97002 * 119.99633 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1368 1.1820 0.0000 4 6 3.4890 1.2106 -0.0005 5 6 4.2163 0.0117 -0.0005 6 6 3.5423 -1.1786 -0.0006 7 7 4.2450 -2.3919 0.0000 8 6 4.0531 -3.2814 0.9942 9 8 3.3422 -2.9944 1.9379 10 7 4.6494 -4.4890 0.9423 11 6 4.4403 -5.4561 2.0227 12 6 5.2177 -6.7381 1.7171 13 6 4.9999 -7.7478 2.8458 14 6 5.7660 -9.0102 2.5452 15 1 6.3494 -9.0850 1.6395 16 6 5.7211 -10.0701 3.4259 17 7 6.3893 -11.1720 3.1633 18 14 4.7113 -9.9409 4.9921 19 1 3.3304 -10.4209 4.7317 20 1 5.3334 -10.7743 6.0522 21 1 4.6675 -8.5250 5.4374 22 6 2.1306 -1.1707 -0.0064 23 8 1.5138 -2.2241 -0.0117 24 1 -0.3634 1.0276 0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 -0.3634 -0.5139 0.8899 27 1 1.5838 2.1097 0.0004 28 1 4.0090 2.1572 -0.0001 29 1 5.2961 0.0280 -0.0005 30 1 4.8693 -2.5911 -0.7152 31 1 5.2133 -4.7195 0.1875 32 1 4.7934 -5.0324 2.9629 33 1 3.3779 -5.6860 2.1041 34 1 4.8645 -7.1617 0.7770 35 1 6.2800 -6.5081 1.6358 36 1 5.3533 -7.3239 3.7858 37 1 3.9376 -7.9777 2.9276 38 1 6.3581 -11.9175 3.7831 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438290228.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:45 Heat of formation + Delta-G solvation = -29.402274 kcal Electronic energy + Delta-G solvation = -20895.736342 eV Core-core repulsion = 17545.991200 eV Total energy + Delta-G solvation = -3349.745142 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.64316 -39.67379 -37.04467 -36.19221 -35.11977 -33.47184 -32.99846 -31.32421 -29.34538 -27.96450 -26.98803 -24.02547 -23.04977 -22.58335 -20.94800 -20.29967 -18.44699 -18.08045 -17.50604 -17.04799 -16.63885 -16.14583 -15.68834 -15.32430 -14.81746 -14.60602 -14.17490 -14.05414 -13.78221 -13.33462 -13.11508 -12.86509 -12.64399 -12.50499 -12.06491 -11.94389 -11.84961 -11.00209 -10.86889 -10.70840 -10.22660 -10.16601 -9.95006 -9.76956 -9.63381 -9.39143 -9.17825 -8.71235 -8.51112 -7.92872 -6.02282 -4.00565 0.51000 1.65883 2.23958 2.84109 3.29079 3.35697 3.42667 3.48102 3.55042 4.17986 4.25482 4.44340 4.48903 4.65223 4.83147 4.94477 4.97265 5.26893 5.32147 5.39440 5.61292 5.71033 5.77400 5.84366 6.11489 6.16804 6.44245 6.53177 6.54511 6.74666 6.81628 6.89155 6.98744 7.29639 7.42852 7.80352 7.86965 8.11718 8.54759 8.78167 9.01777 9.60315 11.11004 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.038540 B = 0.002851 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.343317 B = 9819.574551 C =10163.968368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.499 5.499 3 C 0.120 3.880 4 C -0.218 4.218 5 C -0.043 4.043 6 C 0.055 3.945 7 N -0.681 5.681 8 C 0.707 3.293 9 O -0.573 6.573 10 N -0.738 5.738 11 C 0.134 3.866 12 C -0.112 4.112 13 C -0.011 4.011 14 C -0.520 4.520 15 H 0.072 0.928 16 C 0.066 3.934 17 N -0.904 5.904 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.264 1.264 22 C 0.513 3.487 23 O -0.521 6.521 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.162 0.838 28 H 0.148 0.852 29 H 0.137 0.863 30 H 0.405 0.595 31 H 0.395 0.605 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.019 0.981 37 H 0.015 0.985 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.087 30.306 -10.125 32.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.212 5.212 3 C -0.007 4.007 4 C -0.242 4.242 5 C -0.067 4.067 6 C -0.044 4.044 7 N -0.333 5.333 8 C 0.408 3.592 9 O -0.449 6.449 10 N -0.392 5.392 11 C 0.010 3.990 12 C -0.150 4.150 13 C -0.049 4.049 14 C -0.558 4.558 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.543 5.543 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.188 1.188 22 C 0.311 3.689 23 O -0.400 6.400 24 H 0.106 0.894 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.179 0.821 28 H 0.166 0.834 29 H 0.155 0.845 30 H 0.241 0.759 31 H 0.229 0.771 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.171 29.574 -9.135 32.013 hybrid contribution 0.133 -0.207 0.090 0.262 sum -8.038 29.367 -9.044 31.762 Atomic orbital electron populations 1.22113 0.76974 1.03702 1.04702 1.45384 1.09167 1.06484 1.60181 1.21967 0.93940 0.89243 0.95504 1.20442 0.92374 0.98902 1.12523 1.21460 1.00986 0.90885 0.93413 1.17821 0.89972 0.86144 1.10464 1.42116 1.46544 1.17032 1.27620 1.15903 0.80437 0.80466 0.82397 1.90919 1.41815 1.78051 1.34091 1.45237 1.53214 1.13998 1.26753 1.21528 1.00886 0.88039 0.88499 1.21704 0.99086 0.93110 1.01136 1.19504 0.96959 0.94546 0.93922 1.21104 1.29576 0.97064 1.08102 0.91007 1.25026 0.95241 0.95148 0.98091 1.69917 1.42429 1.04728 1.37252 0.86772 0.80557 0.78610 0.83367 1.20236 1.21410 1.18846 1.17148 0.88691 0.83157 0.79930 1.91014 1.69292 1.29252 1.50405 0.89357 0.90174 0.90008 0.82065 0.83422 0.84518 0.75899 0.77143 0.91965 0.91900 0.92115 0.92111 0.96270 0.96684 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 10.06 59.85 0.60 1.05 16 2 N -0.50 -4.74 2.99 -126.95 -0.38 -5.12 16 3 C 0.12 0.69 10.30 -16.79 -0.17 0.51 16 4 C -0.22 -1.27 10.00 -39.90 -0.40 -1.67 16 5 C -0.04 -0.36 10.01 -39.36 -0.39 -0.75 16 6 C 0.05 0.68 5.71 -83.43 -0.48 0.21 16 7 N -0.68 -8.79 5.19 -14.07 -0.07 -8.87 16 8 C 0.71 12.18 7.89 -86.92 -0.69 11.49 16 9 O -0.57 -12.49 15.31 -7.58 -0.12 -12.61 16 10 N -0.74 -11.54 5.56 -65.22 -0.36 -11.90 16 11 C 0.13 2.45 5.67 -4.04 -0.02 2.43 16 12 C -0.11 -2.21 5.27 -26.73 -0.14 -2.35 16 13 C -0.01 -0.28 4.04 -27.88 -0.11 -0.39 16 14 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 16 15 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -28.27 13.96 55.43 0.77 -27.49 16 18 Si 0.88 22.31 27.47 -169.99 -4.67 17.64 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 21 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 22 C 0.51 7.36 6.97 -15.19 -0.11 7.25 16 23 O -0.52 -9.84 15.59 -8.01 -0.12 -9.96 16 24 H 0.09 0.22 7.72 -51.93 -0.40 -0.18 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.16 0.21 7.82 -52.49 -0.41 -0.20 16 28 H 0.15 0.39 8.06 -52.49 -0.42 -0.03 16 29 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 30 H 0.40 3.63 8.84 -40.82 -0.36 3.27 16 31 H 0.40 4.86 8.49 -40.82 -0.35 4.52 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 37 H 0.01 0.36 7.57 -51.93 -0.39 -0.03 16 38 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 326.79 15.07 4.92 4.92 Total: -1.00 -40.48 326.79 -7.62 -48.10 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -5.25 Total: 1.00 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -2.34 Total: 4.30 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.04 Total: -53.39 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.24 Total: -22.57 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -40.48 -7.62 -48.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438290228.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.701 kcal (2) G-P(sol) polarization free energy of solvation -40.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds