Wall clock time and date at job start Tue Mar 31 2020 01:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35956 * 119.61135 * 2 1 4 4 C 1.35251 * 120.82190 * 180.02562 * 3 2 1 5 5 C 1.40224 * 120.03364 * 359.97438 * 4 3 2 6 6 C 1.36791 * 119.23472 * 0.02659 * 5 4 3 7 7 N 1.40212 * 120.40180 * 180.02562 * 6 5 4 8 8 C 1.34773 * 120.00258 * 121.59969 * 7 6 5 9 9 O 1.21592 * 120.00122 * 354.91153 * 8 7 6 10 10 N 1.34780 * 119.99761 * 174.91402 * 8 7 6 11 11 C 1.46499 * 119.99801 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47022 * 179.72008 * 11 10 8 13 13 C 1.52997 * 109.47020 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47350 * 180.02562 * 13 12 11 15 15 H 1.07995 * 119.99614 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00104 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99697 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00068 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47266 * 90.00249 * 18 16 14 20 20 H 1.48501 * 109.46929 * 210.00190 * 18 16 14 21 21 H 1.48494 * 109.46983 * 330.00045 * 18 16 14 22 22 C 1.34668 * 119.61780 * 180.31472 * 2 1 3 23 23 O 1.22072 * 120.03158 * 359.97438 * 22 2 1 24 24 H 1.09000 * 109.47382 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.46740 * 120.00277 * 1 2 3 26 26 H 1.08996 * 109.47393 * 239.99633 * 1 2 3 27 27 H 1.08000 * 119.58927 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.99005 * 180.02562 * 4 3 2 29 29 H 1.07992 * 120.38164 * 180.02562 * 5 4 3 30 30 H 0.97004 * 119.99713 * 301.60667 * 7 6 5 31 31 H 0.96997 * 120.00335 * 359.72046 * 10 8 7 32 32 H 1.09003 * 109.47053 * 299.72221 * 11 10 8 33 33 H 1.09004 * 109.47209 * 59.71971 * 11 10 8 34 34 H 1.08999 * 109.46929 * 299.99832 * 12 11 10 35 35 H 1.08999 * 109.46733 * 60.00065 * 12 11 10 36 36 H 1.09003 * 109.47199 * 300.00300 * 13 12 11 37 37 H 1.08997 * 109.47268 * 59.99735 * 13 12 11 38 38 H 0.97002 * 119.99633 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1368 1.1820 0.0000 4 6 3.4890 1.2106 -0.0005 5 6 4.2163 0.0117 -0.0005 6 6 3.5423 -1.1786 -0.0006 7 7 4.2450 -2.3919 0.0000 8 6 4.0531 -3.2814 0.9942 9 8 3.3422 -2.9944 1.9379 10 7 4.6494 -4.4890 0.9423 11 6 4.4403 -5.4561 2.0227 12 6 5.2177 -6.7381 1.7171 13 6 4.9999 -7.7478 2.8458 14 6 5.7660 -9.0102 2.5452 15 1 6.3494 -9.0850 1.6395 16 6 5.7211 -10.0701 3.4259 17 7 6.3893 -11.1720 3.1633 18 14 4.7113 -9.9409 4.9921 19 1 3.3304 -10.4209 4.7317 20 1 5.3334 -10.7743 6.0522 21 1 4.6675 -8.5250 5.4374 22 6 2.1306 -1.1707 -0.0064 23 8 1.5138 -2.2241 -0.0117 24 1 -0.3634 1.0276 0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 -0.3634 -0.5139 0.8899 27 1 1.5838 2.1097 0.0004 28 1 4.0090 2.1572 -0.0001 29 1 5.2961 0.0280 -0.0005 30 1 4.8693 -2.5911 -0.7152 31 1 5.2133 -4.7195 0.1875 32 1 4.7934 -5.0324 2.9629 33 1 3.3779 -5.6860 2.1041 34 1 4.8645 -7.1617 0.7770 35 1 6.2800 -6.5081 1.6358 36 1 5.3533 -7.3239 3.7858 37 1 3.9376 -7.9777 2.9276 38 1 6.3581 -11.9175 3.7831 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438290228.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:44 Heat of formation + Delta-G solvation = -60.909553 kcal Electronic energy + Delta-G solvation = -20897.102600 eV Core-core repulsion = 17545.991200 eV Total energy + Delta-G solvation = -3351.111400 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.44878 -40.86281 -37.94601 -37.36060 -36.47113 -35.17661 -34.16196 -33.10154 -30.25012 -28.76191 -28.53323 -25.20185 -24.02966 -23.74586 -22.31336 -21.93018 -19.61395 -19.12037 -18.74290 -18.32115 -17.72966 -16.92959 -16.75848 -16.70113 -16.27846 -15.74031 -15.55848 -15.28540 -15.23444 -14.77724 -14.16601 -13.85459 -13.76808 -13.58534 -13.43116 -13.04093 -12.76874 -12.73809 -12.71070 -11.95510 -11.79691 -11.69717 -11.61179 -11.35783 -11.31527 -11.01088 -10.77128 -10.40847 -9.98745 -8.71121 -8.30418 -6.34040 -0.15312 0.95483 1.36192 1.36978 1.45686 1.49693 1.86503 2.15509 2.35642 2.68920 3.05180 3.25600 3.71850 3.92621 4.07215 4.14891 4.18524 4.24942 4.37305 4.46036 4.48116 4.73755 4.78864 4.86997 4.87272 5.02330 5.11182 5.26428 5.37978 5.48926 5.54074 5.55996 5.63661 5.75043 5.89308 6.10727 6.26619 6.73311 6.98996 7.04802 7.30638 7.57000 8.86001 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.038540 B = 0.002851 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.343317 B = 9819.574551 C =10163.968368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.499 5.499 3 C 0.134 3.866 4 C -0.222 4.222 5 C -0.007 4.007 6 C -0.016 4.016 7 N -0.664 5.664 8 C 0.702 3.298 9 O -0.625 6.625 10 N -0.729 5.729 11 C 0.148 3.852 12 C -0.097 4.097 13 C -0.012 4.012 14 C -0.530 4.530 15 H 0.039 0.961 16 C 0.006 3.994 17 N -0.949 5.949 18 Si 0.946 3.054 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.249 1.249 22 C 0.490 3.510 23 O -0.595 6.595 24 H 0.143 0.857 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.219 0.781 28 H 0.193 0.807 29 H 0.162 0.838 30 H 0.420 0.580 31 H 0.412 0.588 32 H 0.057 0.943 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.023 0.977 37 H 0.016 0.984 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.262 34.601 -10.144 36.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.209 5.209 3 C 0.008 3.992 4 C -0.245 4.245 5 C -0.031 4.031 6 C -0.113 4.113 7 N -0.316 5.316 8 C 0.403 3.597 9 O -0.505 6.505 10 N -0.385 5.385 11 C 0.024 3.976 12 C -0.135 4.135 13 C -0.050 4.050 14 C -0.568 4.568 15 H 0.058 0.942 16 C -0.191 4.191 17 N -0.590 5.590 18 Si 0.770 3.230 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.173 1.173 22 C 0.291 3.709 23 O -0.480 6.480 24 H 0.161 0.839 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.236 0.764 28 H 0.210 0.790 29 H 0.180 0.820 30 H 0.259 0.741 31 H 0.248 0.752 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.041 0.959 37 H 0.034 0.966 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.313 33.955 -9.226 36.155 hybrid contribution 0.221 -1.303 -0.014 1.322 sum -8.092 32.652 -9.240 34.886 Atomic orbital electron populations 1.22332 0.75694 1.06701 1.03231 1.45538 1.10342 1.06608 1.58371 1.23016 0.94694 0.89453 0.92079 1.21065 0.92613 0.99504 1.11277 1.21928 1.02454 0.90218 0.88549 1.18054 0.89690 0.87012 1.16573 1.41807 1.46358 1.16776 1.26683 1.16149 0.79846 0.81011 0.82711 1.90862 1.44060 1.79135 1.36434 1.44952 1.53447 1.13399 1.26706 1.21143 0.99386 0.87892 0.89220 1.21468 0.99917 0.92622 0.99498 1.19464 0.96140 0.93704 0.95695 1.21440 1.29359 0.99048 1.06930 0.94242 1.25959 0.96537 0.94730 1.01889 1.70054 1.44305 1.05754 1.38897 0.85710 0.78908 0.79438 0.78947 1.19445 1.20700 1.17274 1.17627 0.89674 0.83673 0.79941 1.90949 1.70574 1.31783 1.54726 0.83902 0.91076 0.92301 0.76420 0.78991 0.82003 0.74066 0.75183 0.92433 0.93690 0.91906 0.91129 0.95896 0.96560 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.76 10.06 127.77 1.28 2.04 16 2 N -0.50 -8.67 2.99 -673.68 -2.01 -10.68 16 3 C 0.13 0.89 10.30 83.36 0.86 1.75 16 4 C -0.22 -1.45 10.00 22.06 0.22 -1.23 16 5 C -0.01 -0.10 10.01 22.41 0.22 0.13 16 6 C -0.02 -0.39 5.71 38.18 0.22 -0.18 16 7 N -0.66 -17.31 5.19 -316.70 -1.65 -18.96 16 8 C 0.70 24.87 7.89 179.05 1.41 26.28 16 9 O -0.63 -28.47 15.31 8.30 0.13 -28.34 16 10 N -0.73 -23.05 5.56 -478.52 -2.66 -25.71 16 11 C 0.15 5.48 5.67 86.38 0.49 5.97 16 12 C -0.10 -3.81 5.27 30.59 0.16 -3.65 16 13 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 14 C -0.53 -31.11 9.66 25.60 0.25 -30.86 16 15 H 0.04 2.50 7.99 -2.91 -0.02 2.47 16 16 C 0.01 0.35 5.47 84.65 0.46 0.81 16 17 N -0.95 -60.54 13.96 21.45 0.30 -60.24 16 18 Si 0.95 46.01 27.47 68.60 1.88 47.90 16 19 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 20 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 21 H -0.25 -11.43 6.54 99.48 0.65 -10.78 16 22 C 0.49 14.41 6.97 84.98 0.59 15.00 16 23 O -0.59 -24.22 15.59 6.75 0.11 -24.11 16 24 H 0.14 0.10 7.72 -2.39 -0.02 0.08 16 25 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.22 -1.06 7.82 -2.91 -0.02 -1.08 16 28 H 0.19 -0.36 8.06 -2.91 -0.02 -0.39 16 29 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 30 H 0.42 7.41 8.84 -92.71 -0.82 6.59 16 31 H 0.41 9.99 8.49 -92.71 -0.79 9.20 16 32 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.02 1.09 7.20 -2.39 -0.02 1.07 16 37 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 38 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -95.65 326.79 1.81 -93.84 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -0.58 Total: 10.71 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 6.29 Total: 15.60 kcal Atomic # 7 Polarization: -109.57 SS G_CDS: -6.02 Total: -115.59 kcal Atomic # 8 Polarization: -52.68 SS G_CDS: 0.23 Total: -52.45 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.88 Total: 47.90 kcal Total: -95.65 1.81 -93.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438290228.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.926 kcal (2) G-P(sol) polarization free energy of solvation -95.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds