Wall clock time and date at job start Tue Mar 31 2020 01:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47506 * 103.05210 * 3 2 1 5 5 C 1.37095 * 120.00322 * 95.86308 * 4 3 2 6 6 H 1.07994 * 120.00413 * 162.55728 * 5 4 3 7 7 C 1.38956 * 119.99743 * 342.27863 * 5 4 3 8 8 N 1.31410 * 119.99866 * 337.17936 * 7 5 4 9 9 Si 1.86800 * 119.99713 * 157.18003 * 7 5 4 10 10 H 1.48494 * 109.47488 * 60.00274 * 9 7 5 11 11 H 1.48506 * 109.46942 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47372 * 299.99851 * 9 7 5 13 13 C 1.34778 * 119.99888 * 275.86582 * 4 3 2 14 14 O 1.21292 * 119.99980 * 179.97438 * 13 4 3 15 15 C 1.50705 * 119.99829 * 359.97438 * 13 4 3 16 16 N 1.46905 * 109.46939 * 180.02562 * 15 13 4 17 17 C 1.47186 * 110.99710 * 188.93431 * 16 15 13 18 18 C 1.53002 * 108.71328 * 167.61854 * 17 16 15 19 19 N 1.46010 * 110.03865 * 50.30876 * 18 17 16 20 20 C 1.46500 * 118.53594 * 161.86364 * 19 18 17 21 21 C 1.33718 * 122.92670 * 341.83345 * 19 18 17 22 22 O 1.21282 * 118.62368 * 181.68743 * 21 19 18 23 23 C 1.46903 * 110.99981 * 66.04313 * 16 15 13 24 24 H 4.40643 * 5.51459 * 180.02562 * 4 1 2 25 25 H 1.09007 * 109.46974 * 343.04542 * 3 2 1 26 26 H 1.09000 * 109.46910 * 223.05188 * 3 2 1 27 27 H 0.97006 * 119.99639 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.46657 * 299.99583 * 15 13 4 29 29 H 1.09001 * 109.47255 * 60.00147 * 15 13 4 30 30 H 1.08995 * 109.59774 * 287.40657 * 17 16 15 31 31 H 1.09000 * 109.59631 * 47.86687 * 17 16 15 32 32 H 1.08998 * 109.37880 * 290.12991 * 18 17 16 33 33 H 1.09005 * 109.27851 * 170.42185 * 18 17 16 34 34 H 1.08997 * 109.47131 * 179.97438 * 20 19 18 35 35 H 1.09004 * 109.47039 * 299.97381 * 20 19 18 36 36 H 1.08997 * 109.47451 * 59.97185 * 20 19 18 37 37 H 1.08997 * 109.38824 * 293.81918 * 23 16 15 38 38 H 1.09000 * 109.38460 * 53.61421 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1342 0.3128 -1.3454 5 6 3.4765 1.6003 -1.6690 6 1 4.0891 1.7944 -2.5370 7 6 3.0305 2.6560 -0.8833 8 7 1.9608 2.5112 -0.1339 9 14 3.9516 4.2812 -0.8924 10 1 3.9605 4.8374 -2.2692 11 1 3.2785 5.2367 0.0237 12 1 5.3482 4.0612 -0.4384 13 6 3.2469 -0.6658 -2.2653 14 8 3.6507 -0.4073 -3.3794 15 6 2.8710 -2.0812 -1.9095 16 7 3.0826 -2.9514 -3.0740 17 6 2.5302 -4.2948 -2.8359 18 6 2.4955 -5.0538 -4.1639 19 7 3.7968 -4.9722 -4.8210 20 6 4.1093 -5.9381 -5.8772 21 6 4.7158 -4.0547 -4.5021 22 8 5.7594 -4.0385 -5.1198 23 6 4.5096 -3.0428 -3.4107 24 1 -1.0501 0.0002 0.0001 25 1 3.0097 -0.9822 0.2997 26 1 3.0089 0.7518 0.7016 27 1 1.6493 3.2484 0.4143 28 1 3.4918 -2.4248 -1.0821 29 1 1.8220 -2.1157 -1.6155 30 1 3.1613 -4.8289 -2.1256 31 1 1.5192 -4.2090 -2.4375 32 1 1.7355 -4.6160 -4.8110 33 1 2.2508 -6.0991 -3.9747 34 1 5.1100 -5.7435 -6.2630 35 1 4.0670 -6.9483 -5.4698 36 1 3.3834 -5.8413 -6.6845 37 1 4.8647 -2.0692 -3.7483 38 1 5.0711 -3.3463 -2.5271 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490961716.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:37 Heat of formation + Delta-G solvation = 27.599548 kcal Electronic energy + Delta-G solvation = -22145.742341 eV Core-core repulsion = 18798.468984 eV Total energy + Delta-G solvation = -3347.273357 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.38719 -38.76586 -36.89181 -35.43646 -34.72136 -32.18263 -31.26298 -30.09075 -29.16660 -26.82538 -26.21856 -24.83132 -23.98865 -22.38058 -19.12643 -18.57304 -17.92054 -17.12019 -16.59356 -16.46900 -16.08268 -15.94320 -14.85212 -14.73737 -14.43091 -14.23796 -13.95825 -13.65342 -13.20682 -12.85887 -12.77740 -12.42066 -12.33982 -12.06087 -11.98406 -11.75615 -11.64819 -11.35493 -11.11941 -10.97773 -10.54010 -10.32143 -9.68493 -9.42317 -9.25992 -8.95392 -8.73844 -8.59825 -8.06496 -7.87151 -6.35586 -3.86744 2.74904 3.03318 3.17010 3.25011 3.28111 3.57213 3.81434 3.91834 3.98327 4.18762 4.60743 4.71488 4.84780 5.01385 5.12914 5.16398 5.30756 5.36729 5.39922 5.45153 5.54264 5.61322 5.64431 5.78658 5.83681 5.93075 6.10261 6.22226 6.40560 6.67187 6.91769 6.96367 7.06180 7.44346 7.55747 8.03766 8.25094 8.41112 8.75042 9.12581 9.33199 9.88830 10.65387 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.026000 B = 0.004693 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.672607 B = 5964.877304 C = 6810.472307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.117 4.117 3 C 0.231 3.769 4 N -0.440 5.440 5 C -0.316 4.316 6 H 0.105 0.895 7 C 0.033 3.967 8 N -0.861 5.861 9 Si 0.920 3.080 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.451 3.549 14 O -0.564 6.564 15 C 0.044 3.956 16 N -0.510 5.510 17 C 0.032 3.968 18 C 0.123 3.877 19 N -0.611 5.611 20 C 0.074 3.926 21 C 0.528 3.472 22 O -0.554 6.554 23 C 0.037 3.963 24 H 0.199 0.801 25 H 0.061 0.939 26 H 0.109 0.891 27 H 0.268 0.732 28 H 0.051 0.949 29 H 0.098 0.902 30 H 0.043 0.957 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.141 0.859 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.895 -14.583 0.670 14.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.119 4.119 3 C 0.108 3.892 4 N -0.159 5.159 5 C -0.443 4.443 6 H 0.122 0.878 7 C -0.172 4.172 8 N -0.498 5.498 9 Si 0.746 3.254 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.239 3.761 14 O -0.446 6.446 15 C -0.086 4.086 16 N -0.236 5.236 17 C -0.096 4.096 18 C -0.001 4.001 19 N -0.345 5.345 20 C -0.069 4.069 21 C 0.317 3.683 22 O -0.432 6.432 23 C -0.093 4.093 24 H 0.216 0.784 25 H 0.078 0.922 26 H 0.127 0.873 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.116 0.884 30 H 0.061 0.939 31 H 0.115 0.885 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.158 0.842 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.472 -14.079 -0.474 14.163 hybrid contribution 0.106 0.593 0.946 1.122 sum -1.366 -13.486 0.473 13.563 Atomic orbital electron populations 1.24285 0.95378 1.06107 1.01788 1.23172 0.94353 0.95613 0.98715 1.18244 0.84317 0.99303 0.87352 1.43706 1.56199 1.07662 1.08369 1.19607 1.30194 0.80645 1.13883 0.87763 1.25268 0.95039 0.99423 0.97429 1.70094 1.18639 1.33256 1.27854 0.86098 0.79694 0.81154 0.78411 1.19833 1.21094 1.19893 1.19816 0.84823 0.86170 0.85304 1.90509 1.50163 1.83024 1.20951 1.22057 1.02566 0.93322 0.90692 1.62127 1.14779 1.09251 1.37443 1.22550 1.01740 0.89555 0.95798 1.21484 0.84716 0.99966 0.93885 1.47325 1.16502 1.32415 1.38290 1.21696 1.03426 0.91300 0.90491 1.20296 0.82870 0.80695 0.84401 1.90675 1.27124 1.72761 1.52639 1.22520 0.89411 1.01315 0.96060 0.78369 0.92153 0.87339 0.92109 0.93064 0.88420 0.93900 0.88487 0.90755 0.90491 0.89282 0.92519 0.92341 0.84194 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.03 19.25 29.55 0.57 -4.46 16 2 C -0.12 -2.47 10.85 -37.12 -0.40 -2.88 16 3 C 0.23 4.82 4.91 -6.83 -0.03 4.79 16 4 N -0.44 -10.64 2.60 -117.93 -0.31 -10.95 16 5 C -0.32 -8.48 9.31 -14.93 -0.14 -8.62 16 6 H 0.10 2.97 7.40 -52.49 -0.39 2.58 16 7 C 0.03 0.84 4.83 -17.47 -0.08 0.76 16 8 N -0.86 -22.07 9.58 55.50 0.53 -21.54 16 9 Si 0.92 20.20 29.61 -169.99 -5.03 15.17 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 13 C 0.45 10.44 7.32 -10.98 -0.08 10.36 16 14 O -0.56 -15.07 13.96 5.55 0.08 -14.99 16 15 C 0.04 0.77 4.04 -4.97 -0.02 0.75 16 16 N -0.51 -8.33 4.47 -237.54 -1.06 -9.39 16 17 C 0.03 0.37 5.60 -3.67 -0.02 0.35 16 18 C 0.12 1.28 6.64 -4.31 -0.03 1.25 16 19 N -0.61 -8.22 3.23 -182.46 -0.59 -8.81 16 20 C 0.07 0.79 10.55 59.85 0.63 1.43 16 21 C 0.53 9.03 7.57 -11.67 -0.09 8.95 16 22 O -0.55 -11.12 16.07 5.56 0.09 -11.03 16 23 C 0.04 0.64 5.14 -5.19 -0.03 0.61 16 24 H 0.20 3.15 7.80 -54.09 -0.42 2.73 16 25 H 0.06 1.01 6.69 -51.92 -0.35 0.67 16 26 H 0.11 2.40 6.50 -51.93 -0.34 2.07 16 27 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 28 H 0.05 0.77 7.33 -51.93 -0.38 0.39 16 29 H 0.10 1.61 7.30 -51.93 -0.38 1.23 16 30 H 0.04 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.10 0.94 7.91 -51.93 -0.41 0.52 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.56 8.13 -51.93 -0.42 0.14 16 34 H 0.09 1.13 6.67 -51.93 -0.35 0.78 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.14 2.95 6.01 -51.93 -0.31 2.63 16 38 H 0.06 0.98 8.05 -51.93 -0.42 0.56 16 LS Contribution 317.43 15.07 4.78 4.78 Total: -1.00 -33.12 317.43 -6.22 -39.34 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -4.99 Total: 4.14 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 0.28 Total: 13.28 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: -1.43 Total: -50.69 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: 0.17 Total: -26.02 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.12 -6.22 -39.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490961716.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.937 kcal (2) G-P(sol) polarization free energy of solvation -33.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds